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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0194100 |
| Transcript ID | LotjaGi2g1v0194100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12700.1 RNA processing FACTOR; Swiss-Prot: sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial; TrEMBL-Plants: tr|A0A072TFX1|A0A072TFX1_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi2g1v0194100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62713612..62718835) extracted from Lotus japonicus Gifu genome v1.2.
AGTGTATAAAAAAAATGAGGAAAAATTGTTAGTGTCCTGAATGGTAAAGGAGATTGGTGTTGTGTGTGTTTTGTCACTGT TTAAGCCTACAACGAAGCTCAGAGAACACTACAATGTCGTCTTTGTTTCGGTTAAGGTTTTTCTGGAACCCCTCTTGTCT TGTTCGCTCACACTCTCACTCTCCGCACCCTTTCATTCCCAATCACAACGCTGACGACGCCGTTTCCTCTTTCCTTCACA TGCTCCATTTGCACCCTGCACCTTCCATCATCGAGTTTAACAAGATCTTAGGTTCCCTTGTGAAGATGAAGCATTACCCC ATTGCTCTTTCCCTTTCTCAACAGTTGCAGTTCAAAGGAATCACACCCACCATTGTTACTTTGAGCATCTTGATTAATTG TTTCTGCCATCTGGGTCAGATGAGCTTCGCTTTCTCTGTATTGGGTAATATTCTCAAAAGGGGTTATCACCCAAACACCA TAACGTTGAATACACTCATCAAGGGTCTGTGTCTTAATGGTGATGTTAGGAGAGCACTGCACTTTCATGATGTTGTGGTA GCAAAGGGATTTCAGCTGAACCAGGTTACTTATGGGATTTTGATTAAAGGGTTATGCAAAGTGGGAGAAACAAGAGCTGC TTTGCAGTTGCTGAGACGGATTGAATCGCTGTCGGTTAAGCCTGATGTGGTAATGTATAGTACAATCATTGATAGCCTAT GCAAAGATAAACTTGTCAATGATGCATGTGATTTATATCATGAAATGATTGTTAAGGGAATTTCTCCCAATGTTGTCACT TGTACTAGTTTAATATATGGATTTTGCATTGTGGGTCAATTGAAAGACGCAGTTCGTTTGTTCAATGAAATGGAATTGAA TAACATTAAGCCAGATGTTTATAGTTTTAATGTATTGGTTGATGGATTGTGCAAGGAAGGAAAGGTGAGACATGCTAAAA GTGTGTTAGCTGTGATGATAAAAGAAGGTGTGGAACCGGATTCTGCTACGTATAATACCCTAATGGATGGGTATTGCCTA ATTAGTGAAATGACCAAGGCCCAAAATGTATTTAACTCTATGGCTCGAAGGGGAGTGACTCCTAATGTTCGAAGCTACAA TATCATGATTAATGGGTTCTGTAAGGTTAAAATGGTGGAGGAAGCCATGAACCTCTTCAAAGAAATGCATTGCAGAAAGC TTATTCCTGATATGGTAACATATAGTTGTCTTGTTGATGGTTTGTGCAAAGCAGGGAGAATCTCTCATGTTTGGGAGCTT GTTGATGAGATGCATGATAGAGGTCACTCGGCTAATGTAATCACCTACACTTCCTTATTGGATGGTTTATGCAAAAACCA TCATTTTGATAAGGCAATTGCATTATTCATGAAAATTAAAGATCGCGGAATTCAGCCAGATATACACACCTACACAGTGA TAATTGATGGACTATGCAAAGTTGGAAGGCTTAAGAATGCACAAGAGATTTTTCAGGTTCTTCTTAGTGAAGGCTACAAT