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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0194600 |
| Transcript ID | LotjaGi2g1v0194600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12700.1 RNA processing FACTOR; Swiss-Prot: sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial; TrEMBL-Plants: tr|A0A151TEF2|A0A151TEF2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0194600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62767923..62773210) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAAATGAAACCCCAAACCCAGAGACAGTGAGTGAGACCAATGTTGACGACGATGTCGTTGTTTCGTCCAACGTTGTT TGTCTCCACCATCCCCTCTTTTCTTCTTCGCTTCTGCCACTCTCACTCTCACTCTCACTCTCACATTGACGACGCCGTTT CCTCATTCCTTCACATGCTCCATTTGCACCCTGCACCGCCCATCATCAAGTTCAACAAGATCCTAGGTTCCCTTGTGAAG ATGAAGCATTACCCCACTGCTCTTTCCCTTTCTCAGCAATTGCAATTCCAAGGAGAAATCACACCTGATATTTTCACCCT CAACATCTTTATCAATTGTTACTGCCACATGTGTCAAACCAGCTTCGCATTCTCTGTATTAGGCAACATTCTCAAAAGGG GTTATCACCCAGATGCCATAACTTTCACTACACTGATTAAGGGTATGTGTCTTAATGGTGAGGTTAGGAAAGCATTGAAC TTTCATGATGATGTGGTTGCAAAGGGGTTTCAGTTAGACCATGTTGGTTATGGGACCTTGATCAATGGGTTATGTAAAGT GGGAGAAACAACGGCCGCCCTACAGTTGCTGAGACGAATTGAGGACCACACGGCGGCTCGACCTGATGTGGTAACGTACA CCACAATCATTGATAGCATGTGCAAAAATAAACTTGTGAATGATGCATTTGATTTATATCATGAAATGATTGTCAAGGGA GTTTCTCCCAATGTTTTCACTTACAATGCTCTTGTCTATGGGTTTTGTGTTGCGGGTCAATTGAGAAAAGCAGTTGGTTT GTTCAGTGTTATGAAAATGGAAAATGTCAAGCCGGATGTTTATACGTTTAGTACATTGATTGATGGCTTGTGCAAGGAAG GAAATGTGAAACAAGCTGAAAATGTCTTAGCTTTGATGATAAAAGAAGGTGTGAAACTGAATTTTGTTATTTATAATACC TTAATGGATGGCTACTGCCTAATTAATGAGATGAGTGAGGCTGAGTATTTGTTCAAAAGTATGGCTCGAGGGGGAGTGAC GCCAGATGTTCAGAGCTATAGTATCATGATTAATGGGTTCTGTAAGGCTAAAATGGTAGGCGAAGCCCTTAATCTCTTTA AAGAAATGCATTGCAAAAAGCTTGTTCCTAATACAGTAACATATAGTTGTCTTATTGATGGTTTGTGCAAAGCAGGGAGA ATCTCCAATGTTTGGGAGCTTGTTGGTGAGATGCATGATAGAGGTCACTCAGGTAATATAATCACCTACAATTCCTTATT AGATGGTTTATGCAAAAACCATGATCTTGATAAGGCTATGGCATTATTCATGAAATTTAAAGATCACAGAATACAGCCAG ATATGTACACCTACACGGTGATAATTGATGGACTGTGCAAAGGTGGAAGGCTTAAGAATGCGATAGATGTATTTCAAGTT CTTTTGAGTAAAGGCTACAATTTAAATGTCAAGACGTATAATGCTATGATCAATGGGTATTGTAAAGAAGGTTTATTTGA TGAAGCAGAATCCTTGATGTCAAAAATGGAAGACAATGGTTGCATTCCTGATGCTGTGACATTTGTAACAATAATTTCTG