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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0186400 |
| Transcript ID | LotjaGi2g1v0186400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|I1N6X6|I1N6X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0186400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61421677..61423362) extracted from Lotus japonicus Gifu genome v1.2.
GTTGACAACCTGAATCAGCTGCAGGCTATGGTTGGAGAAATTGATTGGTTTGGTCCTGGCAGTAGAATTATCATTACCAC TCGAAACAAACACTTGCTAACAACTCATGGGATTGAAAGAACATATGAAGTAAATGTGTTAAATGAGGAAGAAGCTCTTG AGTTGTTGACCTTGAATGCTTTCAGAAATAACAGTTGATTCAAGTTACAAGGACCTTATAAATCGTGCAGTAACTTATGC TTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACCTGTGTAGTAAAACTGTAAAAGAATGGAAATCAGCTCTAG ATCAGTATGAAAGGATTCCGGACAAAGATATCCAAAAGGTACTTAAAGTAAGCTATGATGATTTGGGAGAGGAAGAAAAA AATGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGGCATCCATTGGCCGAGGTTGAAGATATACTCCATGCTCATCATGG TGGTTGCCTGAAACATCACATTGGAATATTGGTTGATAGATCTCTTGTAAAGATCGGTTTGTATGGTAAGGTAACAGTAC ATGAGTTGATAGAGGATATGGGTAAGGAAATTGTTCGACTAGAAAAAATAAAAGAGCCTGGTGAGCGTACTAGGTTATGG AGCCCTGAAGATATACTTCAAGTTTTAGAGGAGGAGACGGTGAGTAAGTTAGATATAAATGGTTTGGTTTTTCATCTTAA AACCTTGATTTATTGTTTTAGACCGTTATATGCTCTCGTTACAATTGTTTCTATATATGCACGTTTAAATCTTACATGTA TATATTGTGCTTTATTTGTGCATTGTCTTAAAAAGGGAACCAGAGACATTGAAATCATCTACCTAGATTTCTCCTTGACT GGCGAAGAAGAAATAGAATGGGATGGAAAGGGCTTCGAGAATATGAAAAAGCTCAGAACACTTATTATTAGAAATGCTCG TTTTTCTAAAGCTCCCGAATATCTCCCAAATAGTTTGAGAGTATTGGAATGGGAGAGATATCCTTCAGAGTATTTACCAT CTAATTTTAATCCGAAGCAACTTGCCATATGTAAGTTACCCAGATATTGCTTTGTTTCATCCAACTTGGCTGAGTTATTG AAGACAACACCAAGGCAAGTGTCATGTGTTCATTTATTCAATCTGGTATATTAATAAATAAATTCTCTTTTAAGATATTA ATTTGGTCTTTATGTTTTATTTCTTTGTTTCTACATTTTTTGTGTTGCAGAAGCCTGTGAATTTGGAAGTTTAGAAGAAC TTAGCAGAGATACTTATGTATTTGGTCTGTCAAATTTAGAAGAACTTTCTGTATTGGTCTCAGATCACTCGAACTTGATT GCTGAAGTAGTTCCTTGTCCGTGTTATAATTATCTTGAAGAATAATTCTATGGTGAGATGAAGTTATTTGGAGGTTCTTT TTCACCATTAATAAAGGCAAATGGAGGTTCACAGAATGAGATGAAAAATGAGGCTGCTGTGCTATGTGGTGGTATACCTC CAAAAATGATAACTGATTCAAATTCTGTAATATTAAGCTGGGTTTGTAACATTTGTTGTGATTGGACAAATCTGGTTTAT TGGAGTTACACTTGCAGATGATGGTATTAATCTTATCCTTATTTGTTATTGTAATTTGTTGGCTTCTCAGATTAGTTGCA TATGGT
CDS sequence (LotjaGi2g1v0186400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTCAGAAATAACAGTTGATTCAAGTTACAAGGACCTTATAAATCGTGCAGTAACTTATGCTTCTGGCCTTCCATT GGCTTTGGAAGTAATAGGTTCTAACCTGTGTAGTAAAACTGTAAAAGAATGGAAATCAGCTCTAGATCAGTATGAAAGGA TTCCGGACAAAGATATCCAAAAGGTACTTAAAGTAAGCTATGATGATTTGGGAGAGGAAGAAAAAAATGTTTTTCTTGAC ATTGCTTGTTGTTTCAAAGGGCATCCATTGGCCGAGGTTGAAGATATACTCCATGCTCATCATGGTGGTTGCCTGAAACA TCACATTGGAATATTGGTTGATAGATCTCTTGTAAAGATCGGTTTGTATGGTAAGGTAACAGTACATGAGTTGATAGAGG ATATGGGTAAGGAAATTGTTCGACTAGAAAAAATAAAAGAGCCTGGTGAGCGTACTAGGTTATGGAGCCCTGAAGATATA CTTCAAGTTTTAGAGGAGGAGACGGTGAGTAAGTTAGATATAAATGGTTTGGTTTTTCATCTTAAAACCTTGATTTATTG TTTTAGACCGTTATATGCTCTCGTTACAATTGTTTCTATATATGCACGTTTAAATCTTACATGTATATATTGTGCTTTAT TTGTGCATTGTCTTAAAAAGGGAACCAGAGACATTGAAATCATCTACCTAGATTTCTCCTTGACTGGCGAAGAAGAAATA GAATGGGATGGAAAGGGCTTCGAGAATATGAAAAAGCTCAGAACACTTATTATTAGAAATGCTCGTTTTTCTAAAGCTCC CGAATATCTCCCAAATAGTTTGAGAGTATTGGAATGGGAGAGATATCCTTCAGAGTATTTACCATCTAATTTTAATCCGA AGCAACTTGCCATATGTAAGTTACCCAGATATTGCTTTGTTTCATCCAACTTGGCTGAGTTATTGAAGACAACACCAAGA AGCCTGTGA
Protein sequence (LotjaGi2g1v0186400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSEITVDSSYKDLINRAVTYASGLPLALEVIGSNLCSKTVKEWKSALDQYERIPDKDIQKVLKVSYDDLGEEEKNVFLD IACCFKGHPLAEVEDILHAHHGGCLKHHIGILVDRSLVKIGLYGKVTVHELIEDMGKEIVRLEKIKEPGERTRLWSPEDI LQVLEEETVSKLDINGLVFHLKTLIYCFRPLYALVTIVSIYARLNLTCIYCALFVHCLKKGTRDIEIIYLDFSLTGEEEI EWDGKGFENMKKLRTLIIRNARFSKAPEYLPNSLRVLEWERYPSEYLPSNFNPKQLAICKLPRYCFVSSNLAELLKTTPR SL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 190 | 190 | - | – | |
| SUPERFAMILY | 7 | 81 | 75 | 1.81E-16 | ||
| PANTHER | 10 | 170 | 161 | 1.1E-94 | – | |
| PANTHER | 10 | 170 | 161 | 1.1E-94 | – | |
| SUPERFAMILY | 58 | 165 | 108 | 2.5E-24 | ||
| Phobius | 191 | 215 | 25 | - | – | |
| TMHMM | 192 | 214 | 23 | - | – | |
| Phobius | 216 | 322 | 107 | - | – | |
| PANTHER | 219 | 313 | 95 | 1.1E-94 | – | |
| PANTHER | 219 | 313 | 95 | 1.1E-94 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0186400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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