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LotjaGi2g1v0173900.1

Overview

Field Value
Gene ID LotjaGi2g1v0173900
Transcript ID LotjaGi2g1v0173900.1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein; TAIR: AT5G40410.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410, mitochondrial; TrEMBL-Plants: tr|I1MJM4|I1MJM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0173900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:59132440..59139711) extracted from Lotus japonicus Gifu genome v1.2.

AACTCGATACTGTAGTCACTACTCCTTGGCTCAAAATGATTTATGATTCTCTAATTTTTTGTGCAATGTCAATAATACCC TTGATAGGAGAGGGGAGAGAGGACCAATATTACCCACCAGAATTTGTCTAGACTATAGTGACTATTTAATTTTTTTTTTT TTGAATTTCGACTATTTAATTTACTGGATGAATGAAGTCAAATTTCTGTTGCTCTTGCAAACTTGAAATGCAGACCACAT TATTTTCACCTTATTCAATTGCTACAATCCTGTCTCAACATATAAATTCCGGTGTAGTAAGAAATATCAAATTTCAAGTG TTTGAAATGATGATTTAGAGCGCCATAGGATGATTAGGTTGATTCATGCGAAATTTATGACTCTAACACTGTCCCCTCGT ATCCTGCATTGTCTCCCCACGTGTTGTACACTTCTCTCTGAAACCTCTGTTCGATTCCATTCCATTTCTACGTACCCTCG TGACCCTCTTGTGTCAACTCTACTCGTTGCTCTGAAATCTTCCTCTTCTCTCTACTGCTGCAGGGTCATTCATGCCCGAG TCATCAAATCTCTGGATTACCGAGATGGGTTCATTGGTGATCAGCTGGTATCGTGTTATCTCAACATGGGTGCCACCCCA GATGCACAGTTGCTGTTTGATGAAATGCCTAACAAGGATTTTGTCTCTTGGAATTCTTTAGTTTCTGGGTTTTCGAAAAG GGGAGACCTTGGCAATTGTATGAGTGTGTTTTCTGTGATGAAGTCTGACTTGGATTTGGAATTGAATGAACTTACTTTTA TATCTGTTATATCAGCTTGTGCTTTGGCGAAAGCACGGGAAGAAGGTCAGTATGTTCACTGTTGTGCAGTGAAATTGGGC ATGGAGTTGCAGGTGAAGGTCGTTAACACTCTTATTAATATGTATGGAAAGTTTGGGTTTGTTGACTCTGCTTTCAAGCT GTTTTGGGCGATGACAGAGCAGAATATGGTGTCATGGAATTCAATGGTGGCTGTTTGTACCCAAAATGGAAGGCCTAATG AAGCAATTAATTATTTTAGTATGATGAGGTTGAATGGACTTTTTCCTGATGAAGCCACAATGGTGAGCTTGCTTCAAGCC TGTGAAACATTGCATTTGAGAAGATTGGTTGAGGCAGTACATGGTGTAATCTTCACCTGTGGTCTTGATGAAAATATAAC AATTGTAACCACCCTTTTGAACTTGTATTCAAAGATAGGGAGATTGAATGCTTCTTGCAAGGTTTTTGCAGAGATAAGTA AGCCTGATAAAGTGGCATGCACCGCAATGCTTTCAGGCTATGCCATGCATGGGTGTGGTACAGAAGCTATACAGTTCTTT