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LotjaGi2g1v0192900.1

Overview

Field Value
Gene ID LotjaGi2g1v0192900
Transcript ID LotjaGi2g1v0192900.1
Lotus japonicus genome version Gifu v1.2
Description Glutamine synthetase; TAIR: AT5G37600.1 hypothetical protein; Swiss-Prot: sp|Q43785|GLNA3_MEDSA Glutamine synthetase nodule isozyme; TrEMBL-Plants: tr|I3T8A0|I3T8A0_LOTJA Glutamine synthetase; Found in the gene: LotjaGi2g1v0192900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:62494125..62498732) extracted from Lotus japonicus Gifu genome v1.2.

GTAAACAGCCGCAAATCATGCTTAGTGGATTCCATTTATGAAACCAAAGTCATCATGTATCCTCCATTTGTTTTCCTAGA AACTTAAAATACAACCCTTTTTTATTCTAATTTTCAAAACCAAACTCACCTGAAAAAAGAAAGAAAATTGAAGTCTCCAA GCACATACAAGCACGTCTAAGACAATAATGAGTAAATACACAATGATATGATAACTTCACGCCACTGACTCCATTATAAA ACTCATAAGACCAGGCATTGTTTTCCACCTATCAGAAAGCTAGAACTTCCACTGTTGATTAGCTATCATTTGCCCTTCTC TCATTGTTCTGCTTCCTGCACAACCACTAGTTATGTCTCTGCTTTCAGATCTCATCAACCTCAACCTCTCAGAATCCACA GAAAAGATTATTGCTGAGTACATATGGTGAGTTCCCAAACCCAATCATCTAAATAGAAACTCATGGAAACAGGGGACTCT GTTTTTTCTGAAACAGGGGACTCTGTTTTGCTTTCTGTTTATGATTGTTTTTTACTAAAGACTTGCGCAAAAAATGTAAC CCCTTTCTGGAGGGGGTAAACTGTTCTTTCTGATTCTGGGTATCTTTTAACTGGGGTGATTCTTTTGGAACTTTTCTTCC TTTGACATGTTGCTCCATCTTCCTCCTTTTAGCACTATGGCTTTCTGGTGGATCAAATTAACACTTTTTTTTTATAGATG AGTCATAAAAAACCTGTTCTTGGGTTGATCAAAGGAAAATCATTTAATGCTTTTTATGTTATCATAAACAGGGTTGGTGG ATCTGGTCTGGATATCAGGAGCAAAGCCAGGGTAATTTTTTTTTTTCTTCATCACAAGTGATAATTACTAAAACTTTTCT TGTTCACTTTGTTGATTATTTATTTATTTTTGGGTTGGTTTGTCTTTGTGATAACAGACTCTACCTGGACCAGTTAGTGA CCCTGCAAAACTTCCCAAGTGGAACTATGATGGTTCTAGCACAAATCAAGCTCCTGGAGAAGATAGTGAAGTCATCCTAT AGTATGATTTAATTCCTTTGGTATTCTCTGATTCTTTTTTTATTATTTATTTTCACAGAGGACTTATAAGTGGAATTTTC TTATTGTCTGGTATTTATATTTGAAAAAAAGTCCACAAGCTATTTTCAGGGACCCATTTAGGAGAGGAAGCAACATTCTT GTAAGTTTTTTTCAATTTGAACACTTGGCTTATAAGTTATAATTAAACAAAAGCTCATGTTTCATAATCCATCAAAATGT TTAATTTCTTGTGAAAATCTATAGGTGATTTGTGATGTTTACACACCAGCTGGAGAGCCACTTCCATCAAACAATAGGTA CAATGCTGCCAAAATTTTCAGTCAGCCTGAGGTTGCTGCTGAGGTACCATGGTATGCATTTCCAAATTCTTGAAACCCTT ATTAAAAACCATATTTTTACATTATGCGTGTTCATGAAATTGTTATTAATTATTATAAAATAATTAAAATTACTCTTGAT ATTAACAGGTATGGTATTGAGCAAGAGTATACCTTGTTGCAGAAAGATATAAATTGGCCACTAGGTTGGCCAGTTGGTGG ATTTCCTGGACCACAGGTCTGAAATGTTACCTATATATTTTTTTCCTCTTCATGTTTTTGTTTTCTGTTTTTTCTTCTTC TTTTTTCCCTCTTTGTGTTTTGGATTTGTAGCAATTGTGCAATTCTTCAAATTGTTGTATGAACCTTGTTTATGGATTTT TATTGTTGCCATTAACATTGCATCTCCCAATTTTGATTGTCCTATTTTGCAATAATTGACACAGAATAATTCATGAGTAT GTCCTTCTCCCATATTTGGCATCACTTATGTTTGGGGTAAGAAAGTGGTTTTGCTGATGGCAAAAAGTGTAGGGTCATTT AATTCATACCTTGCAATTGCATAGTCAAAAGTCATAGAAGCATTATAATTATTTTTTTACCTGCTAAAATTTAATTCTTC CTTTCATTTTTCTTTGACAATTGAAAATTAATAGTATTATGTAACTGTCTAAACTGGAAGCAACATCTAATTTAATTAGA