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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0185400 |
| Transcript ID | LotjaGi2g1v0185400.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA polymerase epsilon subunit; TAIR: AT5G22110.1 DNA polymerase epsilon subunit B2; Swiss-Prot: sp|Q500V9|DPB2_ARATH DNA polymerase epsilon subunit B; TrEMBL-Plants: tr|A0A0L9VHK9|A0A0L9VHK9_PHAAN DNA polymerase epsilon subunit; Found in the gene: LotjaGi2g1v0185400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61145957..61151714) extracted from Lotus japonicus Gifu genome v1.2.
GCTGTTTCCCTCAAATAGGGGTATTTTCCCGCCCTAATCCCAACCCTGTTGATAGTTGAGACTGAAACAAACACAGCAGC AGCACTAGAGAGAGAAAGTAAAGATGAACGCTTCAACGAGGAAGAAGGTTCAGAAGAAATGCAAGATCAGAGGCTACAAT CTCAAACTCGAAGCTCTCGACGAGATCCTCTCCTACGTTTCCCGCTTCGAAGGCGACCTCGAAGACGATGCCATCGATCT CCTCCTCGATCAGCTCGAACACGAATCTCGTAACCCCTCTCTCTACCACCTGAATTAACTTATTTCTTCCATTTCGATTC AATTTTTGTTAAACTGAAGCGCTGATCGAAATTTCGCAGTGAATTCCACCATAATCGATAAGGAACCGGTGCACCGCGTG GTGACTCTGCTGTTGAAAGCTGAGGCGGCTGCCGAGGACGACGAGAGCCCTGACGACTCTGCCGCTGCTGCTTCCGCCCT TCGTGTCGTCGATGCGTTCCTTGTTTCTAAGTTTAAATACGACGCTATTAGGAAGCAATTCTACGAGTAGGTTTTCTTGT TCCTCAATTTCTCTCTTGTTTGAAGAGTCCTGCAATTGATCTGTCGAAGCAATGTAAAATGAATTTGGATGTTGAAATTT TTTAGGGCTTATTAAAAAAATGGAATTTTTTAGGGAAAATTGCGCAAAAGGAACTTCTGATGATTATTTTCCGCGAAAAG TAAATAAATAGCTAATTTTTTTCTTCATTATTCAGAATATAATTTTCTCTGTAGGATAGCTCACGTGTTAGGAGCTGGGG GACACATGGGTTGGGTAGGGGATGTCCAGGGATCGATTCCTGACGGGTGTAATTTATCTTTCCGATGTACCAAAAAAAAA GAATATGATTTTCTCTCAGGAACTCAATGCTTTGTAACTATGTCTAGTTTTACTTCTAGCTTTGGTGGTTTTAGGAATTC AAAGTTTCCATGGAACCAAAAGTTGGGGAATTCTGTTTTATCTTAATGGAGTTGTAGTGTTATATATTCTACAACTGTGT ATATGGACGGTAAAGCAGGACAGGTTATAGTTTGATTCATTATGTTTTTGTATGAGTCTCCACTTTAGTTAAGCAAATTG TTGGAAATTTGTGTTGGTTGTTGACTTGTACTTGAACTTGTTTATCATATGGCCACTAATTTAGGCCCATGTTATGTGTT TTTATTTCCAGGCATCCAGGCAGCTTACCGATTCATGGGGACGCATCAGCAAAAGCAGCTCTGTACAGGGATAGGTTTCT GTTGTTATTCCAGAGGCTCTCTCGTGACCAGAATTTTTCAAAGCCTGCTTTCGACTCTGAATTTTCACATTTTGGAAGCT GTGAGGTACTGCTGGATATTGTGAAATGCTGAGAAATGGGCATTCAATGCATACATTCAATTTGATGCTTTTGTCTTGTG ATGGGGATTAACATTTAATTTTATACTATGCTTTGTTTGTCAGATATCTCCTATTCAGTCTCTGGTTGGGCGGACAGGTA GAAGATGGGTAATGGGAGTAATATCTCAGCTGGAGGATGGACACTTTTATTTGGAAGACCTCTCCGCTTCAGTTGAAATC AATTTATCTAATGCTATATCCTTTAGTGCTTGAAAAATAAAATATTTTATGTTATTGAAAGAGGTCCATAATCTTGTTAA AGGTTTTTAATACTTTTTCTTGGGGATAAAGAATAATAAATGAGTGATAAATATTATCTTTAAATGTCAATATAATTACC TCTTTTGGTATTCCATATCTGTCTGAAATGTACAAATTCTTTGTCTGGCTATGGTTGCTCGCAACATATTTGCTCAGGTA