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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0169900 |
| Transcript ID | LotjaGi2g1v0169900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT4G18750.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic; TrEMBL-Plants: tr|V7C2U8|V7C2U8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0169900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58511135..58513343) extracted from Lotus japonicus Gifu genome v1.2.
GTGGGGTGTTAAACCCAAATCCCGCCAAAAACCCTTACAGCACCAAACATTCGAACAACATAGACAACAAAGGGGAACAT GATCCCCAGAAAGTGACAAGTAAATGTCACTGCGTCCTTCACCCCGTTCCAACTTCAAAAGACCCCTTTACCTATGGAAC TTGATGATTCGAGACTCCACCAATAATGGGTTCTTCACAGAAACCTTAAAGATGCACTCTAGCATGCAACAATCTGGTGT TCATGGCAACAACTTCACCTACCCTTTACTCCTCAAGGCCTGTGCCAACCTCTCTTCCATTCCCCATGGGACAATGCTTC ATGGGCATGTCCTTAAACTTGGGTTCCAAGGTGACACCTTTGTTCAAACTGCTCTTGTTGACATGTACTCGAAATGCTCC AATATTACATCTGCACGCCAGGTGTTTGATGAAATGCCGCAGAGAAGTGTTGTGTCGTGGAATGCCATGGTTTCGGCTTA TTCTCGTGGGTCTTGGATGGACAAGGCATTGAGCCTCTTGAAAGAAATGTTGGTTCTTGGGTTTGAACCAAGTCCGTCGA CATTTGTTTCGATTTTCTCTGGCTATTCCAATTTGGATTCTTCTGGTTTCCTTTTGCAGGGGATTTCAGTGCATTGTTGC TTGGTCAAACTTGGGCTTGTGTGTTTTGAGGTCTCTCTGGCCAACTCACTGATGGGTATGTATGCCCGGTTTCGACAAAT GGATGAAGCAAGGAAGGTTTTCGACTTGATGGATGAAAAGTCAATAATCTCTTGGACAACTATTATGGGGGGTTATGTGA AGGTTGGGGACAATGTGGAAGCGTTTAAATTATTTAATCAAATGCAACATCAAAGTATCAGCATAGACTTCATTATGTTT CTAACTCTTATTTCTGGTTGTGTAGAAGTAGGACAGCCTTTGTTAGCTTCATCTGTTCACTCTCTTGTAATCAAATGCGG GGTCTGTGAGGATGATTCCATTGAACACTTGCTTATACATATGTATGCAAAATGTGATAACCTTACGTCTGCTAGAAGGA TTTTTGATCTGACCGCTGGAAAGAACATTTTATCATGGACATCAATGATAGCAGGATATGCCCAATCAGGTCATCCGGCA GAAGCACTTGATCTGTTTAGAAGGATGGTAAGGACAGATATTAGACCGGATGGAGCGACGCTTGCAACTGTTTTATCAGC TTGTGCTGATTTGGGATCACTAAGCAAGGGACAAGAGATTGAGGAGTACATTTATTTATATGGATTGGACTTGGACCAAC AAGTCCAAACGTCTCTCCTACACATGTATTCAAAATGTGGAAGCATCCAGAAAGCAAGAGAAGTATTTGATAGGGTGACA GATAAAGATTTAACCATCTGGACTTCCATGATAAATTGTTATGCTATCCATGGGATGGGGAATGAGGCTATCAACCTCTT TCACAAAATGACAGTTGAAGAAAGGATAATGCCAGATGCCATTGTTTATACTAGTATTTTGCTGGCGTGTAGCCATTCGG GATTGGTAGAAGATGGACTTAAGTTCTTCAAAAGTATGCATGAGGATTTTGGAATAGCTCCTACAGTGAAACATTATACT TGTTTGGCAGATCTTCTCGGTCGAGTTGGCCAGCTCGACTTAGCTGTAGATGCAATTCAGGGGATGCCACTGGATGTTCA AGCTCAAGCTTGGAGTTGTTTGCTCAGTGCTTGTAGGATCCATGGCAATGTTGAGCTGGGAGAGCTTGCAGCTGCTAAGT TATCAGACCTGAGTCCAGGAAGCTCTGGAAGTTATGTATTAATGGCTAATTTGTATACCTCTTTGGGCAAGTGGAAGGAG GCACATATTATGAGAAATTTGATAGATGGTAAAGAACTTGTGAAAGAATGTGGCCGGAGCCAGGTCGAGGTCAAGGCGTA GATCTCATACGTTTGTTGCAGGAAATCACTCACATGTTGGATTAGTCAATATCTATAAGACAATAGAAGATCTTCATTTT TCTCTGAATTGTATCTACAGCTAGGAAATCGGATTCTCTAAAATTTGAAAGTTAGAAAGCAAGACCTGCAATGCTAGCCC TAGAAGTGAATACTCACTTCATAGTTCGAAACTATTTCTACACGCACTTGATACTTCAATTCAGTCACAGTTGACTAATT AGCAATGGCATTTATAGAAATTCTAGCGTGCAAAATAAATAAAAATGAG