TTGATTATCCCTTCTGTTATAAATCAAAATTAGGTAAATGTTTTCTTGTGTTCAACTAAATGTTTGCTTGAACAGGGCCC ATACTACTGTGGTATTGGTGCTGATAAAGCCTATGGGCGTGACATTGTAGATGCACATTACAAAGCTTGTCTTTATGCTG GCATTAACATTAGTGGTATCAATGGAGAGGTTATGCCTGGCCAGGTATAAACAATTTATATTTTAGTGTTCTTATAATAA CCTTATTGACTTATATTGAAAATTTAATATTTTTTATTTCTTATTTTAGTGGGAATTCCAAGTTGGTCCTTCTGTTGGTA TCTCAGCTGGAGATGAGATATGGGCTGCAAGATACATTCTTGAGGTAATTTCAAGTTTCATTGATTATTTTGTATAAAAA AATAATTTTGGATCATGATAAGTAGTGAATGAAAATATAAATATTAATGAAATTTTTATATATTACAGAGAATTACAGAG GTTGCTGGAGCAGTTGTTTCATTTGATCCTAAGCCTATTCCTGTAAGAAATATCCTTGAATATTTTGCATTTGTAGAAAT TAATACATTTTCTTAGTGGAAGATTTGGAAGAGAGAAAATTTGACCTTCTTATTCTTTTGTTTCAACATTTTGACTTTAT TGGTTGCATTGTTCTTATTAGGGAGACTGGAATGGAGCTGGTGCTCACACAAACTACAGGTAATATATATAGCTTAATCA TGTAGTGTTGTTCTTTTTTGGCTTAATTCTTTAAAATCTTCTCATTTGCTGAGACTTTGCAATGGTGATTCCAGCACCAA GTCCATGAGAGAAGATGGAGGCTATGAGGTGATCAAGAAGGCCATTGAAAAGCTTGGATTGAAGCACAAGGAGCACATTG CAGCATATGGAACAGGCAATGAGAGACGTCTCACTGGGAAACATGAAACAGCTGACATCCACACCTTCTCTTGGGTAAGT GCATATTTGGAATTCTTTGAACCGTTGATTTTAAAGCTAAAATTAATTATTGGAAGAAGCTTTTATGCATGTTCGGATCG GCATCTTCATAATTGATTTTGGTAAATATTGATTTTAGTTAAAATTGAGTTGAAAATGAAGTAATTTATGTTTGAATACA TTTATAAAAAAAAAAAGTAGTTTTGTAGGTTAAGGTTACAAATTTTTGTTGTAAAATTAAAATCTCATAATTCTCAGAAG CAGTTCTCTCCAATTTGTATCATAATTAATTTTAAGACTGAAATTAACTCTCTAAAATGACTTTTAAACATCAGATTTAA TTTTACTCAACTGAGGAAAAATAAGTTGGTACAAACCTGCTATTAGGTGGGAAATCAAAAGGCTAACTAGAAATATCAAT GCTATAACACTACATCTTGTCCTTAATGATCATTTTTATCTTAAACAGTTTGTGTGAATTATTAGAATTGTTCCCCATGT CGGTAATAAAGTACACCAACAAGCATGACACAAAAAGTAATGATTTTCAACAACCAAAGAATATCTTTAAGTCACAGAAA GTAATGATTTTAAATACCCAAAGAGATACTTCAAGAATCTTGATGTTTCATATATATTTGCAATGTCTTGAACAAAATAT TCAATTATGTTCTATTATTTTGTTTGTATAGGGTGTGGCAAACCGTGGAGCCTCAGTTAGAGTTGGAAGAGAAACAGAGA AAGATGGGAAAGGTTACTTTGAGGACAGAAGGCCTGCCTCTAACATGGATCCCTATGTGGTCACTTCCATGATTGCAGAG ACTACTATCCTCTGGAAGCCATGAAAATCAAATCACAGCCATTGATTTGCTTCTAGATTTAGTATTATTGGCCATGTACG TGGTCTTTTAATCAAAGCATTTGCTCCATGGACCCTATGTTCGGTTGAGCAATGACTATATCATTAATAACCGCAGGGAC TATTGTTTCTTGATTTCACTCTTCTGATTTATCACTTGAGTTATGATCATTATGGACTATTTTATTGTCCAATTTTATTT CCATGTGCTATTCACTTTTTTTAAAGCAAAAATTGATTATTCAATCCAATGAATTATGAGAATAATATCTCTCGAGTAAG AAAATATATGAACTCCTTAAAAAAAATATGTATATAAACAAACTCTCACCAAACCTTTAAAGCTCCTACCAAAAATATAT AGAAGGACAGATCCCAATTCAATCATCCATGTGCTATCTCACTTAGCCAAAATTTGGACCACTGAAAAGTTTTACTCTGC TTTGTGACACAAGAAATGTTAACTATGTCCTAAAATTACTGATTAAGGTCTTATGAATATAAATATTTAGTATTGATAAA AGGTGTTTTCTTAGATGATTTTGGCAAAACAACTTATTTAAGAGAGCTTGTGGAAACAAGCTCTTATATAATCGTGAAGT ACTTATTTATAAGGTGAATTTGAAAAACTAACTGAAATAATTAATCTGGAAATAACTTCATAAACTAGTCTGAATAGTTT ATAAAATGAGCTCAAAACAAGCTTATCTGTAAGCTATAAGCTATTTAC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0192900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTCTGCTTTCAGATCTCATCAACCTCAACCTCTCAGAATCCACAGAAAAGATTATTGCTGAGTACATATGGGTTGG