GAAAGGACTATAAGGGAAGGTATGGAGCCTGATCATGTTACTTTTACTCACTTGTTAAGTGCTTGTAGCCATTCAGGGCT TGTAGATGAAGGAAAGCATTACTTCCAAGTAATGTCTGATGTTTATGGAGTTCAACCCCGATTGGACCATTATTCGTGTA TGGTTGATCTTCTAGGTCGTTGTGGTCTGCTCAATGATGCTAAAGAGCTGATTAAGAACATGCCATTTGAGCCAAATTCC GGAGTCTGGGGGGCCCTTCTAGGTGCTTCTAGGGTTTATCATAACATCAGTATCGGGAAGGAAGCTGCAGAGAATTTGAT CGCATTAGACCCGTCAGACCCTCGAAACTATATCATGCTGTCCAACATATATTCTGCTTCAGGCCTGTGGAGTGATGCAG CAAAAGTGAGGGCTTTAATGAAGACTAAAGTTCTTGCTAGAAATCCCGGATGCAGTTTTATTGAGCATGGGAATAAAATC CACCGATTTGTGGTAGATGATTATTCTCACCCTGATTCAGACAAAATACACAAAAAGCTGGAAGAGGTTATGAGTAAAAT TCAAGAATTTGGCTTTGTGTCTGAAACTGAATCCATTCTCCATGATGTTGCTGAGGAGATTAAAACAAATATGGTCAACA AGCATAGTGAGAAGATAGCTCTTGCATATGGACTTTTGGTTAGTGCTGCTGATATGCCATTAGTTATAATAAAAAATCTC AGAATATGTCGTGATTGCCACAAAACTGCAAAATTTGTCTCCCTAATAGAGAAGCGTACCATCATTATCCGAGATGCAAA GCGATTTCACCACTTTTCAGATGGGTTATGTTCTTGTGGCGATTACTGGTAGTGATCTGTTCTCTAAAGAAGTTTGGCAC TGCACAAGCTACACGATGTCATTGATCATAAATCGTAAGATCCCATGCGATAATAAACTGGATTACTCTATGTTATATGA GCATAATTATATCTGCATATTTACATGCAATTCTAAATTCTTTGTTCAAACCCATCGTGCTCTATTTTTGTATATTATAC TCCTAAGTCCTAATACATATTTTTCTTGGATTATGAAGCTCAATCATGCTTCACTCCACTATGTAATGCTACACCGGAAA CATGATGCTTGTTTTGTCTTTCTATGTTGTACTTGAACAACTATGTTTTCTTATGACTGCATCACTCAAACGAAATAACA AAATGACGATAAGACCGTAATTAAGGTTAATTTAATCAACATTTCTAGGTTGATTGATTCATTTTGTACACTTAAAAAGT TGGCATTTCAATTATGTGCTTGTATACAAGTGTTTTTCTTTTTATTACTTCATCAGCTATTTTGACATTTATTACTTTAG TACATTTTAATATGACATATACTAGAAGTTACAAACAGACACATGAACTTTCAGGTAATTCTAATTCCGTGAAGCAGGAT AAAGATAAGAATGACTTTTATGGTCTTACAAATAAACAGATTACTACAGAAGGTGGACTTCTTGGAATTGCATGAGCTCT TATTCATATAGTTACTTCAGAAAGTGGGAAACTAAGAAATATGCTGGAAGGCAATTAGGTCCTTTTCAGTGATCTTTGTC TTGGTTTCTGGTGAAGGAGCACACATGGAGGGAAAAGGAAAAGGATTTTTGAACGGTATTTCCCTGTCATTATTACTTCT GAGATTTGTTACTAGAAATTTATTTTAGGTATCTATCACATATACACGCTTTTCCTTGGATTTCATTTTATATTCATCTT ATTATTATTCATCAGGTGCCTTGCTCCTTAGCTCAGTGTGGAATGTTTACATGCACAGTAATGCTAAATGCACCCTTTCT GTTGAGTTTTTTACAATGGATATATAATGTGGCAGAGTTTTGCTGGATGACTCTGGAAATAAGCAGGTTAAGGTTTTCAC