GCTGTGTTGGGTTGGGTACATCCAAATTATGGGTATAGTTCTGTTAGTTTGGTAATCTAAGTGATTGATGGACTTGGTAC ACATGCTTAAAATAAAATTTTCCCGTCTTCTTAATTTTTATTAATTTCTATCTAACTATCTATAGCTCACTTGTATGCTT GGAAGTACTTTCATCGGTTTCTTTGACTAGCCATACAAGATAACTACAGGATTCTTTTCAGAGAACACCATAGTTGTGGT AGAAGGAGAAATGCTTGTAGAGGGTATTTTTCAGGTTCTTAATTGCATGCCCTTCTCGATATCTACTTCATGTGCTATTC ATTTTGTAAAACCAATATATCAGTTGTTTGATTTGTATATGCCTTATTCATATTCAGGATAAAGTTTAATATAGTGGTCA CAATTTTTATGACTTCTTTTTTGATTTTGTATATGCTTCTATTCGAAAAGACGATTTAATCGAAATGAAATTTACTAAAG ATTTAGTTGCTGCTTCTATGACTTATTTGGTTTGCTTTACAAGTTACAAGATCTCTTGCTGATGCAACAGTGAACATTTT GCGTGCCCTTTAAAAAGAAACCTGGACTCAAATGCTGAAGCTGAATTAAACTATCAGTGGAAATACCTTTCCTAGATGCA AGATCTTGATTCTTGAAGTTAACTATTTTGTCTGTGATGTTATATGCTTTTCTTGTGCCGCTGCAGCCCTTTCCTATGGT GGATTGATGCTACTTGCACAAGAGTGAAGGTGTTTGCATGAGTCTAGTAGGGAGGTTTTAGGTGGTTCTGCATCTACTTG AGTTGAGAAGAAACAACTTGTGGAATTGTGGGCCAAGTTTTGTCCATAAAACACTCGGTGGTATATATATGCTAGCAAAT AGGAAAGTTTATCCCCAGAGAAAAATTAAAATAACGTTGAATATATTTTAGATAAGAAAGAAATGGTTTATGACTTATTA TGGACTTAGAACTCATTATATTTAGACAAACGGAATTTCAGATATATGTCAGGGTAAGTTTAAACAGGAAAAGTTTATAG TTCTTGAACTTGAACATTGAAATTAGTCAAATTACATCAAATGTATAATTAGATAATATTTTTATTCTTTCTTTCAATTT TTTTATTCCTTCTGTTGAGTTTTTATAATTTGTAAATTAAAGCATATGACATATCTTTTTTATTTTTCTTCTTGAACTGT TAGTATTGGGGATTTCATCAACCTTCAGATTAAGTTATGCAATGGGGAACAATTGACTTCACCTGTGGCCTGATTTTAAG TTTTTACCTAGCTGTTTTGATATTGCAAATTCTTTTTTTCTATGTATCAATCCTTACATCTCCCACTACTGGTGGGGTAA CAGCTAGTTTTGGCATGTTGGGGGATATCATTATTGCCGAACCAAATTCTATGTTATTTTTTTGCCAATTTTGTTGAAAG CACATGCTTTACAAAGAATAATTACTTGGCACACAGTGGCATTTCTTATTTATACTTGGCTATCATCCTGTTGATAACTT GAAGGATGCTTATCGCTAAGGACTAAGGAGGGAGAAAATTTAACTTCATTTCAAATGCTTTCTTTCTTTTTTAAACCTGT TACAGAGGCTTGGAAAATTGTTGCCAATTTGTGTTTGATAAAATGCATTGAAATTCTAGAACTTGTTGGAGTTGATTTTA TCATGACAGCATATGGTCCATTTTTCTGACTTTGGGCATTTTCACTTTGTTATAATTGGTTCATTTCTTATGCAGGTTTT AACATGTGGGTTTCCTCCGTTGGAGGATAGAGATAAGTCACTTAAAACACTTGCAGGGCATGACTTTTTTGGTGGTGGTA CTTTTACAAAAGAAGAAACGGTATCATTACTATTCCCCTCCTTGTATTTAGTAGACATGTGCATATTGTTATGAAACCTC CATTTTTTTTGTGTTGTACTCCAATAAAATTTATTTTTCCTATACCTATACAATAGATCAGACTGGTAGAGATGGAGAAA AGAGCAGTCAATGACATGTTTGTAATATTGTCTGATGTTTGGCTAGACAATGATGAGGTAATTTGAAATATCAATTTGTT TTATTTTTTCTTCCTTTCCTCTAGCACCTTGTTATAAAACTGTAGCTTGATATAATCTTGATGCTGTTTTTCCGTAGAGA AGGCTTTGGGAAAGCTAGGGACAGTTCTGGATGGTTTTGAGAGTGTGGATGTGGTTCCTTCCTTATTTGTTTTCATGGGA AACTTCTCTTCTCACCCATGTAACCTTTCGTTTCATTCTTATTCGACCCTCAGGTGATTTCCACTTATCATTGTATACTT TATTCATTAATAAAACAGTGATAACTAAAAGCCTGGAACTAAGAAAGCACTGCTTCAGACTGAATCAAATATGTGATATG