TGGATCTGGTCTGGATATCAGGAGCAAAGCCAGGACTCTACCTGGACCAGTTAGTGACCCTGCAAAACTTCCCAAGTGGA ACTATGATGGTTCTAGCACAAATCAAGCTCCTGGAGAAGATAGTGAAGTCATCCTATATCCACAAGCTATTTTCAGGGAC CCATTTAGGAGAGGAAGCAACATTCTTGTGATTTGTGATGTTTACACACCAGCTGGAGAGCCACTTCCATCAAACAATAG GTACAATGCTGCCAAAATTTTCAGTCAGCCTGAGGTTGCTGCTGAGGTACCATGGTATGGTATTGAGCAAGAGTATACCT TGTTGCAGAAAGATATAAATTGGCCACTAGGTTGGCCAGTTGGTGGATTTCCTGGACCACAGGGCCCATACTACTGTGGT ATTGGTGCTGATAAAGCCTATGGGCGTGACATTGTAGATGCACATTACAAAGCTTGTCTTTATGCTGGCATTAACATTAG TGGTATCAATGGAGAGGTTATGCCTGGCCAGTGGGAATTCCAAGTTGGTCCTTCTGTTGGTATCTCAGCTGGAGATGAGA TATGGGCTGCAAGATACATTCTTGAGAGAATTACAGAGGTTGCTGGAGCAGTTGTTTCATTTGATCCTAAGCCTATTCCT GGAGACTGGAATGGAGCTGGTGCTCACACAAACTACAGCACCAAGTCCATGAGAGAAGATGGAGGCTATGAGGTGATCAA GAAGGCCATTGAAAAGCTTGGATTGAAGCACAAGGAGCACATTGCAGCATATGGAACAGGCAATGAGAGACGTCTCACTG GGAAACATGAAACAGCTGACATCCACACCTTCTCTTGGGGTGTGGCAAACCGTGGAGCCTCAGTTAGAGTTGGAAGAGAA ACAGAGAAAGATGGGAAAGGTTACTTTGAGGACAGAAGGCCTGCCTCTAACATGGATCCCTATGTGGTCACTTCCATGAT TGCAGAGACTACTATCCTCTGGAAGCCATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0192900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLLSDLINLNLSESTEKIIAEYIWVGGSGLDIRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGEDSEVILYPQAIFRD PFRRGSNILVICDVYTPAGEPLPSNNRYNAAKIFSQPEVAAEVPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCG IGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEVAGAVVSFDPKPIP GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLKHKEHIAAYGTGNERRLTGKHETADIHTFSWGVANRGASVRVGRE TEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR20852
1 356 356 2.5E-239 –
Gene3D
G3DSA:3.10.20.70
1 103 103 2.9E-44
IPR036651
PANTHER
PTHR20852:SF91
1 356 356 2.5E-239 –
SUPERFAMILY
SSF54368
12 102 91 1.44E-17
IPR036651
Pfam
PF03951
22 97 76 1.6E-10
IPR008147
ProSitePatterns
PS00180
55 72 18 -
IPR027302
SMART
SM01230
103 351 249 2.1E-62
IPR008146
SUPERFAMILY
SSF55931
104 352 249 4.12E-69
IPR014746
Gene3D
G3DSA:3.30.590.40
104 356 253 1.0E-133 –
Pfam
PF00120
166 347 182 2.4E-15
IPR008146
ProSitePatterns
PS00181
237 253 17 -
IPR027303

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004356
Molecular function Glutamate-ammonia ligase activity Catalysis of the reaction: L-glutamate + ATP + NH(3) = L-glutamine + ADP + 2 H(+) + phosphate.
Subterm of
GO:0006542
Biological process Glutamine biosynthetic process The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid.
Subterm of
GO:0006807
Biological process Nitrogen compound metabolic process The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0192900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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