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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0186700 |
| Transcript ID | LotjaGi2g1v0186700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27170.1 transmembrane receptors / ATP binding protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7KK90|G7KK90_MEDTR Functional resistance protein, putative; Found in the gene: LotjaGi2g1v0186700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61476616..61480546) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGTCAACCTTCTAGTCCGATCAGTTTTCTACAATTGCAACTTTAGTTTCATTTAAGAGATCCATAACCATACATGGC TGTGCCACCATCATCTTCCTCCTCTCTATTCGCCTATGATGTATTCATCAGCTTCAGAGGCTGTGATACTCGTCATGGTT TTACCGGTAATTTCTACAAAGCTCTTTGTGACAAGGGAATCCGCACCTTCTTTGATGATAAGGAGCTGGAGAGAGGGGAA GAAATCACACCTGCACTTGTCAAAGCCATTCAAGAGTCCAGGATTGCTATCCCTGTATTCTCAGCAAGCTATGCTTCTTC TTCCTTTTGCTTGGATGAACTTGTCACCATCATTGACCGCATTAAGAACCAAGGTCGGTTGGTCTTGCCTGTCTTTTATG ATGTTGATCCTTCTAAGGTGAGACATCAAACTGGGAGTTACAAAGAAGATCTGGATAAGCATCAGGTGAAGTTTGAACAG AATATGGAAAAGTTCACGGATAACATGGAGAGGTTGAAGAAATGGAAGACAGCACTTAGCCAAGCAGCCAACTTGTCAGG CTATCATTTCAATCTTGGGTACCCAACTTTATTTACCTTCTTATATTTTGTTTATATATATATATATATATACACACACA CACATATTATAACAGTAGTAAATTTCCCCCATTAGTCCTATTCCATATTCTAGTACCTTACATGGTGGAGTTTGATGAAA TAAATATATACATAGTGATTATTTTCAAACTTATAATGGATCATAAAATTATGTCGGTTTCAAGGGAAACTATTAGGTTT TCTATTCAACTCATCTTATAAATCCATACACCCCAACCAATGGGAGTACTAACCAAAAAAATCTAATAGTAGAATAAGTT ATTTCATTGAATGGCACACACTTTGCATTGTAATAATATAATTATCAATACATGGATATTCTGCATTTAGTATCACTTCA CATAAACTTCTCTGTTTTGGCAGGGATGGATATGAATATGAGTTTATTGGAAAGATAGTTAAAGAAGTCTCCAATAAGAT CAATCGTGTTCCCTTGTTTGTTGCAAAATATCCTGTTGGATTAGATTCTAAAGTGCTAGAAGTAATATCACTTCTAGATG TTGCATCCAATGATGGGGTTTGCATGGTAGGGATTTACGGATTTGGAGGAGTTGGGAAAACAACACTTGCACGAGCAGTT TACAATTCCATTTTTGACAACTTTGAATGTTTATGTTTTCTTCATAATGTGAGAGAAAATTCAAGCAAATTGGAGCGTCT CCAAGAGAAGCTTCTTTCTAAGACAGTTGAACTGGCAATTGACATAGGAGATGTCAATGAAGGAATTCCAATAATAAAAC AAAGGTTACAACGAAAGAAAGTTCTTTGGTTCTTGATGATGTTGACCAATTGAAGCAGTTGCAGGCTATGGTTGGAGGAA TTGATTGGTTCGGTCCAGGCAGTAGAGTTATCATTACCACACGAGACAAAAATTTGCTAACAATCCATGAGATTGAAAGA ACATATGAAGTAAATGTATTAAATGAGAAAGAAGCTCTTGATTTGTTGACCTTGAATGCTTTCAAAAATAACAAAGTAGA TTCAAGTTACAAGGACGTTATAAATCGTGCAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCA ACTTGTTTGGAAAAAATATAGCAGCATGGAATAATACATTAAGTCGGTATGAAAGGATTCCGGATAAAGATATCCAACAG ATACTAAAAGTGAGCTTTGATGCTTTGGAGGAGGAAGAAAAGAATGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGGCG TCCATTTGTTGAGGTTGAAAATATACTCCATGCTCATCATGGTGAGTGTATGAAACATCACATTGGAATATTGGTTGAAA AGTCTCTTGTAAAGATCAGTTCGAATGATGAAGTAACATTACATGACTTGATTGAAGACATGGGTAAAGAAATTGTTCGA CTAGAATCAACAAAAGAGCCTGAGAAGCGTAGTAGGTTATGGAGCCATGAAGATATACTTCAAGTTTTAGAGGATGAAAT GGTAAATGGTTTGGTTTTTCATCTTTAAACATGATTTATTGTTTTAGGCCATTATATGCTCTAGTTAGTAGTTATAATTG TTTATTACCCTTAAATCCTTAATAATATGTGAAGTTTTCTGTATATGCACGTTTAAGTCTTACATGTACCGTGGTTTATT TGTGCATTGTGTTAAAAGGGAACCAGAGATATTGAAATCATCTGCCTGGATTTTTCCTTGACGAGTGAAGAAGAAATAGA ATGGAATGGAAAGGGCTTCGAGAATATGAAAAATCTCAGAACACTTATTATTAGAAATGCTCATTTTTCTAAAGCTCCAG AATATCTTCCAAATAGTTTGAGGGTATTGGAATGGGAAAGATATCCTTCAAAGTATTTACCATCTAACTTTCATGCGAAG AAACTTGCCATATGTAAGTTACCCAGATATTGCTTTGTTTCATCCAACTTGGCTGGGTTATTGAAGACAGCACCAAGGCA AGTGTAATGTGTTCATTTATCCAATCTTGTATCTTGATATATAAATTATAATAATTTGGTTTTTATGTTTTATATCTTTG TTTCTACATTTTCATTTGTTGCAGAAGCCCGTGAATTTGAAAGTTTAGAAGAACTTGGCAGAGGTACTTGATGTATTTGG TCTGTCAAATTTAGTAGAATTTTCTGTTATGGTCTCAGATCACTCAAACTTGGTTGTTGAAGTAGTTCCTTTTCCCTGTG TTATGATTCAACTTGAAGGATAATTCTATGGTGAGATGGAGTTATCTCAAGGTTCTTTTTCACCATAAAATGCAAATGGA GGTTCACGCAATGAGCTGCAAATTGATGCTATATACGGAGCTATGTGGTTGTATAGCTCCAGTTATGATAACTGATTCAA ACTCTGTAAGATTAAGCTGGGCTTGTAACATTTATAGTGATAGAAGGAAATCACTTTGTTGATATTCTCTCATTTGTTGT GAAATGGTTGGACAACTCTGGTTTATTGGAGTTACATTTGCAGATGATGGTATTAATCTTATCCTTATTGGTTGTTGTAA TTTGTTGGCTTCTCAGATTAGTTGCATATGGTTCTAATTGTCCCGTTTCCCTTTCTCTTTTTAATGAATTCCTTGTAGTT TAGTTGTTTTTGCTTTGCTATCCTGATATACATTGTTCATTGTATTAAATTTCCTATCATTCTGCCTACATGTTTTCTTT TTTATGATCAAAGATCACTCAAACTTAGCTCCTTTTCCATGTGTTATGATTTAACCTATGTTGAGATGATGCTATCTGGA GGTTCTTTTTAATCATAAAATTCACATGGAAGCTCTCACAATGAGATGCAAACTGAGGCTTGTGAGCTATGTTGTTGGTC TTATAGATCCAGTAATGATAGCTGATTCAATTTTTTAGTCTTAAGCAGGGCTTGTAACATTTTTGGTGATAAAGTGAAAC TATCTTGTTGCTACTTCTATCAGGGAAAAGATTGGACAGCCATTGTTTATTGGAGTTAAATTTTCATATGATGCCATTAT TCTTATCATTGATGTAGTTATGAATAAATAGTAAATACATCACAAGGAATCCAAGATGAGCTTAAACCATTAGATTGTAC ATCAATATCCAAGTTCTCTTATTGATGTACAAGGCACCTAAATGAGTTAGAGATACTAACATACATTGGCATTCTAACTG TCAAATTTAATTCATGGTGCTCAGGGAAGTTAACTATACCAGTTGTGATGCTATACTCTAGTTAGTTCTTTATTTTGTTT ACACCAACAATCTAATGCTGCACTATGCAAAAAAGTTGTACACCCTTGCTTAATACAAGTGCCAAATTGTCTTTCTAGTT TCAAAAAACAG
