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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0194500 |
| Transcript ID | LotjaGi2g1v0194500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G12300.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial; TrEMBL-Plants: tr|A0A151TEF2|A0A151TEF2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0194500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62764901..62766534) extracted from Lotus japonicus Gifu genome v1.2.
CGGGGATGTTATGGGAGAAAATCTTGATATAGTAATGCAATAATGCATTACTCACTCAGAGAAATAAATTTCTGATTTTG CCTCTTGCCTTGAGAACCCAACAACGAAACCACAGCCAGAGAGTGAGTGAGATCTTTGCACTACAATGTTGTCATTGTTT CGGTTAAGGTTGTCATTCTCTCACAAGGCTGACAACACCGTTTCCTCTTTCCTTCACATGCTCCATATGAACCCTCCCCC TCCCATCACTTTATTCGGCGAGATTCTAGGCTCTCTTGCGAAGAAGAACCATTGCTTCACTGTGATTTCCCTTTCTCGAC AAATGGAATTCAAAGGAATCACACCAAACATGGTTACTTCCACCATCTTGATCAACTGTTTTTGCCATTTGGGTCGAATC AACTTTGCTTTCTCTGTATTAGGCAACATTCTCAAAAGGGGTTATCACCCAAACACCATAACCTTCACTACACTCATCAA GGGCATGTGTCATAACGGCGAGATTAGTAAAGCAATGCACTTTCATGATGATATGATAGCTAAGGGGTTTCAGTTCAACC AAGTTACCTATGGGGTTTTGATCAATGGGTTATGTAAAGCCGGAGAAACAAAGGCTGCCCTACAATTGTTGAGACGAATT GAGGAGCTTGCGGTGCAACCTAATGCGGTCATGTATAATACTATAATTTATAGCCTCTGCAGAGATAAACTTATAACTGA TGCATTTGATTTATATTCTGAAATGGGTGTCAAGAGAATTTCTCCTAGTGTTGTCACTTACAATGCTCTAATCCACGGCT TCTGTGTTGCGGGTCAATTGAAAAATGCTGTTGGTTTGTTTAATGAAATGGAATTGAAAAACAACATCAAACCAGATGTT CATAGCTACAGTATCATGATTAATGGATTCTGTAAGGCTAAACGGGTGGATGAAGCCCTGGCCCTCTTCGATGAAATGCA TCACAAAAAGCTTATTCCTAATACGGTAACATACAATTCTCTTCTTGATGGTTTGTTCAAAGCAGGGAGAATCTCTTATG TTTGGGGGCTAGTTCATGAGATGCATGATAGAGGTCACTCAGCTAATATAATCACCTACACTTCCTTATTAGATGGTTTA TGCAAAAACCATCATCTTGATAAGGCAATGGTATTATTCATGAAAATTAAAGATCGCGGAATTCAGCCTGATATACACAC CTACACAGTGATAATTGATGGACTATGCAAAGATGGAAGGCTTAAGAATGCACAAGAGATTTTTCAGGTTCTTATGAGTG AAGGATACAACTTAGATGTCAGGACGTACACTGTTATGATCAATGGGTATTGTAAAGAAGGTTTACTTGATGAGGCTCAG GCCTTGTTGTCAAAAATGGAAGATAATAGTTGCACTCCTAATGCTGTGACTTTTGAAACAATAATACATGCTCTCTTTGA AAAAAATGAGAATGATAAGGCAGAAAGACTTCTTCGCGAAATGATTGCTAGAGGTCTATTGTAAGAATGTAACTAACTTG TGTTTGATGTTTTCTAGTTTTGTATAATGTTAAGTTGTACAACATGAAATGAACAATATAATAAAGATGACAACAAAGTT TATATTTGATATTCTATATTTTAGTTTTCTAGAG
CDS sequence (LotjaGi2g1v0194500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCATTGTTTCGGTTAAGGTTGTCATTCTCTCACAAGGCTGACAACACCGTTTCCTCTTTCCTTCACATGCTCCA TATGAACCCTCCCCCTCCCATCACTTTATTCGGCGAGATTCTAGGCTCTCTTGCGAAGAAGAACCATTGCTTCACTGTGA TTTCCCTTTCTCGACAAATGGAATTCAAAGGAATCACACCAAACATGGTTACTTCCACCATCTTGATCAACTGTTTTTGC CATTTGGGTCGAATCAACTTTGCTTTCTCTGTATTAGGCAACATTCTCAAAAGGGGTTATCACCCAAACACCATAACCTT CACTACACTCATCAAGGGCATGTGTCATAACGGCGAGATTAGTAAAGCAATGCACTTTCATGATGATATGATAGCTAAGG GGTTTCAGTTCAACCAAGTTACCTATGGGGTTTTGATCAATGGGTTATGTAAAGCCGGAGAAACAAAGGCTGCCCTACAA TTGTTGAGACGAATTGAGGAGCTTGCGGTGCAACCTAATGCGGTCATGTATAATACTATAATTTATAGCCTCTGCAGAGA TAAACTTATAACTGATGCATTTGATTTATATTCTGAAATGGGTGTCAAGAGAATTTCTCCTAGTGTTGTCACTTACAATG CTCTAATCCACGGCTTCTGTGTTGCGGGTCAATTGAAAAATGCTGTTGGTTTGTTTAATGAAATGGAATTGAAAAACAAC ATCAAACCAGATGTTCATAGCTACAGTATCATGATTAATGGATTCTGTAAGGCTAAACGGGTGGATGAAGCCCTGGCCCT