CTCTCTTTGAAAAAAATGAAAACGACAAGGCAGAGAAACTTCTTCATGAAATGATTGCTAGAGGTCTATTGTAAGGGTGA GTTATGACTTATGAGAATATACTATACTCTTCTTCTAATGTCTCACTACCTAGTTAGTTCTTCAATTTTATTAAGTGTTT GTTTTCTTTTATGATTGTTAGATGTTAGATAGTTGAGTTGTGCATTCTTTTATGTCAATTGTGGTTCAATTATGGATTAG CTCTCCTAAAATTATAGAACTACTCACTGGTTAATATGATAATAGAACCAATTATATGTTCCTTTCAGATTTCAGGTCTT TTCCCCCGCTTAACTTGTAGACTTCTATCATGATATCGAGATCAAGTTTCTGATCCATGGATCCAGAGCATCTCTCTCTT AATGCCTCTCTTCCAGATTTCAGTTTTTCTGTTTTCTAGATTTCAGATACTTCTATCAGAAACTAACTTAGATAGTTTCT AGTTTAGTAGTCATACAGCTTAAAATTAACAATATAAAATGCTTAAAACTGAGTTTATTTTGCAGTTATATCCCTATCTT AATGTTGTTGAGAAGCAGAAAATATTGGCTCTACATGAAAATGCTTACCGTTAATGCAATAAGAACACTGGGAATACTAA GCCTCCACTGCTGCCAACGGAGAGGATGCTGTGAACGTTGAGTTCTGGTGCTGCCAAGGCCAAAAAAGAATCCCGCACCA GTGTAAGTTTCCTTCCTGTATGTAAATTTCACTATTTTATATATTATCATATGCTATGCTGTACATATCCTTTGTTTTGT GAAATGCCTCTCAGAGCTTTCTCTCTACCAACCGAAAGTATTTGTCCCTGTTGTTTCATTGATTTTCCTCACTTGAGAAC TTTCACCTTAACAGGATAAGTTGCATTACGGACAGAAACATCAGTTTGGAGAAATAAAAATTCACTTTATATATAATCGC AACACATCATTGGAAAACTTATGCTTCTCTTTATATTTCATTGGAACTGTTTCATGCTTCTTAGTGTTTTTATTTGGAAT TTCACTTACAGTCATAGCTTAAATGGTAGACCTTACGGGGCATATGTTCTAAGTTCCTTTTTTATCTCTCTTAGAAATTA CGTTTAACTAGATATAAATCTGTTTGTTTATCTCTTGCCATCAATGAATTAGAGTCATTGCTTCTGGATAAGCACAAATT ATTGGATTGACTAACAATGAACTATTAAACTTTAATTTGGTTGCTGATTTTAGAAATTAGTATACTATTCAGGGTGCTTT AATGCATTTCTTGCAAATTGCTATCCAAGCTTTGCACACCTATGACATTGCGAGCATCCTATTATGAAATGTAGCTTTCT AGTTCTTAAGGACTTGTGCGATTTCAATTTTCATCCTCTTTGAATTCCATGTTATCAATTTTAATTGTAAAAATGCCTCT TTGTTTTCACCTTATTTCCAGATTTTAAAATTTTGTTAAGACAATCTTTGTGTTTAAATAGAAAATGAAGTAAAAAATAA AGAGCATTTTTTACGATTAAAACTAAAATAACAAATGAAAATAGAAAACAAAATGTTGCCAAGAGCCCAACATGTGTTTT CTTGAGGAACAACTATCTTCATCACAATGATTATCATTTTCTATTCTAGGCTAAGAAAAAGCAAAAGTGTAATGTATATT TTCCTTGTTCAAATAGTATATTTTCCCTTTTCACAAGGATCCATCTCCATCAATCCTAGTGAAAAAATTTCTTGATTCAA GGTCATGATTTTTAGCTCTATCACATTTTTTTGGTTATCATCCTCATTAATTTGATGAACCTTTTGGAGGATTCTTGGTT CTTGTAATAGATAACTTAAGGTTATGTTTTTATTTCTAGAAGCAGTACCTTCCAAATATGAACAAAAACATCCCCAGGGC AGAGGAGAAGTTCAAAGAGACAAGTGCTGAATTATACGAGGTGATTCTTATGAACAAATTGAAATCACAAGCCCTTTTCA CTGTTATTTTAATGAGTTGAAGATATATTTTTTCATTGGAAGGACAAGTTGAAGATATATTTTTTCATTGGAAGGACAAT GAGGAACAGGAAAAGTGGAGAAGTGATCTCAATCTGAAAAGATATTTTTATTCTTAAAGCTCTTAGTAAACATTCAGTTG