GTAGATGTCAAGACATACACTGTTATGATCAATGGGTATTGTAAAAATGGTTTATTTGATGAAGCTCAGGCCTTGCTGTC AAAAATGGATGACAATGGTTGCATTCCTGATGCTGTGACTTTCGAAACAATAATTTGTGCTCTCTTTGAAAAAAATGAGA ATGATAAGGCAGAAAGACTTCTTCATGAAATGATTGCTAGAAATCTATTATAAGGATGAAACTAAATCTTGTGTAGTTTT AAGTCATCCAACAAGAAATGAAGAATATAGAAAGTTGAATACGAAGTTTATATTTGACACAGTGCGACCTTACTTCAGTT TGGTTTTCATGTGAGCAAGTGCGACCTTCTCACCATGTACACTAACTCCTGCTATATAAACCATTGTTTATGTTGATGAC ATTGTCATTACAAGGAGCTTCTCTTAACTTATCAACCACTTTATTTCACAACTTAACTGTACTTTTTTGGTATATTTGAT TCTGCCGACAAAGTGTTTGAAGTGTGGTCTGAGTTATGGATAGATAGATTGTTCCAGTAAATTGTGATTCATGGCTCCAC TGTGAAGTAGATATTCTTGCTTGCATTTCATTCATGTGATCTATTTGACTATACAAAAGCAAGTGCTGAGCCTTGCTTTC ATTTATTTGGGCATAATAGATCTTAAACTTGTCAGTTTTGATATTTGCAGGGTAAGATGTTCTTGACTCCTTGTAATCAA AATTTCGCTCAACCAAACATTTTATTTAATTCTGTATAGCTATAGTGAAAATAGCCTGTGGTTGTGAATGACAGTTTTTT CAATTATTCCTCTCACTTTATGAGTTACTTCTTTGTTTCAACCTTTTTACTTTGAGTTTATAGTGGTTTTGGAATTTTCG ATGTCTTGGTTCTTTTTCCATACTTGTACTGTGTTACTAATCTACCTCTTATGTTGAGCCTTTGTGCCGTCGAAGCTCAT TCATCATTGAGAGAGGAAACTGTCGCTGTTGGCTTCGTCATCCTCCTACAAAGGAAGTGCTCCGTCGAAGCTCATGTGTT GTCTGTGGTTTTCCATTGAAACTCGTCACTGTCAAAGGTTATTTTAGGACTAAGGATTCTTTCGAGTAAGTGAAAGAGCT TCTGGATTGTGTCCAGCTTTTAATTTGGTATGGTTCGATTGGTTTGCTTTCATGTTCCGATAAGCCTTATTGTTGGAGTG GTTTAATTTCTATTAACCTGTTCCCTCGTGTTGTCCAGATATCATTTTATAGGAACCAAACAAGTTTCAAGTATCATTTT GTTATTTTAAGGAACATCTACGGGAAATCAGATGATAAATTCTTGCTGACTTGTGTTTGATATATTATAAGGTTTTGTGC TTGCAGTTTTAAACATGAATTCCTCTTCCACATGTGTTATGGTATATAAATTTTCACTTCACTCCCCTCTGCCCTATGGG ACATGCTTATTTTGCGTTTTGGAAAATATTTAGAGATTCAAGAGATAGGTGTCGAGTGTCTATGTGCTGTGTATTACTTT AGTTGATAATCTTTCTTTTTTGTGTTTGATGTGTGAGACTAGTTTAATATCTGCTCCATTTTCAATTAGAAGTATGGAAC TGTAGATGTTCATAACTTGTTGAAAACATCCCTTTGGAAGTTATGGCAAATTAAACTAAACAGAGTTTGTTTCTTTAGCT TTTTTTCCAAATTCACCAGATCCTTTCATGAACTTTGCTAAAGCAGGGATTAAGGCAATGCTAGTTGAGAAATATATTAT ACCCTCCAAGGCTCCAATATTATGGCATTGATTGGTTGACCATTTTTTTCTTTTTGTGTGCTAAACAGGTTTTTATTAAT GATGCTGTTCTAGCTCCAATAAACCTTTTTGTATTTTTTCTCCTCCTTGTTTTGGAACTTTCCACACTTGTTACTGCTAA AAAGTTCTCTCATTATGAATAGGTACATTGATGAGGTTGAACTCCAAAGGTTCATGATTAAGGAAGAAGTGAGTTTTGTC