TAAAGCCTTATAGCATTCTAGACTTCTGTAATACTCATTTCAAATGTGCTTTCTAGTTATTGCTTTCATCAGTGTTGTAT TTAAAGCTTCCAGTATTTGAGTAAATTATTGTGGCATTTAGTTAAGAGTACCAGATACCAGATTGCCATGTTTTACATTT TTATTTTTATTTTTCCAAGTGCTCTCTCTCTCCCATTCGACCTCTACCTCTCTTTTCTTTATCTTTTCTCACCTCTCTTT TCTTTACCGTTCGTTCTGAAAATTGTTGCTCTCTTCGCTGCTTGATCCTTGATTCTTCTCTGTTTTATCATCAATGAATC TCAGGTTAATTAAAGCTTACTCTCTCTCTCTTCAAGTCAGGTCCTTCATGGAGCTCATTGTTGTGCTTTAGATTAATTTG TTAGGGTTGTTTGTGTTTTGGCTAGATTTACATTTCGATTAGCATGCTCTTTTATGCATTTTGTTAGTTTCTTGCTCTGG TTCTCAAATCCAAATATTGTTGTCTAGTTATGTTCTTCAATTCATGAATGCATACCATTTTTGGTTTAAAATCAGTAAAC TTCTTGCATCTGTAAAGTGACTGACAACTAGGTCAAGTCTGACCAATAATCACAGGTTAATAAATTTGTTCATGACACAG TCCTTCATGCTTTCAAAGATTTCAGCTTCTAATTTCACAAGCCATTTTACAGATTAACACCTGCAATGGCTTCTATTGTG ATCATTTCTCTCCAACTAAGCCTTACAAACCAAAGATGTAAACAGAAACTTGGACTGGCTGGTATTGAGGCTTTCTTTCT TCTTCTTTTTGCTTCCTTTTTCCTTTAAACATACAAGCAATAGATAACATGTGACAATTCATTGCCTCTATTCATCTTTA ATGCTTTGCAGGTATACTGAGTTTGGAGGTCCAGTTCCTTGACCTGCTGAAGACTTGGCATTTTTAGTGGCAAGGTTTAT ACAGAAAGGGGGATCATTTGTCAATTATTACACGGTAATTTCATTATTTATTGATTTCGTTGTGCAATTGTGTAGGCTCA CCCTTTCTAGATATTAAACTGTGTCCCTTTGTTCTGTTAATCAGTCGTGAGTTCTTATCTTCGTGGGTCAGCCATGTAGC TCGTGAGTGTTGGCTCCAAAAGATTTCTTCCTGTTGGAGAACCTCTTGCAGCACGCATTCTGTTTTCCTGGTCTCCAGAA TAATGTTTGTTATCTGTGCTTGTTCATTGAGTCTCCAGAATAATATTTATTCTCTCTATTTCATACTCATCTGTGAAATG TACACCCAAAACGCAGCTATTTTTCAATCTCCTCATCTAAATTATTCTCTTTCATTCATTTCAAAGGGTAATCGCTCGAA TGATGTGTACCTTTGTCTTTCCAATATCATCACCGCCCTCATTTCAGGTATGTCTCTTGAATCAATTTATTAGTTAATTT TCTTAGTTACAATTTAACAGTTAATTATTATTTATGAACTCTTTTATGTACCAAAAAAAATTTATGAACTCTTTTAAAAT ATAAAATAAATATATTAACTCCGAAAATTTTCAGTTATAGCTCATATAGCCAAAACTAATAATAGCAATATTTTGTAAAA TAATTATTTCAAAATTATATTTTAATTATTTTAAAATCTACCTTCCCGTGCTAAAAAATTAGCAGACATTTAAATAAGAA ATCAAACCATTATTCCTTCCAACACAAAAAAAAACATTTACTCTTTTTAAGAAAATTAGATTAGGCCTTAAAATAGCTTT TATAATATAACGAACCAGACTTCTGTCGTAATTTATTTTTCTTTAAATTGGTCAAACATATTTGAACAGTTAAAAAAAAA AAGGTCAAACTTCTTCACAGAAAACCCTAACCTATGATTTCCGAAGAAGCAAAAAAGAAAACCCTAACCTATATATTTCC