Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0174000 |
| Transcript ID | LotjaGi2g1v0174000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endosomal targeting BRO1-like domain protein; TAIR: AT1G73390.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q7SAN9|BRO1_NEUCR Vacuolar protein-sorting protein bro-1; TrEMBL-Plants: tr|A0A151T3S3|A0A151T3S3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0174000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:59156879..59163997) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGCTGCCTGGTGTCAACTCCAAAGGACTCTGGTGAAAATAGAAGGAAGCCGGGGAGTATTGGGGAAGTTTCAGTATA TGTTCCCGGTCTTAGAATTCCTAAAACTGTTGATTTTGCTCAGCCACTTGGTGATTATTTGTCCAAGAATATCGTGGAAC GCCTATCTGCACTTAGAACGCGTATAGTTGTAATGGCTAGCCAAGAAGGTCCTACAATTACGAGAACAAAAAGAAAAAGT ACTACCCATCATGGTTAGTGTTAGTAACAATAAAATTATTTTATGATACTTAAGTTACTTAATTTATGGATGCATTGGTG TCATGTTATTTCATCTGCAGGAGGTTCAATACTGGCTGATCTTCTGCAGGCTCTTGAAGATTACTTGCCAGTTCTTCTGG GATTAGTTAAAGATGGTAAAGCTATGTTAGCCCCTTAGTATGTGATGTGTGCTCTCTATATGACAAGTATTGATTATTAC TACCTAACTTTTTGTTGTAGGAATCCATTTACAGTACAAAATACAATTTTCTTGGGTTAATCAAGAGGATGATAAAGAGG TAACTCCCCTTATTCTTTTAGTAAATTCATGCATGTTTCTAGATTTGATTTGAAGTTACTTTCTATCTTGAAGAGTGCTG ACCAATTTGTTCCCATTACTTCCATGCTTTATGGTGTGGGGTGATTGGCACTTACAGGAAACAACCATGTCTACTGCTTG GTATGAGGTGTTATCAGTTTTGCACTTGATGTCAATGCTATTACTATTACAGGCTAATTTGTTACTGCTTCCGAGATCAT CCAGTGATGGATATCAGCTGAAAGTATCAGAAGGTAAGGAATACTACAAAAAAGATTAACTTCCTTCCGGGTTCTCTTTC TGTTTTATTGAGGTTCGTTTCGTATTCAAGTATAAAGTCCTAGGGTACATGTAAACAAATTTTTTCCCTATCCCTGAATC TCTAATTGCTTATTATATTAAACAGCTAAGCACATTGGAGTAGATTAGTCTAGTCCTCCAATTTTAGACACTCCTTCCAG TAACTCTTTGTTCTTCTACAGATAAATAGTGATACACTTGTGAAATATTTTTGGCGGTTTCAAGTAATCTTGTTTCTTCT CTCTGTCTCTCATCGTGTGTGTGTGTCGAGGGGGGGGGGGGAAGGGGTGAAGTCGATGAGTTTTTGTATGTATACTATAG AACATCAATTATGTGAACCCTTCACTTGATATTTATAATTTAGATTATCTTTCTTTTTATTAATTTACAAAAACTGGCTA GAAATAGTTTTTTAATTACTACTAATTGCTAATTTCTAATATTTCTACTTGATGTCTGACAAAAGGTCATTTTATCCTTT TCTTTGTTTGTTCTTTCTTTCTACTGTCATGTTTGGTTGACTCTTTCTATAATTAGGGCAAGATACATGCACTGCACGTG TAATGTTTACAAATTCATCTTGTTAATATTAGTATATAGTAATTTTTTCCGCATCTGCTGGTTCTATATTATAATGGCTA