TTGTTAGTTATGATTAGAGTATATATATATAGTTGTGAGGATAACAATTACCAGAAACCTCAATACGCAGGTTGCAGTTT GGCAAGCTAGGGCAAATGATTGCTGCCCATCCACGGCTGAAAGAGCACAGTCGATTTCTTTTTATTCCAGGTCCTGATGA TGCAGGTATTTGACTACATGGATAATTACTTACGTTACGTTTCCCATTATCTTATACATGCAGTGATATATCCCTTTAAG CAATTTTTCCAGGTCCGTCAACAGTTCTTCCTAGGTGTGCGCTTCCAAAATATATAACTGAGGAGCTCCAAGAGCATATT CCCAATGCCATATTTGCAAGCAACCCCTGCAGGTTAATCCTATGTTTAAATATGATTGCATGGAACATCATCAACTATAC ATTTGAGTTATTTCTAGTAGCTATGTTCTGGTTGTTTCTGATTGTTCATATAACATGGTAACTGTTTGGCGACAGGATCA AATTCTATACCCAAGAAATTGTATTTTTCCGCCAGGATCTTCTGTATAGAATGCGCCGTTCATGTTTAATGCCACCTTCA ACGGAAGAAACTGATGATCCTTTTCAACATGTAGTCTACCTCTCCCGTGTTTTCTGCTTTATCAGCTTTTAATGTTTGTT TTCAGAATAAAAAAAACTCATGGATTTTGGTTTTAAATTGCAGCTTGTTGCTACCATAACCCATCAGAGCCATCTCTGTC CACTCCCTCTAACTGTACAACCTATCCTCTGGAATTATGATCATTGCCTTTATCTTTATCCGACTCCTCACACGGTACTG CTCATATTTGAATTATTTGTTTTATTCTTTTTGTATCATTTATCCAAGCTGGAATCACATTCGACAATGTCTCGAATCTT CACTTTCTATTCTATTTGGTATAATCACATCTCAAGACCTTGAGATAATTTGGGCAAATTATGCATGATGTGGAGACAGT AATCTGACCTTGGACAATGACTGATACAACTCAGCCTGGAAATAATGTTGTAATGCTGATTTCCTTGTCATGATCTTCCA ATGCAGATAGTCTTAGGAGACAGAAGTCAGCAGAAGGCGTTCAAGTACACTGGAATTACTTGCTTTAATCCTGGTTCGTT CTCAATTGACAGCACATTTGTCGTGTACCGTCCTTGCTCTCAGGAAGTTGAATTGTCATCCTTGTGAACCCAAGATAATT TCTGCTGGGTTACCATCCTCCATACATCAGTATCTCAGACATGCTGACTTCATTATTCTTTTATCAGAAGATATACAAGG CAATGAATGGAGATGGAAATCGTTGCCTTTGCCCTTTGGAGGATTTAGATTACAGCTGTCACTGTATTTTATAACTGAAT TAGCTTGTCATGCTACAAAAATTGTTGTATAGTAGGAATCTTTTTAGTCTAGTTGAGGTAATTTTTTTTATCTGGATAAT AATTGTAAGTGTATACTACAGAAAATGTGTTATTTTGAATAGGACTAAGCTACAATTATAATTGAAATATCAACCAAG
CDS sequence (LotjaGi2g1v0185400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGCTTCAACGAGGAAGAAGGTTCAGAAGAAATGCAAGATCAGAGGCTACAATCTCAAACTCGAAGCTCTCGACGA GATCCTCTCCTACGTTTCCCGCTTCGAAGGCGACCTCGAAGACGATGCCATCGATCTCCTCCTCGATCAGCTCGAACACG AATCTCTGAATTCCACCATAATCGATAAGGAACCGGTGCACCGCGTGGTGACTCTGCTGTTGAAAGCTGAGGCGGCTGCC GAGGACGACGAGAGCCCTGACGACTCTGCCGCTGCTGCTTCCGCCCTTCGTGTCGTCGATGCGTTCCTTGTTTCTAAGTT TAAATACGACGCTATTAGGAAGCAATTCTACGAGCATCCAGGCAGCTTACCGATTCATGGGGACGCATCAGCAAAAGCAG CTCTGTACAGGGATAGGTTTCTGTTGTTATTCCAGAGGCTCTCTCGTGACCAGAATTTTTCAAAGCCTGCTTTCGACTCT GAATTTTCACATTTTGGAAGCTGTGAGATATCTCCTATTCAGTCTCTGGTTGGGCGGACAGGTAGAAGATGGGTAATGGG AGTAATATCTCAGCTGGAGGATGGACACTTTTATTTGGAAGACCTCTCCGCTTCAGTTGAAATCAATTTATCTAATGCTA AGATAACTACAGGATTCTTTTCAGAGAACACCATAGTTGTGGTAGAAGGAGAAATGCTTGTAGAGGGTATTTTTCAGGTT TTAACATGTGGGTTTCCTCCGTTGGAGGATAGAGATAAGTCACTTAAAACACTTGCAGGGCATGACTTTTTTGGTGGTGG