ACCTTTTTTTGGTGCTTATATATATTACCACCTATTTACAACCCCGTTTAGGGTTTTCATATTCTCAAGTGTCAACTATA GGCATAGCAGCAAGCGCTTCAAGTTTCAACGTAACTTACTACAGTGCAAACATATATAAACGTAAGTCCTCCCTCAAAAT TCCCCAACGAAGGGAAGTGGAGACCCTGACTTTCAAAGGTATAATTAGTTGATGAGTGAATTATTACTTTAAGAAGCTGA AATTCTTGGTGAACGGAAAGCAGTACGAACCTGTAAGATTAGATTCAATTATGTGATTTTTGAATTTGCATTCAAAATCT GCGATGGAAGACGATAGGATTAGCAACTTACCGGATGACCTTCTCTGCCACATACTCTCTTTTCTCCGAACAAAGCAATC CGTTGCAACAAGCATTCTTTCATGTAAGTGGAAATCACTGTGGCGTTCAGTCCCCACCCTGGATTTGAACTATGGCCCCA GCAATTATACCAAAGAGGGTTATGACCACTTTATTCAGACCGTTGTTGCTGTTATCCAAACACTAGATCTCCATCAACCC ATAAAAAAATTCCGCCTCAGATTTACCTCATATGATGATGAGTCTACTAATATCAACGCTTGGGTCAATAGTGTTGTTCA ACGCGGAGTTCAGCACATTGATCTTTCCATATGCTTTCTCCAGTACCTTGAACAACGTCCCTCCACCAACTTGTCTGCCA TCTTCACTTGCAGTACACTTGTGGTTCTCAAGTTGGAGTGGTTAGAGTTGACAGAGTTGAAACCTTTTTCCTCTATTAAT CTCCCCTTGCTTAAAGTTCTGCATCTAGATTTAGTGGCTTTCTCAGAACTCCAATGTCTCACCCAGCTTCTTTCTGGATG TCCTGTTCTTGAAGAATTTATAGCAAGGTGTCCAATTTTCTATAACGACACCACTGGCAGCAACAGGGAATTGAAAACCT TACCCAAGTTAGTTAAAGCAGATATTTCAACACGTTTTTCGCTCATGGAAGCGGTTAAAAATGTGGAGTTTTTGCGAATT TATGAGGTATTATTGTGGCTTGTCCATTGTTCTTGGTTATTCTTCAGGAAAATGTCATGTTTGATTTCTTGCTGTTGTAA CTCATGCAGATGCAGCGTTTACGCCGACATGATGATGGTGAAGGCGCAGGCCCCTACGGTTTTCCCAAATTTCACAATTT GACCCATATTGAACTTGAGTATAACTGCCGCATTAGTGATTGGTTAACGGTAGTAGAATTGCTCAAGCATTGCCCCAAAC TTCAAGTTCTAGTCATTAACCAGGTTTGCTTGGAGGCTTCTGATGGTTTCTATTTTTTTTGCACTTCACATGTTTTCATT TATCTATTCTATGCTTATTGTTAACAGTCATGTTTGCCTGATGACTTCGGAGAAGTAGTAGAAGACTGGGAATACCCTCC ATCTGTTCCTGAAAGCATTCAATTATGCCTTAAATGTACTTCAAAGGAAAAGAATCTTGTATTGAATTTTAAATTAATCG AACTTGTTATTTACTTATGGTTAGTTGTGAACTTGATATAGTGTTCAAGTGTGAGGCAATTGTACGTTCGCGTCTGATCT TATGTAAACCTCCATTGGTAGGTAATATACCAAAAAAAACTGCACAGGCCGACTTTGTTTCCCTAACATCTTTAGGATGA TTTGTTTTGTTTTATTTGTCACAACACTATACTTGTCCTGGCAATGGAAAAAAGACGATGGAAGGAGTTAGGGATGGAGA GGTTGGGTTCCTTTCTTTTATTTGTGGAAATGAAATATCTGAAATGTTAGTCAGAGTTGGAGCTGGAAGGATGAAGAATC TTTTTGCAACTGAAAACAAACATTTACCTTGACCAGACATGCATGAGGTTGACTTATAGGAAGTTGCTGGTTCAATTAGA AGGTCTCAGGCCAAATCAAGGAATTATTGTGATAGATAGGAGCTAATAATTTCCCTGAGTCATTGAACACGGCTTTAATT AGTACATGGAACTTGTGTCAAATCCGATTGGAATATGAAGCACAAATAAGTAAATAAAATTCTAAATTGAAC 

