Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0197100 |
| Transcript ID | LotjaGi2g1v0197100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|A0A0L9UTZ7|A0A0L9UTZ7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0197100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63203313..63206436) extracted from Lotus japonicus Gifu genome v1.2.
TCAATCAAGTTCATACATAAAATCATGTCAAAGCTATGGCCTACACATGCTACCCAACTCCTAGGACCAGCCCTTACCTT GATTAAGAGTGAAGAAATCAGAAGTTGGGTGATGAAGAAGGGATCAAAAGCTGCTGTCCAAGACCCTCTCTTCCCTCCTA CTCGAGCTCTCTCTCTTGCAGGTCTCCCTCTCTCTCTCGTGCGCGCACAAGGTGGCGGTGGTGGCTTGGTCGGCGGCGGC TAAGGGTGCAAGGGGTGGTTCTCTCACTCTTTTCTCTTCTGTTTTCTTTACGTAAGGAGTGCAAGGGTTTCTGTTTCAGA ACTGAATGGAAAAGAAACTTTTCCCCCCTTCAAGACCCTAATACAACCGCGGGCTCCCCCTCTTCATGGGCTTGGGTTTC TTTTCTTTTCTCTTGAGCCCGCTCCAAGTCAAACCCTTGACCCAATAACTTAAGCACTTAATCAGACCTGAATCTAATTA AAAACTTAAGCCCTCTTAAGTAATTTCATAATCAAATTCGGAATTAGAAGAAAACAAACTAATTTACTCGCTGGTACTGT ACAGCCGGAACCACCGTCGCTTAAACGCGAATATCTCGAGCTACAGAGGTCGGAATGACTTGATTCCACTTCGAGAATTT TCCTAACTTAAAGGGCTACAACTCCCATGAAGGAAGGTTTCCCAAAAGAGGTCGTTATGACCCTCTAAAAATCCACACAA GTTGACAGCTATAATCTGTCAATTTACAAACTTGGCCAAAAACCTCATTTTTATTCAATTTTTTCTCAAAAACGATACAA AATGAATTTAGGGCCTTACAGTAGCCCAGGTGATGCAGCGAGCAGCTCCGTTCGTCCCTTGTGTTGTAGCAAGAAGCTCC TCCGGGTGGTCGCAACCTACAGTCCTCTTGGCGGAAACCGGCGGCTAGTACTTTCAAGGTAAACTTTGATGCTTCATTGC AAAATTTGTCTGAGAAGGGTGTGGAGCCAAATTTGGTTTCTCTGAACACGGTTATTCAGGGTTTACGAGGGCCGAGAGAG GTTGAGGCGGTGTTTCATGAGATGAAATTCTGATTCTTTCAATGCAGTCATTCACGGGTTACGGTGTTTGAGGAGATGAA ACGAAAGGGTTTTGCACCTGATGAGAAGACTTACACGTCTCTCATTGATTTGTTCTGCAACCAGAGTGAGAGTGAGAAGG CTTATAAGGTTTTGCGTGAAATGATTGATAGAGGATTTTCACCTTCAGTTGTTGAATACAACAAGCTTATTGATTCATAC TGCACTTTGGGGTATTGCCAAACCCATAATCTGGAGAAGGTGTTTGAAATCAAGAAGGAGATGCTTCACAAGGGCTTCTT GCCTGATGCTGACAACTATTCGATGCTTTTACGCTTCGCGAGGGTGTGGAGCCAATGGCGTATGCTTATGTTAATTTGAT GGGTCCATATTGTGATAAAGGTGAATTCAGTAAGGCTTTTCATATGCATGATCAAATGATACACAAGGGTTTTTTGCCTG ATTTTGTTACTGAGTTTTCACCGTCTCTTGTTACGTGCAACGCGCTTATTCACGGGCTTGGCTTCTTCGGGAGGGCTGAG