TACTTTTACAAAAGAAGAAACGATCAGACTGGTAGAGATGGAGAAAAGAGCAGTCAATGACATGTTTGTAATATTGTCTG ATGTTTGGCTAGACAATGATGAGGCTTTGGGAAAGCTAGGGACAGTTCTGGATGGTTTTGAGAGTGTGGATGTGGTTCCT TCCTTATTTGTTTTCATGGGAAACTTCTCTTCTCACCCATGTAACCTTTCGTTTCATTCTTATTCGACCCTCAGGTTGCA GTTTGGCAAGCTAGGGCAAATGATTGCTGCCCATCCACGGCTGAAAGAGCACAGTCGATTTCTTTTTATTCCAGGTCCTG ATGATGCAGGTCCGTCAACAGTTCTTCCTAGGTGTGCGCTTCCAAAATATATAACTGAGGAGCTCCAAGAGCATATTCCC AATGCCATATTTGCAAGCAACCCCTGCAGGATCAAATTCTATACCCAAGAAATTGTATTTTTCCGCCAGGATCTTCTGTA TAGAATGCGCCGTTCATGTTTAATGCCACCTTCAACGGAAGAAACTGATGATCCTTTTCAACATCTTGTTGCTACCATAA CCCATCAGAGCCATCTCTGTCCACTCCCTCTAACTGTACAACCTATCCTCTGGAATTATGATCATTGCCTTTATCTTTAT CCGACTCCTCACACGATAGTCTTAGGAGACAGAAGTCAGCAGAAGGCGTTCAAGTACACTGGAATTACTTGCTTTAATCC TGGTTCGTTCTCAATTGACAGCACATTTGTCGTGTACCGTCCTTGCTCTCAGGAAGTTGAATTGTCATCCTTGTGA
Protein sequence (LotjaGi2g1v0185400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNASTRKKVQKKCKIRGYNLKLEALDEILSYVSRFEGDLEDDAIDLLLDQLEHESLNSTIIDKEPVHRVVTLLLKAEAAA EDDESPDDSAAAASALRVVDAFLVSKFKYDAIRKQFYEHPGSLPIHGDASAKAALYRDRFLLLFQRLSRDQNFSKPAFDS EFSHFGSCEISPIQSLVGRTGRRWVMGVISQLEDGHFYLEDLSASVEINLSNAKITTGFFSENTIVVVEGEMLVEGIFQV LTCGFPPLEDRDKSLKTLAGHDFFGGGTFTKEETIRLVEMEKRAVNDMFVILSDVWLDNDEALGKLGTVLDGFESVDVVP SLFVFMGNFSSHPCNLSFHSYSTLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYITEELQEHIP NAIFASNPCRIKFYTQEIVFFRQDLLYRMRRSCLMPPSTEETDDPFQHLVATITHQSHLCPLPLTVQPILWNYDHCLYLY PTPHTIVLGDRSQQKAFKYTGITCFNPGSFSIDSTFVVYRPCSQEVELSSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 531 | 531 | 3.1E-242 | ||
| PIRSF | 1 | 531 | 531 | 7.7E-197 | ||
| Pfam | 289 | 494 | 206 | 9.9E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA-dependent DNA replication | A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. | ||
| Cellular component | Epsilon DNA polymerase complex | A heterotetrameric DNA polymerase complex that catalyzes processive DNA synthesis in the absence of PCNA, but is further stimulated in the presence of PCNA. The complex contains a large catalytic subunit and three small subunits, and is best characterized in Saccharomyces, in which the subunits are named Pol2p, Dpb2p, Dpb3p, and Dpb4p. Some evidence suggests that DNA polymerase epsilon is the leading strand polymerase; it is also involved in nucleotide-excision repair and mismatch repair. |
Expression pattern of LotjaGi2g1v0185400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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