CDS sequence (LotjaGi2g1v0173900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTAGGTTGATTCATGCGAAATTTATGACTCTAACACTGTCCCCTCGTATCCTGCATTGTCTCCCCACGTGTTGTAC ACTTCTCTCTGAAACCTCTGTTCGATTCCATTCCATTTCTACGTACCCTCGTGACCCTCTTGTGTCAACTCTACTCGTTG CTCTGAAATCTTCCTCTTCTCTCTACTGCTGCAGGGTCATTCATGCCCGAGTCATCAAATCTCTGGATTACCGAGATGGG TTCATTGGTGATCAGCTGGTATCGTGTTATCTCAACATGGGTGCCACCCCAGATGCACAGTTGCTGTTTGATGAAATGCC TAACAAGGATTTTGTCTCTTGGAATTCTTTAGTTTCTGGGTTTTCGAAAAGGGGAGACCTTGGCAATTGTATGAGTGTGT TTTCTGTGATGAAGTCTGACTTGGATTTGGAATTGAATGAACTTACTTTTATATCTGTTATATCAGCTTGTGCTTTGGCG AAAGCACGGGAAGAAGGTCAGTATGTTCACTGTTGTGCAGTGAAATTGGGCATGGAGTTGCAGGTGAAGGTCGTTAACAC TCTTATTAATATGTATGGAAAGTTTGGGTTTGTTGACTCTGCTTTCAAGCTGTTTTGGGCGATGACAGAGCAGAATATGG TGTCATGGAATTCAATGGTGGCTGTTTGTACCCAAAATGGAAGGCCTAATGAAGCAATTAATTATTTTAGTATGATGAGG TTGAATGGACTTTTTCCTGATGAAGCCACAATGGTGAGCTTGCTTCAAGCCTGTGAAACATTGCATTTGAGAAGATTGGT TGAGGCAGTACATGGTGTAATCTTCACCTGTGGTCTTGATGAAAATATAACAATTGTAACCACCCTTTTGAACTTGTATT CAAAGATAGGGAGATTGAATGCTTCTTGCAAGGTTTTTGCAGAGATAAGTAAGCCTGATAAAGTGGCATGCACCGCAATG CTTTCAGGCTATGCCATGCATGGGTGTGGTACAGAAGCTATACAGTTCTTTGAAAGGACTATAAGGGAAGGTATGGAGCC TGATCATGTTACTTTTACTCACTTGTTAAGTGCTTGTAGCCATTCAGGGCTTGTAGATGAAGGAAAGCATTACTTCCAAG TAATGTCTGATGTTTATGGAGTTCAACCCCGATTGGACCATTATTCGTGTATGGTTGATCTTCTAGGTCGTTGTGGTCTG CTCAATGATGCTAAAGAGCTGATTAAGAACATGCCATTTGAGCCAAATTCCGGAGTCTGGGGGGCCCTTCTAGGTGCTTC TAGGGTTTATCATAACATCAGTATCGGGAAGGAAGCTGCAGAGAATTTGATCGCATTAGACCCGTCAGACCCTCGAAACT ATATCATGCTGTCCAACATATATTCTGCTTCAGGCCTGTGGAGTGATGCAGCAAAAGTGAGGGCTTTAATGAAGACTAAA GTTCTTGCTAGAAATCCCGGATGCAGTTTTATTGAGCATGGGAATAAAATCCACCGATTTGTGGTAGATGATTATTCTCA CCCTGATTCAGACAAAATACACAAAAAGCTGGAAGAGGTTATGAGTAAAATTCAAGAATTTGGCTTTGTGTCTGAAACTG AATCCATTCTCCATGATGTTGCTGAGGAGATTAAAACAAATATGGTCAACAAGCATAGTGAGAAGATAGCTCTTGCATAT GGACTTTTGGTTAGTGCTGCTGATATGCCATTAGTTATAATAAAAAATCTCAGAATATGTCGTGATTGCCACAAAACTGC AAAATTTGTCTCCCTAATAGAGAAGCGTACCATCATTATCCGAGATGCAAAGCGATTTCACCACTTTTCAGATGGGTTAT GTTCTTGTGGCGATTACTGGTAG 