ATTAATTAGCAAAAATATTCTATATTGTCTTGCACACTGCAATAGTTTGTTTGTTTGTTTTTTAATTGTTGCCCCAATCC AAATGTATATCGTACCTTATATATTAAAGTTAAGCTTTTATTATCTACTAACAGAAAGCAGACGAGCTGCTATTGATATC TTTTTAAAGGCTGCTGGATATCTAGATTGTGCTGTCAAACATGTTCTTCCACAGTTACCTGCAGAACTCAGGTTTGTACA TATCTGACGTATTCAATTAGTTTTGACTGTTTGAGTTTTTCTGTAATCTTAATAGCCGTCTACATTCTTTTTATGTTTAT TAATTTGGTTCTAATTTCAGAAGAAATTTACCAGTAGACCTATCAGAAGGAGTTCTTCGAGCACTAAGTCTACAAGCATT AGGACAGGTATGAATGTTTCTTTTGTATGGACCAATTAAATGAAGTCATTTATCTTATTTATTAATAACAGCTAAAACAA ATGTTTGATTAACATGGCAAATTTGTTGTCTACTTATCTTCTCAAATAGTTAGGGTGAGTATTCAAACAGCTATTAGGAT CAAAGAGGTTCTTATTGCAAAAGTTTTAACCAATCAATCCAGAGACTGGCTTGCCATGAAACACTTCCACTATTGATCTG TGGGCCATTCGACTAAAAATCACCCTGAAAATCTGTTACAAGTCTTACAGTTTGATTGTCTAGATTAAAAGCAGAGCTGT TTTTAGCTTTATTGGTCATTTAGATCCTACATAGCTTTCTTCTTCAAGAAAAATGCAGAACTTGTCTAAAGTAGGTATGA ATGTGTCCTATTTTTACTCAGAGGGCTGCCTAGTAAGTGATCTTTTTTATTGCATACCAAATAACTGAATCTGAAACAAT ATATTTGACCTTCAAGTCTCTTACTAGCTGACTTTGTTCTCATAAAAAAACTAAAGAATGAATTGATATGAAAGGTAGAA GAAAACAGTGGATCCACTAGATTTCAACTCAAACTCTTATGTTAGTTCCTTGGTATTTACGATGTATTTATTCCTTGAGA GTGAAAGTCAAAGTTATAAAAGGGATTAAAAATTGGGAGCTTATGCGGTGCCAGCTCCTTTTTGTTCCCTCCGGTATAGT TTAGTTCCTATAGGTTTGTTTCAACTATTGTAGTTTTGTTAAGGTGTTTCAGCCTTTTGGGTCTAATGGTGAACTGCCTA ATTTAAGAATTTGTGTGATTTGAAACCGTTAGTTATTGTGTAACTGTACTGATATTGTATAGAGGATTTGAGATGGGGAA TGTTCAATATATAGATACCTTTGCTCTCGTTCATATCTATTTTGGATTTTTATTTGTTTATTTCTTCCCTTTCTTTTTTC AGGGTGTAGATATACAACTTGGAATGGCAATTGATAGTGCCAAAGCCACTCTTGCAGTTAAGCGTAGACTAGCATGTGAG ATGGTGAAATGTTGGCAACAGGTGTAATAACTTGTTCCTAATGGGATCTACACTTTACTGTTTTCTCACTGGGGAATTGT TCCTGTTTTTTGGTTATATCCTGCATTTCCCATGGGATATCTAACTTGTTTCTCACTTTCTCTTTGATTAGTACTGTTTT GATAACATTTCCCTCCCTAAGATATACATTTATTTCAACTCTATATCTCTGTTTGTGGTGTGTCCTATGTATGAATGAGT GCATGAGTAAGTTAACATGGTTGCATTTGTTCAACATACATTACTCTGAGTCACTGTTTGTTTTACAGGCTCAAGATAAC ATTACGAACCTTCCGTTAGTAAATGGTTGGGGTGAAAAACATCGTCATTTTGTGAAATGGAAATATGTTGAAGCAAAGGT ATGCCTTTTCACCAGTTATATGCATTTTGGTATCTAATTGTCATGTCCTACTGCATACTAATATGAGCAGAGATGGATTT TTTGGTTTATTGATTACCTTATACAAAGAAATGTGGATGAAAGTATCAAGTTGTTTGCATAATCAATTTTCCTTCGCATG