GAGGCTCTGGAGATTTTGAGGGGCATGCCTGAGATGGGTTTGTTCCCTGATACTGTTAGTTTTACCGCTGTTGTATCTGG GTTTTTCCGAATCGGGGAGCTGAGGAAGGCGTATGATTTGAAGCTGGAGATGGATGAAATGATGCAGAGTAATAATATGT TGGCTATCCAGCCCCTGTCTGGAGACGTGTATTGGTCACTTATGGGCAAACAAGGCGGCCTGTTGGATGAGGTTAATTAT ACTAGTTTGATAAATGCTTATTGTGCTGACGGTGAAGTGGTTAAGGCAAAGACTTTGCTTGATGAATTGACACACTTTGG TGATGTGCTTATTAGTGGGCTTGATAAGAAAGCTAGGACACGAGAAGCTAAGAAGATGCTTCTGAGCTTGGTTTATCATT TGTGTACGAGTAGTTGGCCAACTTTAACATTTGATACTCTGATAGAGAACTGCAGTAATAATGAATTTACGAGTTTGGTA GAGCTTGTCAAAGGTTTCCGGATTAGGGATTTAGAGAATGAAGCAGCCAGTGTTTTAAACACAATGCTTCATTGGAATGA TAAGCCAGATGGAGCAGTTTATAATTTCTTAATTGTTGAACATTGTAGATGTGATAATGTTGATAAGGCATATGATATGT ACATGGAGATGGTGCATTGTGGTTTTGCATCTCACATGTTCTCTGTACTTGCTCTTATTAAGACTCTATATTATGGTAGA AGGTACAATGAGATGAGTTGGGTAATTGAAAACACACTGAGGAGCTGTAATCTCAATGGTTCTGAGCTACATAAAGCACT TAATGAAATTGACGTCAGGAGAGGTATATTTAAAGATGCTCTTTTGAATGTTCTTGCTGAAATAGCCATGGATGGCCTGT TACTTAATGGTGGAAAGTGTTCATATGCTCCAGAAAATGCCTAATATATTTGGTTTTGCTAGTTGAACTCTGTTACCATA AACTTTAAGTAGAAATTGTTTTTTTTTTCCTTTTCTTTATCAGAAACTTTCCGTGTTCTGCTATAATCTTCACATCGATT TCATGCTTCGGTTTTCCTTCTTTTTTCTTTGTATTCTGTTTGTTACTACTACTCTTCTCATTGGCCTGTGATGCATCAAT TTGTCCGTACCATCTGAGATTTCTCTGATCGATACTCCAATTCCTAAATCTGAGGCCATTTCGTTGAAGGATTTTTCTGA TCTTAATCACTGATTTGATTTTTAGGTTTTCTGTATGAATGAATGCTTGCTTGCTTGTGAATGAAAGAGGCAACAAATTA GAGTCGCTGATTCGTTAACTCCATAGCGAAATCAGTGCTGTACGTTGCCTATAGAAATTTGGTGCTGAGATTCTGGCATT TGTCTCCTTAGGCCCATGCATTCAGACGTTCCTACACTTTTATTACTTCGAAAATCACTATTGCTATGCTGTGACAAAGA ACGATTACTGGTTTGTGCTTTCTAGTTATAAGGATTTTTTTGATCTTAATCATCTATTGCATTTTTGTGATCTTTAGGTT TTCT
CDS sequence (LotjaGi2g1v0197100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTATGCTTATGTTAATTTGATGGGTCCATATTGTGATAAAGGTGAATTCAGTAAGGCTTTTCATATGCATGATCA AATGATACACAAGGGTTTTTTGCCTGATTTTGTTACTGAGTTTTCACCGTCTCTTGTTACGTGCAACGCGCTTATTCACG GGCTTGGCTTCTTCGGGAGGGCTGAGGAGGCTCTGGAGATTTTGAGGGGCATGCCTGAGATGGGTTTGTTCCCTGATACT GTTAGTTTTACCGCTGTTGTATCTGGGTTTTTCCGAATCGGGGAGCTGAGGAAGGCGTATGATTTGAAGCTGGAGATGGA TGAAATGATGCAGAGTAATAATATGTTGGCTATCCAGCCCCTGTCTGGAGACGTGTATTGGTCACTTATGGGCAAACAAG