TATCCCCCCTACTTGCAAAAGCAGAGACGGATCATATTACCATAAAGTCATTAGCAACATGGGTGGTAAAGTCTTCTATA TATGTTCATATAGAACTTTGTTACAGTAATGAAGGATTTAAATATAGAGATCGCAATGGCAAAAATACTTATATTCCTCC TCACATCGCAGCTATTACTTGCGGGTTTCATGATTTTAAACACATGCAAGAATATATATATATATATATATATATATATA AATATATATATATATATATGTATATATGTATATATACATACATACATAGTACATACATACATATATAAAAAGCTGTCATC TTTGTGTTTGTAGTGCATCCATTTGATGTTGGTGATCGATGTGTTGCAAATGGTGTTTAGGTAAATCTATAGTACCTATA TTTTTATATTATTGATTGAGATTTGCATATTAATGTGTTATGATAACATGGCAGGTGTTGCTTGAAGAAATGAATATATT GACAATAGTCTTCTTGATGGCTTGATAACGAAAAGGTTTACTTGACAAACTCTGTCCTGGCCACAAAACCCATTAGCTAT TACAGAAGGCCATATATGGTTGACAATGTAGAGTTCTCAATTGATTTTATGACACCGGCCGGATAAAATTGGAGCACAGA AAGAAAAATAAAGAGGTATGCTTATTGTATCTTCATGGGTAAATCAGTAGGGTCTTTATTATCCTTTTTGTCTTGGGAAA CTTGAACTCCCTTCATTAGATGCATTTTCGTTATAGGATCATGTCATGGCTTCCAAGTTCCAAGTATTCTTTTGTCCATT CCTGGACAAAGTAATTCTTGCTATATAGTGAGCATGTTGTATTACCGTATTGTGAATTAAGATCTTGCTTTGAAGTTTGA TTGAGACTTAATGGTCCAATCCCCTTATTGTAAGTCAAGGTGTTCTTCTCAAATATGAAGATAGATAGGTGGTAAGTGGT AACAATTTTCCCAGGTTTTTTCAAAGTTGTTATTTGGAAATTAAAGGATGACTGGAGTTTTGTCGCGAAATTGGAACAAC TCTTATATTTCTGTTTTTCTTATTTCCAATGTCTTTTTTGAAAATTAGATAATTGGAGAGAACTCCGCAATTCTGGCATC CTGGTCACAACTTGGTAGTGATGTAGATTGAAAATGAGAATAAGACTAAGATGGTTCTCTTTGTTACCCACACAATGAAC TTTCAAGAGTTTGAGGAGAAGAGCAAGCAGAGAAGTGAGCTGGTGATGGAAATAAAGAAAATATGTGAAGAGCTCAATAT CAAATACAACCTTCTTCTGCTAGATGCTCATCTTAGGCATGTGGAACCAGAGGCAATAAAGCAGGGGAGGCTAATTTTTC CATAGGATTACACTCCCAAAACTCTTGGATGAAGATTTGAAGTCTGTTACATTATTTATATTCATTTGAAAATTGAAACC AAATTGGTTGGTGTCCCAAGAGTGCTCGAAGTTTCTTACTTTAATTTGTTATTTGTTATAATCAAAGAGAAAAACTCATG AAGCTAGCAATCAAGTAACATTTAGCTATACTGCCATCCAATATCACTTAAAATTCTTAAAAGTCACGTTTTATTAAAAC GATCAATGTACTTGGACATAAGCAAAAGTAACATTTAGCTAGTGCCATACAACATTATTATTATTGTTTTTATTATTCTA GTACCCTTCCAATAATGAACCAGC
CDS sequence (LotjaGi2g1v0194100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCTTTGTTTCGGTTAAGGTTTTTCTGGAACCCCTCTTGTCTTGTTCGCTCACACTCTCACTCTCCGCACCCTTT CATTCCCAATCACAACGCTGACGACGCCGTTTCCTCTTTCCTTCACATGCTCCATTTGCACCCTGCACCTTCCATCATCG AGTTTAACAAGATCTTAGGTTCCCTTGTGAAGATGAAGCATTACCCCATTGCTCTTTCCCTTTCTCAACAGTTGCAGTTC