CDS sequence (LotjaGi2g1v0186700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGCCACCATCATCTTCCTCCTCTCTATTCGCCTATGATGTATTCATCAGCTTCAGAGGCTGTGATACTCGTCA TGGTTTTACCGGTAATTTCTACAAAGCTCTTTGTGACAAGGGAATCCGCACCTTCTTTGATGATAAGGAGCTGGAGAGAG GGGAAGAAATCACACCTGCACTTGTCAAAGCCATTCAAGAGTCCAGGATTGCTATCCCTGTATTCTCAGCAAGCTATGCT TCTTCTTCCTTTTGCTTGGATGAACTTGTCACCATCATTGACCGCATTAAGAACCAAGGTCGGTTGGTCTTGCCTGTCTT TTATGATGTTGATCCTTCTAAGGTGAGACATCAAACTGGGAGTTACAAAGAAGATCTGGATAAGCATCAGGTGAAGTTTG AACAGAATATGGAAAAGTTCACGGATAACATGGAGAGGTTGAAGAAATGGAAGACAGCACTTAGCCAAGCAGCCAACTTG TCAGGCTATCATTTCAATCTTGGGGATGGATATGAATATGAGTTTATTGGAAAGATAGTTAAAGAAGTCTCCAATAAGAT CAATCGTGTTCCCTTGTTTGTTGCAAAATATCCTGTTGGATTAGATTCTAAAGTGCTAGAAGTAATATCACTTCTAGATG TTGCATCCAATGATGGGGTTTGCATGGTAGGGATTTACGGATTTGGAGGAGTTGGGAAAACAACACTTGCACGAGCAGTT TACAATTCCATTTTTGACAACTTTGAATGTTTATGTTTTCTTCATAATGTGAGAGAAAATTCAAGCAAATTGGAGCGTCT CCAAGAGAAGCTTCTTTCTAAGACAGTTGAACTGGCAATTGACATAGGAGATGTCAATGAAGGAATTCCAATAATAAAAC AAAGGTTACAACGAAAGAAAGTTCTTTGGTTCTTGATGATGTTGACCAATTGA
Protein sequence (LotjaGi2g1v0186700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVPPSSSSSLFAYDVFISFRGCDTRHGFTGNFYKALCDKGIRTFFDDKELERGEEITPALVKAIQESRIAIPVFSASYA SSSFCLDELVTIIDRIKNQGRLVLPVFYDVDPSKVRHQTGSYKEDLDKHQVKFEQNMEKFTDNMERLKKWKTALSQAANL SGYHFNLGDGYEYEFIGKIVKEVSNKINRVPLFVAKYPVGLDSKVLEVISLLDVASNDGVCMVGIYGFGGVGKTTLARAV YNSIFDNFECLCFLHNVRENSSKLERLQEKLLSKTVELAIDIGDVNEGIPIIKQRLQRKKVLWFLMMLTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 4 | 163 | 160 | 8.24E-42 | ||
| Gene3D | 6 | 189 | 184 | 2.5E-66 | ||
| PANTHER | 11 | 302 | 292 | 1.3E-112 | – | |
| PANTHER | 11 | 302 | 292 | 1.3E-112 | – | |
| ProSiteProfiles | 12 | 160 | 149 | 28.052 | ||
| Pfam | 13 | 188 | 176 | 3.6E-40 | ||
| SMART | 13 | 160 | 148 | 3.9E-40 | ||
| SUPERFAMILY | 185 | 303 | 119 | 2.7E-21 | ||
| Gene3D | 190 | 307 | 118 | 4.4E-16 | – | |
| Pfam | 205 | 289 | 85 | 2.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi2g1v0186700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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