TCCAAGATTAAATATTGATTTGTGTAGAAAAGTGAGAAGTTAAGGCGATTGAATCTGTGTTTCTTAAGAGTCCAATTTCA GGGTGAACTGGCTAACGAGATATTTGATTAATTGTTTATAATGTACATGCTTTGTGTTAGTTGCTGAAGTGTAGTAAATT ATTTCCCCAAGCTGTTGCTAATGTTGTGACAGAGAAGGATGATCAGATCTCTTACCAATGCTATTAATAAAATCCAAATC CCTTTTAATATTCTTGCAGAATAATATCATATCACATATAAGTTGCAACTTGTATGATATATTTTAGGTAATTTAGTAAT TGTTTTAAGACTTTAGAGTCCCTGGGAACTATTTCATTATGCTTATCAGGTCAATAGTATGCATGTATATTATGCACGAG TCTGCAGAGTCTGGAAGAAGTAGTATAATTTTTTCTGCTAGGGAATGATAATGTGTATGAGTGCTCGCGTGTGCGTATCA TGTGATAGAGCCTTTATGTGAATTTTTTCTTTTGAAAGGCAACCTTTATGTGAGATTAATGAGTAAATCGTGATCATTAG ATCAAAAGATGAATGGTCTTGTGATATTAAAATTACTTTTAATGACCATCCATGCATGGTTAGAATTTACTTAGATTTTA GGATTCAGCTTGGTTACTGAAATAATCGACTAAATACTTTAACGGTAGCTCGGGCGTGATTGTAAATGCTTAAGTAATTT GATGTTTTTCTTGCTATTTATACCCATAATTTTATTAGATGCCACGAACACCAAAGTACAGACATATATGCTTTCTCCTG CTTTCAGCACATTCGTATATAATTCAGGAATTTGTACAAGAGATGCTTTCAGAAGAAGCAAGTTATATGGATTTATGTGT TTGTTGTTATGACTTACCAGGCTGCAGCGTATTATTATCATGGCTTGATTCTTGATGAGGGAAATACTGAGAAATCTCAT GGGATGGCTGTAGCTGCTTTGCAAGCAGCAGATGAATATTTCAAAGAAAGCAAGAAGTTTTGTGAGGCATTCAACATGGC ACCTCCATTATCAAGGTTAGCCATTGTCTTCCCTTTTATGTATTGCTATGTTGTTATTTGCCTCAAGAAAACAAATTTTT ACTTTCTTTATTCAAAACTCTCTGAACCAACAGTATGGTATAAGTTATATGTTTTTCAAAATAATGTGATACCATCATTA GTTGTAATTACCTTCAGCAGTTGAAGTTGGTAGTGGCTAGTGACTACTCAGTATATATGTGTTAATTTCCATTAACCTTG TAGATGTGACAATTTCTGCTGATTGGCACAAGCAGGGAAATACTTAAAAACCTTGAATGCACATACCTATGTGATTGTGT ATGCAAAAAATACTGTAATACCATTTGTCATTTTAATGTTTTATGTCTTCTCATTATAATATAATACTTCAGATAACGGT GGGTTCAGTTTCTATTTAAGAAAGGCGATTTATGGAAAAAATTGCAGTCTAGCTAGTGAATTTTGAAGTCATTTTAATAG CTTCATATTTTATGCCAGTGTTGATTTTTTTTTTTAATAAGAGACTTGGAGTCCATATATAAAGCATACACTCTTTGGGC ATGTGATGCTCTTTTGCCTTTTGCAAATGATGCATTCTGCCAGAATTCCTTAGTTAATGATATAGGTTTTCTGGGTTAAA TATCTATACATTATTAACTATTCTATCTGTAAATCGAGCATTTTTCAAATTCATTCTTTGTTGCCAAGAACAATAAACTA TGTTCCACAGAAGTTTCTCTGCCCTTGATTTGATTGAAATTGTGAAACACCTTGTATTTGGCATCCCCGTCATGTTTAGT TTCTTTTAGTATCTTACCTTTGAAACTATTTTCCCTAATTTCACCTCTGTGAGAAAAATGATTTTTCCCTCACCATACTC AGTATAATTTGGGTTAAAGTTGGTACTTGGTAATGATTATCTAATCTCCCATTGGCTATGAAGGATCACTGTGAGAATGT