Protein sequence (LotjaGi2g1v0173900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIRLIHAKFMTLTLSPRILHCLPTCCTLLSETSVRFHSISTYPRDPLVSTLLVALKSSSSLYCCRVIHARVIKSLDYRDG FIGDQLVSCYLNMGATPDAQLLFDEMPNKDFVSWNSLVSGFSKRGDLGNCMSVFSVMKSDLDLELNELTFISVISACALA KAREEGQYVHCCAVKLGMELQVKVVNTLINMYGKFGFVDSAFKLFWAMTEQNMVSWNSMVAVCTQNGRPNEAINYFSMMR LNGLFPDEATMVSLLQACETLHLRRLVEAVHGVIFTCGLDENITIVTTLLNLYSKIGRLNASCKVFAEISKPDKVACTAM LSGYAMHGCGTEAIQFFERTIREGMEPDHVTFTHLLSACSHSGLVDEGKHYFQVMSDVYGVQPRLDHYSCMVDLLGRCGL LNDAKELIKNMPFEPNSGVWGALLGASRVYHNISIGKEAAENLIALDPSDPRNYIMLSNIYSASGLWSDAAKVRALMKTK VLARNPGCSFIEHGNKIHRFVVDDYSHPDSDKIHKKLEEVMSKIQEFGFVSETESILHDVAEEIKTNMVNKHSEKIALAY GLLVSAADMPLVIIKNLRICRDCHKTAKFVSLIEKRTIIIRDAKRFHHFSDGLCSCGDYW 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 3 3 -
Phobius 1 21 21 -
SignalP_EUK 1 21 21 -
Phobius 4 14 11 -
Phobius 15 21 7 -
Phobius 22 620 599 -
PANTHER 45 171 127 7.8E-92
Gene3D 48 164 117 1.2E-12
ProSiteProfiles 79 109 31 6.04
ProSiteProfiles 110 140 31 9.12
TIGRFAM 112 144 33 7.3E-4
Pfam 112 139 28 3.3E-5
ProSiteProfiles 146 180 35 5.842
Gene3D 165 275 111 5.2E-19
PANTHER 167 263 97 7.8E-92
ProSiteProfiles 181 211 31 7.52
Pfam 186 211 26 3.7E-4
ProSiteProfiles 212 246 35 11.389
Pfam 212 258 47 3.8E-8
TIGRFAM 214 248 35 6.9E-7
PANTHER 270 478 209 7.8E-92
Gene3D 282 502 221 2.8E-32
ProSiteProfiles 282 312 31 6.423
Pfam 312 360 49 5.0E-8
ProSiteProfiles 313 347 35 10.216
TIGRFAM 315 348 34 5.3E-5
ProSiteProfiles 348 383 36 7.87
ProSiteProfiles 384 414 31 6.774
Pfam 387 411 25 0.031
ProSiteProfiles 450 480 31 6.27
Pfam 486 609 124 2.6E-37

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0173900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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