AAACCATTCTATTCCTTTAATTATTTATCGGTGCACATTACTTGCTGCATTCGAGATTTGATGTAGTTCCATCAAGATTT TTGTCTGCTTTTTCTATGTCCGATGATTTTCATATACTCCTTTCAATGAATCATTAAGAAAAGCATGACCATTAAGAAAA TTGTGATCTTTGATTTAGTTTCAAACTTTCAATGTGGCTGAACTATTTTGAGGTCTTTCTAGTTTCGCAAAGTTGAAGTT ACTTATGATTTGATTGCTTGCTGTTACTACAATTTTAGGTCGATAATTTAATTCTTTCTCATGAGTGCAGGTTAGATTTA AAGTTCAACAGCATGTCAAATAAAGTAACAGTTTTGTTCCAGTAAAATTTGGTAGCAAATTTTATTATCTAGAAATAAAA ATAAATAGTTTTCTGTCATCTCTTTTTGTAGTGACTTGTTGCATTTATTAGTATAATACAAAACAAAGTAGTTCAATTTA TTGATAAATAAAATAAAATGTCGATGATGAAGTTCTAGTTTAATGTAGTATTTATATTTGATTTATTTACATAAATATGA AAGTTTGCTATAGTTGGTGAACTGATATGTATTACATATCAAACCTGTTTAGACTTCAACAACACCTTCTATTCCCTGCT GTTGTTGCATTGGTGAAAAATGTTTTTACTTCCTTGAGTACCCAAAAGTTTATTAATAAGGTGAGAACTTGTAATACATG GTTTCCTTTCGTAGTGGGGTGTTTGATTGGTTTGGTTTTCTTTGGGCTGTCCTCTCTTTCTGGAGGATGATTTGTTCTTA CTGAGAAGGGTTGTTTCTCATTCCTTTCTCTTTATCTATATATGATTTTGCTTTAAAAAAAATACATGACTTCTTTTCCA TCTTGTAATACAAATACATGGCCATACTTAAGGTGGTTTTAGACTTTTAGTTGTGTTTATTTGTCTTTGAAGTTTGCTTG GGTTTCCCAGGTACCAGGTGGTTGACACTACTGTATTTAAACCCTGCAACATTGATATGGAATTTCAATATTTAACCAGA GCAGAAGAATTGCTAACTTGCTATTACTACACTTTTGAAGGCAGGAAATGAATCAAGCTTAGATCGTCTTATGAAGCAGA TTACAAATTTTATGTCTGGTATTGCTGATGAGTTCAGAATTGTTGTTGTTGAAGCAATAAGATCTTTGTGCCAGAATCGA TCTCTGTTTGTGTCTTGTATTGTAGTTTTCCTCGCCCCATATGTTCTTACATTTTGTTTTCCTATATGAATGGTCTAAAT TATTGGTTTGTATCCTGCTATTATCTTCCAGATGAACTTCTTGAGTAACATTCTTAGAGAAGAAAGTGGGTTTTCTTACA AAAAGGTTGTGGATTCAATTGTGATTCTCATTACAGAGTTCACAGATGCAAAGGAAACTGGATACCTTCATATTTGTGAT TTCACTGAGGATTGCGAATTTTCTTATTTTGGTACAGCCTTGATAAGAGACTAGTTTGAAAAATTATGTAAATCTCGGAA TTTTCTTG
CDS sequence (LotjaGi2g1v0194600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGACGACGATGTCGTTGTTTCGTCCAACGTTGTTTGTCTCCACCATCCCCTCTTTTCTTCTTCGCTTCTGCCACTC TCACTCTCACTCTCACTCTCACATTGACGACGCCGTTTCCTCATTCCTTCACATGCTCCATTTGCACCCTGCACCGCCCA TCATCAAGTTCAACAAGATCCTAGGTTCCCTTGTGAAGATGAAGCATTACCCCACTGCTCTTTCCCTTTCTCAGCAATTG CAATTCCAAGGAGAAATCACACCTGATATTTTCACCCTCAACATCTTTATCAATTGTTACTGCCACATGTGTCAAACCAG CTTCGCATTCTCTGTATTAGGCAACATTCTCAAAAGGGGTTATCACCCAGATGCCATAACTTTCACTACACTGATTAAGG GTATGTGTCTTAATGGTGAGGTTAGGAAAGCATTGAACTTTCATGATGATGTGGTTGCAAAGGGGTTTCAGTTAGACCAT