TTGTGTCAATGTATGTGTGTGTTTAAGGCTTGCAATATTTTAGCAATATCGTATGGCATCATTATTTACTATATTAACTA ATCAACTGCTGGAAATTTTTTTTACATCATCAAAGAAATCATTCTTCCTTTCGGTCAAATGTAATGGCACTCCTCATAAA GTAAAATTGTTTTAGCATATACTGACATGAGCTGTGGTTGGATAATATGAAAATTGAAATTATGACCTATCATTTCTTAA TGCACTCCCATTTTCGTCCTTTTCCTCTGTCATGAACTAATTACCTTTAAAAGTTAAACTGTTAAGTGAAAACGCATGAA TTATTTATATTTGTAATACTCCCCATCACAAGATTCCTTGGGTTTGAAGCGTGAACAATGACTTACCTAATTTCTTGCTG AAATTCAACCTTTTGTTTTTATTGAAAGAATGGAGGTGACAAGGATGTGACTCTAAAACAATTGGATATAGCTTTTCTGA TACATGAACAGGTTATCTCAAAAGCTCAAGATGCTAAGTGAAGACAGATGATTTTTTATGTCAACTACCAATTATCCCAA AAACTTAAGCTATTGGGTGAAGACACATGATAGAACTCAGAAATTTAGCAGTAGTTTATTGATAGAACCCTAATTCCCAA TTGGGGATTAGGGGAAAGATACATGAGAGAGATGCCAAACACCCTCTCTAACCCTAGAAAGAGAACCACTTCTCTCTCTA AACCCAATTCCTAAGAGAATACAAAGATACCCCTAATGTTCACTAATCCCTTATTTATAGGCAACATGCCTTATTACTAC CTTCTAACTAACTACCTAATAGGTGAGTACCTATCAACACATGAATGATTTTATATTTTATTCTAACACGCCCCCTCACG CGAGAGCCCATTGGCCTTGAAGTGTGGACAATGCACATTCTCACCTACCATTTGCTGAAATTCAACTTTTTTTATTTGAA TAATGACGGCAACAAAGATCGAACTCTCCGCTTAGTCAACAACTAATTATCCAAAAAGCTTATACTATTGGATGAAGACA CATGAATGGTTTTATATTTTATTCTAACATACTTTATTAAGAGAGATTGAGTGATAAGTTGATTTTATTTCATTTTATGG TTCCTTGAGAAATTTCATTGGCTGTGGTTTTGATGTACTTATCATTTTTTTAGTGAAGAGTACTATTGCTGAGTTTAGTG CTGTATTATTATAACCCATCTAACTGGAAGTCTTGGTGCAGAAATCCACCACTGTGGGGGACCATGAAATATCTGTCTGA AAAAATCCCCAAGGATACTTCAAGCAAGGTGCGAATAAACCGTGATCTGTATTCGTATGAAAGGTAAGCTTTCCAGAGTA CATGAGGAAATTGTTGCATAACTATTTATGGTTAATAAACAGTCAGCAAGAGGACTATAAGAACATAACTTGTCATTTTT CATTACAGGATCATGGAAACAGCACCCACATTGCCTGATTTTTCCTTGGCCTTGAAGCCAGATGAGTATCAACTTCCTCC AGTGGATTCCTGTTGGAGAACGGAGAACATAAAAGGCGAAGAAACTCATCCTAATAACCATCTCAAGGGTGACAAATGA
CDS sequence (LotjaGi2g1v0174000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTGCCTGGTGTCAACTCCAAAGGACTCTGGTGAAAATAGAAGGAAGCCGGGGAGTATTGGGGAAGTTTCAGTATA TGTTCCCGGTCTTAGAATTCCTAAAACTGTTGATTTTGCTCAGCCACTTGGTGATTATTTGTCCAAGAATATCGTGGAAC GCCTATCTGCACTTAGAACGCGTATAGTTGTAATGGCTAGCCAAGAAGGTCCTACAATTACGAGAACAAAAAGAAAAAGT ACTACCCATCATGGAGGTTCAATACTGGCTGATCTTCTGCAGGCTCTTGAAGATTACTTGCCAGTTCTTCTGGGATTAGT