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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0193100 |
| Transcript ID | LotjaGi2g1v0193100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nudix hydrolase-like protein; TAIR: AT1G18300.1 nudix hydrolase homolog 4; Swiss-Prot: sp|Q9LE73|NUDT4_ARATH Nudix hydrolase 4; TrEMBL-Plants: tr|I3SE70|I3SE70_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0193100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62542325..62544260) extracted from Lotus japonicus Gifu genome v1.2.
GACAGGTAGATATATATCCTCTCTCCTCTCTTCATTTCTCCAACACCAATCATTCATTCATTCATGTCCCTTCTTCATTT CCTCTAATCTTCTTCATCTTCTTCTCTCTTCTCCTCTTCAATCATTCATCATCTCTGTAACAACAACAACAATTATTAAA AGCGTTATGGGTCTCTTGCTTTCTAGAAATTTGGCCTTTAAATTCTTCTACCCTTTGTTTTTCTCTAATAAGAAAGTTAC CAAGGATTTGTTCCCTAAGCAGTTGGAGAATGTTATTAGCTTGGTTTCTCCACGTACTGGCAGGCATTTGCAGCGTTATG ACAAAGGCTGTCGTCTTGTTGTAGGGTGCGTTTCTTTTTCTCCTTTGTGATTTTCCTGTTCTGGGGTTTCTTATTTCATG TTAATTGAAGTTGGAATTTTAATGTCTGGAATTGATGATGATGGAAAAGTTTTGAACTTTACAAGGTTTTCTCAATTGGG TTTTCTCTAAATGGGTTAAAAGGGTTTCCTTTTGATTCTATCATGGAATCATTGGAAGGATTTTTTATTTTTTATTTTTT ATTTTTTATTTTTTTTGTGGTTTGGATATTTTGTGGGTTTGATTATTAATCTAACTTGGTTATTGTGATTTTGGAAATGA ACAGATGCATTCCCTACAGATACAAGAGAAATGAAACACAGGACAAGGAAATAGAGGTTCTTGTGATTAGTGCTCAAAAG GGTCATGGAATGCAGTTCCCAAAGGTATTGTTTCCTCTCCACAACTTGTGACTGTTATGGCAATTGATGTTGAATTTTGG TACAATTTCACTTTTTTTTTGTCATGTTCCTGATTTTTTTTTCTTTTTTCAGGGTGGTTGGGAATCTGATGAATCCATGG AGCAGGCTGCTTTAAGGGAAACCATTGAGGAAGCTGGGGTTGTTGGCAGTGTTGAAGTGAGTATCTAGAACCACTTTTTT AAGATTTAATTCCTTTCCAAAATTGATTAGTCCTTTGAATGAATTCTTACCTTGTGTACTTTGGTTGCTTTCTCTTGCAG AGTAAATTGGGTAAATGGTATTACAAAAGCAAACGCCAACCCACAGTACATGAGGGATACATGTTCCCTTTGCTTGTTAG CAAGGAGTTGGATAACTGGCCTGAGATGAACACAAGAAGAAGAAAATGGGTAAGTTAACTACATAGCCTCTATTCAGTGT ATTCACCAGTCAATTCAACTTCCCAATTGCAAATTTCTTAATTAACATATTTGTTTGGTGTCCTAAAGTTTCATTGATTT GCATCATGCAGATTACTGTGGCTGAAGCAAAAGAAATATGCCCATATGCTTGGATGAAAGAAGCTTTAGATGAGTTGGTT AATAGACAAAGTACTAAAGTTCAGCCAAAAAAGATGGAGTTTTAATTAAGTAGAGGTTGTTAATTGTAGGGTGTTCCTTT GCTTTTGGAATCTACAAAGTGGTAGTACAGAAGCATTCACAAGATACTAGGACAGAGAAATTGAGATCAAAGTGGTGAAC TTGGAAACTACTGCGGCTCATGGTTTTGGTGCTTAGTGCATGTTTCGATACCCGGTAGAAAACCATGACGAGCCAAAATT GTGGCATAGAAGCAACTTCCCACCATGATTTTCATTAATCCATCTTAAGATTGCGAATTTGTAAAATGTAGTTGAGATGT AGCGATAGAGTTCAACTGGAGATGTACAAAGTCAAATCAATTCAATTCATTCGTTTATTCATTTGATTCTTTAACAGTCT ATTATGGAAGGTTTTGCCATTTAAGATCATTTATACATGGTTGCTCTAAATTCATTCTACTAATATATTACAGAAAAGGT ATACACCTGTTTCTGAGCATGTTATGTTAGATGTTGATGTAAAGAATTTTAACAGTGATGTGTACATATTAAATTCTTTA AGAGTTTGATAACAAT
CDS sequence (LotjaGi2g1v0193100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCTCTTGCTTTCTAGAAATTTGGCCTTTAAATTCTTCTACCCTTTGTTTTTCTCTAATAAGAAAGTTACCAAGGA TTTGTTCCCTAAGCAGTTGGAGAATGTTATTAGCTTGGTTTCTCCACGTACTGGCAGGCATTTGCAGCGTTATGACAAAG GCTGTCGTCTTGTTGTAGGATGCATTCCCTACAGATACAAGAGAAATGAAACACAGGACAAGGAAATAGAGGTTCTTGTG ATTAGTGCTCAAAAGGGTCATGGAATGCAGTTCCCAAAGGGTGGTTGGGAATCTGATGAATCCATGGAGCAGGCTGCTTT AAGGGAAACCATTGAGGAAGCTGGGGTTGTTGGCAGTGTTGAAAGTAAATTGGGTAAATGGTATTACAAAAGCAAACGCC AACCCACAGTACATGAGGGATACATGTTCCCTTTGCTTGTTAGCAAGGAGTTGGATAACTGGCCTGAGATGAACACAAGA AGAAGAAAATGGATTACTGTGGCTGAAGCAAAAGAAATATGCCCATATGCTTGGATGAAAGAAGCTTTAGATGAGTTGGT TAATAGACAAAGTACTAAAGTTCAGCCAAAAAAGATGGAGTTTTAA
Protein sequence (LotjaGi2g1v0193100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLLLSRNLAFKFFYPLFFSNKKVTKDLFPKQLENVISLVSPRTGRHLQRYDKGCRLVVGCIPYRYKRNETQDKEIEVLV ISAQKGHGMQFPKGGWESDESMEQAALRETIEEAGVVGSVESKLGKWYYKSKRQPTVHEGYMFPLLVSKELDNWPEMNTR RRKWITVAEAKEICPYAWMKEALDELVNRQSTKVQPKKMEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 195 | 176 | 2.0E-99 | – | |
| PANTHER | 20 | 195 | 176 | 2.0E-99 | – | |
| SUPERFAMILY | 45 | 189 | 145 | 1.49E-21 | ||
| Gene3D | 49 | 189 | 141 | 8.1E-31 | – | |
| ProSiteProfiles | 54 | 187 | 134 | 14.874 | ||
| CDD | 57 | 180 | 124 | 9.44429E-44 | – | |
| Pfam | 73 | 184 | 112 | 2.5E-12 | ||
| ProSitePatterns | 94 | 115 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0193100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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