CTTCGATGAAATGCATCACAAAAAGCTTATTCCTAATACGGTAACATACAATTCTCTTCTTGATGGTTTGTTCAAAGCAG GGAGAATCTCTTATGTTTGGGGGCTAGTTCATGAGATGCATGATAGAGGTCACTCAGCTAATATAATCACCTACACTTCC TTATTAGATGGTTTATGCAAAAACCATCATCTTGATAAGGCAATGGTATTATTCATGAAAATTAAAGATCGCGGAATTCA GCCTGATATACACACCTACACAGTGATAATTGATGGACTATGCAAAGATGGAAGGCTTAAGAATGCACAAGAGATTTTTC AGGTTCTTATGAGTGAAGGATACAACTTAGATGTCAGGACGTACACTGTTATGATCAATGGGTATTGTAAAGAAGGTTTA CTTGATGAGGCTCAGGCCTTGTTGTCAAAAATGGAAGATAATAGTTGCACTCCTAATGCTGTGACTTTTGAAACAATAAT ACATGCTCTCTTTGAAAAAAATGAGAATGATAAGGCAGAAAGACTTCTTCGCGAAATGATTGCTAGAGGTCTATTGTAA
Protein sequence (LotjaGi2g1v0194500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSLFRLRLSFSHKADNTVSSFLHMLHMNPPPPITLFGEILGSLAKKNHCFTVISLSRQMEFKGITPNMVTSTILINCFC HLGRINFAFSVLGNILKRGYHPNTITFTTLIKGMCHNGEISKAMHFHDDMIAKGFQFNQVTYGVLINGLCKAGETKAALQ LLRRIEELAVQPNAVMYNTIIYSLCRDKLITDAFDLYSEMGVKRISPSVVTYNALIHGFCVAGQLKNAVGLFNEMELKNN IKPDVHSYSIMINGFCKAKRVDEALALFDEMHHKKLIPNTVTYNSLLDGLFKAGRISYVWGLVHEMHDRGHSANIITYTS LLDGLCKNHHLDKAMVLFMKIKDRGIQPDIHTYTVIIDGLCKDGRLKNAQEIFQVLMSEGYNLDVRTYTVMINGYCKEGL LDEAQALLSKMEDNSCTPNAVTFETIIHALFEKNENDKAERLLREMIARGLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 166 | 158 | 2.4E-33 | ||
| PANTHER | 17 | 163 | 147 | 4.5E-120 | – | |
| ProSiteProfiles | 33 | 67 | 35 | 6.04 | ||
| ProSiteProfiles | 68 | 102 | 35 | 9.788 | ||
| Pfam | 70 | 99 | 30 | 0.0059 | ||
| TIGRFAM | 73 | 104 | 32 | 6.1E-5 | ||
| Pfam | 102 | 151 | 50 | 1.2E-15 | ||
| ProSiteProfiles | 103 | 137 | 35 | 11.203 | ||
| TIGRFAM | 105 | 138 | 34 | 1.7E-7 | ||
| PANTHER | 106 | 306 | 201 | 4.5E-120 | – | |
| SUPERFAMILY | 111 | 271 | 161 | 8.63E-6 | – | |
| ProSiteProfiles | 138 | 172 | 35 | 11.641 | ||
| TIGRFAM | 140 | 173 | 34 | 2.0E-6 | ||
| Gene3D | 167 | 237 | 71 | 3.8E-21 | ||
| Pfam | 170 | 200 | 31 | 3.4E-8 | ||
| ProSiteProfiles | 173 | 207 | 35 | 10.654 | ||
| TIGRFAM | 175 | 208 | 34 | 4.2E-7 | ||
| Pfam | 207 | 257 | 51 | 1.2E-19 | ||
| ProSiteProfiles | 208 | 243 | 36 | 10.753 | ||
| TIGRFAM | 210 | 245 | 36 | 1.0E-8 | ||
| Gene3D | 238 | 307 | 70 | 2.7E-23 | ||
| ProSiteProfiles | 244 | 278 | 35 | 13.537 | ||
| TIGRFAM | 246 | 280 | 35 | 1.1E-11 | ||
| Pfam | 276 | 306 | 31 | 4.6E-6 | ||
| ProSiteProfiles | 279 | 313 | 35 | 10.972 | ||
| TIGRFAM | 281 | 314 | 34 | 3.4E-8 | ||
| PANTHER | 302 | 450 | 149 | 4.5E-120 | – | |
| Gene3D | 308 | 376 | 69 | 1.3E-22 | ||
| ProSiteProfiles | 314 | 348 | 35 | 12.507 | ||
| Pfam | 314 | 362 | 49 | 2.4E-18 | ||
| TIGRFAM | 316 | 350 | 35 | 2.1E-8 | ||
| ProSiteProfiles | 349 | 383 | 35 | 11.224 | ||
| TIGRFAM | 351 | 384 | 34 | 1.4E-4 | ||
| Gene3D | 377 | 449 | 73 | 4.9E-20 | ||
| Pfam | 384 | 430 | 47 | 4.7E-14 | ||
| ProSiteProfiles | 384 | 418 | 35 | 13.526 | ||
| TIGRFAM | 387 | 420 | 34 | 1.1E-8 | ||
| ProSiteProfiles | 419 | 452 | 34 | 10.019 | ||
| TIGRFAM | 421 | 451 | 31 | 0.0017 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0194500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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