GTTGGTTATGGGACCTTGATCAATGGGTTATGTAAAGTGGGAGAAACAACGGCCGCCCTACAGTTGCTGAGACGAATTGA GGACCACACGGCGGCTCGACCTGATGTGGTAACGTACACCACAATCATTGATAGCATGTGCAAAAATAAACTTGTGAATG ATGCATTTGATTTATATCATGAAATGATTGTCAAGGGAGTTTCTCCCAATGTTTTCACTTACAATGCTCTTGTCTATGGG TTTTGTGTTGCGGGTCAATTGAGAAAAGCAGTTGGTTTGTTCAGTGTTATGAAAATGGAAAATGTCAAGCCGGATGTTTA TACGTTTAGTACATTGATTGATGGCTTGTGCAAGGAAGGAAATGTGAAACAAGCTGAAAATGTCTTAGCTTTGATGATAA AAGAAGGTGTGAAACTGAATTTTGTTATTTATAATACCTTAATGGATGGCTACTGCCTAATTAATGAGATGAGTGAGGCT GAGTATTTGTTCAAAAGTATGGCTCGAGGGGGAGTGACGCCAGATGTTCAGAGCTATAGTATCATGATTAATGGGTTCTG TAAGGCTAAAATGGTAGGCGAAGCCCTTAATCTCTTTAAAGAAATGCATTGCAAAAAGCTTGTTCCTAATACAGTAACAT ATAGTTGTCTTATTGATGGTTTGTGCAAAGCAGGGAGAATCTCCAATGTTTGGGAGCTTGTTGGTGAGATGCATGATAGA GGTCACTCAGGTAATATAATCACCTACAATTCCTTATTAGATGGTTTATGCAAAAACCATGATCTTGATAAGGCTATGGC ATTATTCATGAAATTTAAAGATCACAGAATACAGCCAGATATGTACACCTACACGGTGATAATTGATGGACTGTGCAAAG GTGGAAGGCTTAAGAATGCGATAGATGTATTTCAAGTTCTTTTGAGTAAAGGCTACAATTTAAATGTCAAGACGTATAAT GCTATGATCAATGGGTATTGTAAAGAAGGTTTATTTGATGAAGCAGAATCCTTGATGTCAAAAATGGAAGACAATGGTTG CATTCCTGATGCTGTGACATTTGTAACAATAATTTCTGCTCTCTTTGAAAAAAATGAAAACGACAAGGCAGAGAAACTTC TTCATGAAATGATTGCTAGAGGTCTATTGTAA
Protein sequence (LotjaGi2g1v0194600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTTMSLFRPTLFVSTIPSFLLRFCHSHSHSHSHIDDAVSSFLHMLHLHPAPPIIKFNKILGSLVKMKHYPTALSLSQQL QFQGEITPDIFTLNIFINCYCHMCQTSFAFSVLGNILKRGYHPDAITFTTLIKGMCLNGEVRKALNFHDDVVAKGFQLDH VGYGTLINGLCKVGETTAALQLLRRIEDHTAARPDVVTYTTIIDSMCKNKLVNDAFDLYHEMIVKGVSPNVFTYNALVYG FCVAGQLRKAVGLFSVMKMENVKPDVYTFSTLIDGLCKEGNVKQAENVLALMIKEGVKLNFVIYNTLMDGYCLINEMSEA EYLFKSMARGGVTPDVQSYSIMINGFCKAKMVGEALNLFKEMHCKKLVPNTVTYSCLIDGLCKAGRISNVWELVGEMHDR GHSGNIITYNSLLDGLCKNHDLDKAMALFMKFKDHRIQPDMYTYTVIIDGLCKGGRLKNAIDVFQVLLSKGYNLNVKTYN AMINGYCKEGLFDEAESLMSKMEDNGCIPDAVTFVTIISALFEKNENDKAEKLLHEMIARGLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Gene3D | 27 | 190 | 164 | 6.3E-30 | ||
| Phobius | 28 | 543 | 516 | - | – | |
| PANTHER | 35 | 186 | 152 | 1.8E-147 | – | |
| PANTHER | 35 | 186 | 152 | 1.8E-147 | – | |
| Pfam | 88 | 136 | 49 | 1.2E-10 | ||
| ProSiteProfiles | 89 | 123 | 35 | 9.229 | ||
| TIGRFAM | 91 | 125 | 35 | 6.2E-5 | ||