CDS sequence (LotjaGi2g1v0169900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACTGCGTCCTTCACCCCGTTCCAACTTCAAAAGACCCCTTTACCTATGGAACTTGATGATTCGAGACTCCACCAA TAATGGGTTCTTCACAGAAACCTTAAAGATGCACTCTAGCATGCAACAATCTGGTGTTCATGGCAACAACTTCACCTACC CTTTACTCCTCAAGGCCTGTGCCAACCTCTCTTCCATTCCCCATGGGACAATGCTTCATGGGCATGTCCTTAAACTTGGG TTCCAAGGTGACACCTTTGTTCAAACTGCTCTTGTTGACATGTACTCGAAATGCTCCAATATTACATCTGCACGCCAGGT GTTTGATGAAATGCCGCAGAGAAGTGTTGTGTCGTGGAATGCCATGGTTTCGGCTTATTCTCGTGGGTCTTGGATGGACA AGGCATTGAGCCTCTTGAAAGAAATGTTGGTTCTTGGGTTTGAACCAAGTCCGTCGACATTTGTTTCGATTTTCTCTGGC TATTCCAATTTGGATTCTTCTGGTTTCCTTTTGCAGGGGATTTCAGTGCATTGTTGCTTGGTCAAACTTGGGCTTGTGTG TTTTGAGGTCTCTCTGGCCAACTCACTGATGGGTATGTATGCCCGGTTTCGACAAATGGATGAAGCAAGGAAGGTTTTCG ACTTGATGGATGAAAAGTCAATAATCTCTTGGACAACTATTATGGGGGGTTATGTGAAGGTTGGGGACAATGTGGAAGCG TTTAAATTATTTAATCAAATGCAACATCAAAGTATCAGCATAGACTTCATTATGTTTCTAACTCTTATTTCTGGTTGTGT AGAAGTAGGACAGCCTTTGTTAGCTTCATCTGTTCACTCTCTTGTAATCAAATGCGGGGTCTGTGAGGATGATTCCATTG AACACTTGCTTATACATATGTATGCAAAATGTGATAACCTTACGTCTGCTAGAAGGATTTTTGATCTGACCGCTGGAAAG AACATTTTATCATGGACATCAATGATAGCAGGATATGCCCAATCAGGTCATCCGGCAGAAGCACTTGATCTGTTTAGAAG GATGGTAAGGACAGATATTAGACCGGATGGAGCGACGCTTGCAACTGTTTTATCAGCTTGTGCTGATTTGGGATCACTAA GCAAGGGACAAGAGATTGAGGAGTACATTTATTTATATGGATTGGACTTGGACCAACAAGTCCAAACGTCTCTCCTACAC ATGTATTCAAAATGTGGAAGCATCCAGAAAGCAAGAGAAGTATTTGATAGGGTGACAGATAAAGATTTAACCATCTGGAC TTCCATGATAAATTGTTATGCTATCCATGGGATGGGGAATGAGGCTATCAACCTCTTTCACAAAATGACAGTTGAAGAAA GGATAATGCCAGATGCCATTGTTTATACTAGTATTTTGCTGGCGTGTAGCCATTCGGGATTGGTAGAAGATGGACTTAAG TTCTTCAAAAGTATGCATGAGGATTTTGGAATAGCTCCTACAGTGAAACATTATACTTGTTTGGCAGATCTTCTCGGTCG AGTTGGCCAGCTCGACTTAGCTGTAGATGCAATTCAGGGGATGCCACTGGATGTTCAAGCTCAAGCTTGGAGTTGTTTGC TCAGTGCTTGTAGGATCCATGGCAATGTTGAGCTGGGAGAGCTTGCAGCTGCTAAGTTATCAGACCTGAGTCCAGGAAGC TCTGGAAGTTATGTATTAATGGCTAATTTGTATACCTCTTTGGGCAAGTGGAAGGAGGCACATATTATGAGAAATTTGAT AGATGGTAAAGAACTTGTGAAAGAATGTGGCCGGAGCCAGGTCGAGGTCAAGGCGTAG