TAAAGATGGAATCCATTTACAGTACAAAATACAATTTTCTTGGGTTAATCAAGAGGATGATAAAGAGGAAACAACCATGT CTACTGCTTGGTATGAGGTGTTATCAGTTTTGCACTTGATGTCAATGCTATTACTATTACAGGCTAATTTGTTACTGCTT CCGAGATCATCCAGTGATGGATATCAGCTGAAAGTATCAGAAGAAAGCAGACGAGCTGCTATTGATATCTTTTTAAAGGC TGCTGGATATCTAGATTGTGCTGTCAAACATGTTCTTCCACAGTTACCTGCAGAACTCAGAAGAAATTTACCAGTAGACC TATCAGAAGGAGTTCTTCGAGCACTAAGTCTACAAGCATTAGGACAGGGTGTAGATATACAACTTGGAATGGCAATTGAT AGTGCCAAAGCCACTCTTGCAGTTAAGCGTAGACTAGCATGTGAGATGGTGAAATGTTGGCAACAGGCTCAAGATAACAT TACGAACCTTCCGTTAGTAAATGGTTGGGGTGAAAAACATCGTCATTTTGTGAAATGGAAATATGTTGAAGCAAAGGCTG CAGCGTATTATTATCATGGCTTGATTCTTGATGAGGGAAATACTGAGAAATCTCATGGGATGGCTGTAGCTGCTTTGCAA GCAGCAGATGAATATTTCAAAGAAAGCAAGAAGTTTTGTGAGGCATTCAACATGGCACCTCCATTATCAAGAAATCCACC ACTGTGGGGGACCATGAAATATCTGTCTGAAAAAATCCCCAAGGATACTTCAAGCAAGGTGCGAATAAACCGTGATCTGT ATTCGTATGAAAGGATCATGGAAACAGCACCCACATTGCCTGATTTTTCCTTGGCCTTGAAGCCAGATGAGTATCAACTT CCTCCAGTGGATTCCTGTTGGAGAACGGAGAACATAAAAGGCGAAGAAACTCATCCTAATAACCATCTCAAGGGTGACAA ATGA
Protein sequence (LotjaGi2g1v0174000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCLVSTPKDSGENRRKPGSIGEVSVYVPGLRIPKTVDFAQPLGDYLSKNIVERLSALRTRIVVMASQEGPTITRTKRKS TTHHGGSILADLLQALEDYLPVLLGLVKDGIHLQYKIQFSWVNQEDDKEETTMSTAWYEVLSVLHLMSMLLLLQANLLLL PRSSSDGYQLKVSEESRRAAIDIFLKAAGYLDCAVKHVLPQLPAELRRNLPVDLSEGVLRALSLQALGQGVDIQLGMAID SAKATLAVKRRLACEMVKCWQQAQDNITNLPLVNGWGEKHRHFVKWKYVEAKAAAYYYHGLILDEGNTEKSHGMAVAALQ AADEYFKESKKFCEAFNMAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYERIMETAPTLPDFSLALKPDEYQL PPVDSCWRTENIKGEETHPNNHLKGDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 422 | 422 | 8.7E-268 | ||
| Phobius | 1 | 135 | 135 | - | – | |
| PANTHER | 1 | 422 | 422 | 8.7E-268 | – | |
| CDD | 23 | 400 | 378 | 1.20499E-89 | – | |
| ProSiteProfiles | 25 | 427 | 403 | 14.769 | ||
| SMART | 25 | 403 | 379 | 3.7E-42 | ||
| Pfam | 35 | 332 | 298 | 6.1E-16 | ||
| Gene3D | 71 | 414 | 344 | 1.6E-42 | ||
| Phobius | 136 | 160 | 25 | - | – | |
| Phobius | 161 | 427 | 267 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0174000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…