AAAGGAATCACACCCACCATTGTTACTTTGAGCATCTTGATTAATTGTTTCTGCCATCTGGGTCAGATGAGCTTCGCTTT CTCTGTATTGGGTAATATTCTCAAAAGGGGTTATCACCCAAACACCATAACGTTGAATACACTCATCAAGGGTCTGTGTC TTAATGGTGATGTTAGGAGAGCACTGCACTTTCATGATGTTGTGGTAGCAAAGGGATTTCAGCTGAACCAGGTTACTTAT GGGATTTTGATTAAAGGGTTATGCAAAGTGGGAGAAACAAGAGCTGCTTTGCAGTTGCTGAGACGGATTGAATCGCTGTC GGTTAAGCCTGATGTGGTAATGTATAGTACAATCATTGATAGCCTATGCAAAGATAAACTTGTCAATGATGCATGTGATT TATATCATGAAATGATTGTTAAGGGAATTTCTCCCAATGTTGTCACTTGTACTAGTTTAATATATGGATTTTGCATTGTG GGTCAATTGAAAGACGCAGTTCGTTTGTTCAATGAAATGGAATTGAATAACATTAAGCCAGATGTTTATAGTTTTAATGT ATTGGTTGATGGATTGTGCAAGGAAGGAAAGGTGAGACATGCTAAAAGTGTGTTAGCTGTGATGATAAAAGAAGGTGTGG AACCGGATTCTGCTACGTATAATACCCTAATGGATGGGTATTGCCTAATTAGTGAAATGACCAAGGCCCAAAATGTATTT AACTCTATGGCTCGAAGGGGAGTGACTCCTAATGTTCGAAGCTACAATATCATGATTAATGGGTTCTGTAAGGTTAAAAT GGTGGAGGAAGCCATGAACCTCTTCAAAGAAATGCATTGCAGAAAGCTTATTCCTGATATGGTAACATATAGTTGTCTTG TTGATGGTTTGTGCAAAGCAGGGAGAATCTCTCATGTTTGGGAGCTTGTTGATGAGATGCATGATAGAGGTCACTCGGCT AATGTAATCACCTACACTTCCTTATTGGATGGTTTATGCAAAAACCATCATTTTGATAAGGCAATTGCATTATTCATGAA AATTAAAGATCGCGGAATTCAGCCAGATATACACACCTACACAGTGATAATTGATGGACTATGCAAAGTTGGAAGGCTTA AGAATGCACAAGAGATTTTTCAGGTTCTTCTTAGTGAAGGCTACAATGTAGATGTCAAGACATACACTGTTATGATCAAT GGGTATTGTAAAAATGGTTTATTTGATGAAGCTCAGGCCTTGCTGTCAAAAATGGATGACAATGGTTGCATTCCTGATGC TGTGACTTTCGAAACAATAATTTGTGCTCTCTTTGAAAAAAATGAGAATGATAAGGCAGAAAGACTTCTTCATGAAATGA TTGCTAGAAATCTATTATAA
Protein sequence (LotjaGi2g1v0194100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSLFRLRFFWNPSCLVRSHSHSPHPFIPNHNADDAVSSFLHMLHLHPAPSIIEFNKILGSLVKMKHYPIALSLSQQLQF KGITPTIVTLSILINCFCHLGQMSFAFSVLGNILKRGYHPNTITLNTLIKGLCLNGDVRRALHFHDVVVAKGFQLNQVTY GILIKGLCKVGETRAALQLLRRIESLSVKPDVVMYSTIIDSLCKDKLVNDACDLYHEMIVKGISPNVVTCTSLIYGFCIV GQLKDAVRLFNEMELNNIKPDVYSFNVLVDGLCKEGKVRHAKSVLAVMIKEGVEPDSATYNTLMDGYCLISEMTKAQNVF NSMARRGVTPNVRSYNIMINGFCKVKMVEEAMNLFKEMHCRKLIPDMVTYSCLVDGLCKAGRISHVWELVDEMHDRGHSA NVITYTSLLDGLCKNHHFDKAIALFMKIKDRGIQPDIHTYTVIIDGLCKVGRLKNAQEIFQVLLSEGYNVDVKTYTVMIN GYCKNGLFDEAQALLSKMDDNGCIPDAVTFETIICALFEKNENDKAERLLHEMIARNLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 27 | 184 | 158 | 1.1E-32 | ||