Protein sequence (LotjaGi2g1v0169900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLRPSPRSNFKRPLYLWNLMIRDSTNNGFFTETLKMHSSMQQSGVHGNNFTYPLLLKACANLSSIPHGTMLHGHVLKLG FQGDTFVQTALVDMYSKCSNITSARQVFDEMPQRSVVSWNAMVSAYSRGSWMDKALSLLKEMLVLGFEPSPSTFVSIFSG YSNLDSSGFLLQGISVHCCLVKLGLVCFEVSLANSLMGMYARFRQMDEARKVFDLMDEKSIISWTTIMGGYVKVGDNVEA FKLFNQMQHQSISIDFIMFLTLISGCVEVGQPLLASSVHSLVIKCGVCEDDSIEHLLIHMYAKCDNLTSARRIFDLTAGK NILSWTSMIAGYAQSGHPAEALDLFRRMVRTDIRPDGATLATVLSACADLGSLSKGQEIEEYIYLYGLDLDQQVQTSLLH MYSKCGSIQKAREVFDRVTDKDLTIWTSMINCYAIHGMGNEAINLFHKMTVEERIMPDAIVYTSILLACSHSGLVEDGLK FFKSMHEDFGIAPTVKHYTCLADLLGRVGQLDLAVDAIQGMPLDVQAQAWSCLLSACRIHGNVELGELAAAKLSDLSPGS SGSYVLMANLYTSLGKWKEAHIMRNLIDGKELVKECGRSQVEVKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 14 | 48 | 35 | 7.487 | ||
| Pfam | 17 | 46 | 30 | 1.1 | ||
| Gene3D | 18 | 167 | 150 | 1.6E-30 | ||
| PANTHER | 18 | 177 | 160 | 1.2E-121 | – | |
| ProSiteProfiles | 49 | 83 | 35 | 5.941 | ||
| ProSiteProfiles | 84 | 114 | 31 | 8.166 | ||
| Pfam | 115 | 162 | 48 | 7.9E-9 | ||
| ProSiteProfiles | 115 | 149 | 35 | 11.992 | ||
| TIGRFAM | 117 | 150 | 34 | 6.5E-8 | ||
| Gene3D | 168 | 279 | 112 | 3.4E-17 | ||
| PANTHER | 173 | 270 | 98 | 1.2E-121 | – | |
| ProSiteProfiles | 189 | 219 | 31 | 8.21 | ||
| TIGRFAM | 194 | 221 | 28 | 5.3E-4 | ||
| Pfam | 220 | 266 | 47 | 7.3E-9 | ||
| ProSiteProfiles | 220 | 254 | 35 | 9.723 | ||
| TIGRFAM | 222 | 255 | 34 | 9.5E-6 | ||
| ProSiteProfiles | 255 | 289 | 35 | 6.665 | ||
| Gene3D | 280 | 384 | 105 | 3.8E-8 | ||
| PANTHER | 281 | 379 | 99 | 1.2E-121 | – | |
| ProSiteProfiles | 290 | 320 | 31 | 5.13 | ||
| Pfam | 320 | 368 | 49 | 1.3E-9 | ||
| ProSiteProfiles | 321 | 355 | 35 | 12.704 | ||
| TIGRFAM | 324 | 356 | 33 | 3.9E-8 | ||
| ProSiteProfiles | 356 | 390 | 35 | 5.875 | ||
| PANTHER | 376 | 584 | 209 | 1.2E-121 | – | |
| Gene3D | 385 | 604 | 220 | 6.8E-35 | ||
| ProSiteProfiles | 391 | 421 | 31 | 7.815 | ||
| Pfam | 396 | 421 | 26 | 0.034 | ||
| SUPERFAMILY | 402 | 580 | 179 | 3.8E-5 | ||
| ProSiteProfiles | 422 | 457 | 36 | 9.021 | ||
| Pfam | 425 | 450 | 26 | 3.1E-6 | ||
| TIGRFAM | 425 | 459 | 35 | 1.1E-5 | ||
| ProSiteProfiles | 458 | 493 | 36 | 8.769 | ||
| TIGRFAM | 460 | 494 | 35 | 1.1E-4 | ||
| Pfam | 461 | 487 | 27 | 0.0037 | ||
| ProSiteProfiles | 494 | 524 | 31 | 5.503 | ||
| ProSiteProfiles | 560 | 594 | 35 | 5.514 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0169900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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