| ProSiteProfiles | 124 | 158 | 35 | 10.326 | ||
| TIGRFAM | 126 | 159 | 34 | 3.1E-5 | ||
| Pfam | 154 | 185 | 32 | 1.0E-6 | ||
| ProSiteProfiles | 159 | 189 | 31 | 8.692 | ||
| TIGRFAM | 163 | 187 | 25 | 9.7E-4 | ||
| Gene3D | 191 | 256 | 66 | 4.9E-21 | ||
| PANTHER | 191 | 287 | 97 | 1.8E-147 | – | |
| PANTHER | 191 | 287 | 97 | 1.8E-147 | – | |
| Pfam | 194 | 242 | 49 | 2.3E-18 | ||
| ProSiteProfiles | 195 | 229 | 35 | 12.748 | ||
| TIGRFAM | 197 | 231 | 35 | 7.6E-11 | ||
| ProSiteProfiles | 230 | 264 | 35 | 11.992 | ||
| TIGRFAM | 232 | 266 | 35 | 2.1E-7 | ||
| PANTHER | 254 | 385 | 132 | 1.8E-147 | – | |
| PANTHER | 254 | 385 | 132 | 1.8E-147 | – | |
| Gene3D | 257 | 328 | 72 | 5.2E-22 | ||
| SUPERFAMILY | 259 | 505 | 247 | 1.23E-6 | – | |
| Pfam | 261 | 292 | 32 | 2.3E-12 | ||
| ProSiteProfiles | 265 | 299 | 35 | 12.189 | ||
| TIGRFAM | 267 | 300 | 34 | 1.8E-8 | ||
| PANTHER | 288 | 430 | 143 | 1.8E-147 | – | |
| PANTHER | 288 | 430 | 143 | 1.8E-147 | – | |
| Pfam | 300 | 348 | 49 | 6.1E-16 | ||
| ProSiteProfiles | 300 | 334 | 35 | 11.718 | ||
| TIGRFAM | 302 | 336 | 35 | 2.1E-8 | ||
| Gene3D | 329 | 400 | 72 | 2.3E-24 | ||
| ProSiteProfiles | 335 | 369 | 35 | 12.419 | ||
| TIGRFAM | 338 | 371 | 34 | 1.1E-10 | ||
| Pfam | 366 | 397 | 32 | 4.0E-10 | ||
| PANTHER | 367 | 541 | 175 | 1.8E-147 | – | |
| PANTHER | 367 | 541 | 175 | 1.8E-147 | – | |
| ProSiteProfiles | 370 | 404 | 35 | 11.509 | ||
| TIGRFAM | 372 | 405 | 34 | 6.9E-9 | ||
| Gene3D | 401 | 466 | 66 | 2.3E-19 | ||
| Pfam | 405 | 453 | 49 | 1.8E-17 | ||
| ProSiteProfiles | 405 | 439 | 35 | 12.244 | ||
| TIGRFAM | 407 | 440 | 34 | 6.2E-8 | ||
| ProSiteProfiles | 440 | 474 | 35 | 11.301 | ||
| TIGRFAM | 442 | 475 | 34 | 2.9E-6 | ||
| Gene3D | 467 | 540 | 74 | 7.7E-20 | ||
| ProSiteProfiles | 475 | 509 | 35 | 14.853 | ||
| Pfam | 475 | 521 | 47 | 1.0E-15 | ||
| TIGRFAM | 478 | 511 | 34 | 1.3E-12 | ||
| ProSiteProfiles | 510 | 543 | 34 | 9.887 | ||
| TIGRFAM | 512 | 542 | 31 | 0.0015 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0194600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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