| PANTHER | 32 | 260 | 229 | 6.5E-137 | – | |
| ProSiteProfiles | 51 | 85 | 35 | 7.278 | ||
| ProSiteProfiles | 86 | 120 | 35 | 9.679 | ||
| TIGRFAM | 88 | 122 | 35 | 3.1E-5 | ||
| Pfam | 88 | 117 | 30 | 0.0031 | ||
| Pfam | 120 | 169 | 50 | 1.3E-11 | ||
| ProSiteProfiles | 121 | 155 | 35 | 9.909 | ||
| TIGRFAM | 123 | 156 | 34 | 5.6E-4 | ||
| ProSiteProfiles | 156 | 190 | 35 | 11.301 | ||
| TIGRFAM | 158 | 192 | 35 | 4.3E-7 | ||
| Gene3D | 185 | 254 | 70 | 1.7E-22 | ||
| Pfam | 188 | 218 | 31 | 3.8E-10 | ||
| ProSiteProfiles | 191 | 225 | 35 | 12.036 | ||
| TIGRFAM | 193 | 227 | 35 | 4.9E-10 | ||
| Pfam | 225 | 274 | 50 | 1.2E-17 | ||
| ProSiteProfiles | 226 | 260 | 35 | 11.86 | ||
| TIGRFAM | 228 | 262 | 35 | 2.0E-8 | ||
| Gene3D | 255 | 323 | 69 | 7.3E-22 | ||
| PANTHER | 257 | 425 | 169 | 6.5E-137 | – | |
| ProSiteProfiles | 261 | 295 | 35 | 12.617 | ||
| TIGRFAM | 263 | 297 | 35 | 1.9E-8 | ||
| Pfam | 292 | 323 | 32 | 3.8E-8 | ||
| ProSiteProfiles | 296 | 330 | 35 | 12.244 | ||
| TIGRFAM | 299 | 332 | 34 | 9.1E-7 | ||
| Gene3D | 324 | 396 | 73 | 2.3E-24 | ||
| Pfam | 330 | 379 | 50 | 2.7E-18 | ||
| ProSiteProfiles | 331 | 365 | 35 | 12.891 | ||
| TIGRFAM | 334 | 366 | 33 | 5.3E-11 | ||
| ProSiteProfiles | 366 | 400 | 35 | 12.112 | ||
| TIGRFAM | 368 | 401 | 34 | 5.9E-10 | ||
| PANTHER | 386 | 537 | 152 | 6.5E-137 | – | |
| Gene3D | 397 | 462 | 66 | 2.8E-22 | ||
| Pfam | 401 | 449 | 49 | 9.3E-19 | ||
| ProSiteProfiles | 401 | 435 | 35 | 12.858 | ||
| TIGRFAM | 403 | 437 | 35 | 3.8E-9 | ||
| ProSiteProfiles | 436 | 470 | 35 | 11.082 | ||
| TIGRFAM | 438 | 471 | 34 | 5.4E-4 | ||
| Gene3D | 463 | 536 | 74 | 3.3E-19 | ||
| Pfam | 471 | 517 | 47 | 3.5E-13 | ||
| ProSiteProfiles | 471 | 505 | 35 | 14.063 | ||
| TIGRFAM | 474 | 507 | 34 | 1.0E-9 | ||
| ProSiteProfiles | 506 | 539 | 34 | 9.076 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0194100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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