GCGGCCTGTTGGATGAGGTTAATTATACTAGTTTGATAAATGCTTATTGTGCTGACGGTGAAGTGGTTAAGGCAAAGACT TTGCTTGATGAATTGACACACTTTGGTGATGTGCTTATTAGTGGGCTTGATAAGAAAGCTAGGACACGAGAAGCTAAGAA GATGCTTCTGAGCTTGGTTTATCATTTGTGTACGAGTAGTTGGCCAACTTTAACATTTGATACTCTGATAGAGAACTGCA GTAATAATGAATTTACGAGTTTGGTAGAGCTTGTCAAAGGTTTCCGGATTAGGGATTTAGAGAATGAAGCAGCCAGTGTT TTAAACACAATGCTTCATTGGAATGATAAGCCAGATGGAGCAGTTTATAATTTCTTAATTGTTGAACATTGTAGATGTGA TAATGTTGATAAGGCATATGATATGTACATGGAGATGGTGCATTGTGGTTTTGCATCTCACATGTTCTCTGTACTTGCTC TTATTAAGACTCTATATTATGGTAGAAGGTACAATGAGATGAGTTGGGTAATTGAAAACACACTGAGGAGCTGTAATCTC AATGGTTCTGAGCTACATAAAGCACTTAATGAAATTGACGTCAGGAGAGGTATATTTAAAGATGCTCTTTTGAATGTTCT TGCTGAAATAGCCATGGATGGCCTGTTACTTAATGGTGGAAAGTGTTCATATGCTCCAGAAAATGCCTAA
Protein sequence (LotjaGi2g1v0197100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYAYVNLMGPYCDKGEFSKAFHMHDQMIHKGFLPDFVTEFSPSLVTCNALIHGLGFFGRAEEALEILRGMPEMGLFPDT VSFTAVVSGFFRIGELRKAYDLKLEMDEMMQSNNMLAIQPLSGDVYWSLMGKQGGLLDEVNYTSLINAYCADGEVVKAKT LLDELTHFGDVLISGLDKKARTREAKKMLLSLVYHLCTSSWPTLTFDTLIENCSNNEFTSLVELVKGFRIRDLENEAASV LNTMLHWNDKPDGAVYNFLIVEHCRCDNVDKAYDMYMEMVHCGFASHMFSVLALIKTLYYGRRYNEMSWVIENTLRSCNL NGSELHKALNEIDVRRGIFKDALLNVLAEIAMDGLLLNGGKCSYAPENA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 35 | 35 | 9.756 | ||
| Gene3D | 2 | 123 | 122 | 2.1E-20 | ||
| Pfam | 8 | 33 | 26 | 0.13 | ||
| TIGRFAM | 12 | 36 | 25 | 2.9E-4 | ||
| PANTHER | 41 | 108 | 68 | 2.0E-30 | – | |
| PANTHER | 41 | 108 | 68 | 2.0E-30 | – | |
| Pfam | 43 | 91 | 49 | 6.7E-9 | ||
| ProSiteProfiles | 44 | 78 | 35 | 11.082 | ||
| TIGRFAM | 46 | 80 | 35 | 2.6E-5 | ||
| ProSiteProfiles | 79 | 109 | 31 | 8.035 | ||
| Pfam | 136 | 164 | 29 | 2.7E-6 | ||
| ProSiteProfiles | 138 | 172 | 35 | 9.339 | ||
| TIGRFAM | 142 | 165 | 24 | 2.0E-4 | ||
| Gene3D | 201 | 337 | 137 | 5.3E-9 | ||
| PANTHER | 206 | 306 | 101 | 2.0E-30 | – | |
| PANTHER | 206 | 306 | 101 | 2.0E-30 | – | |
| ProSiteProfiles | 252 | 286 | 35 | 9.58 | ||
| Pfam | 255 | 284 | 30 | 6.8E-4 | ||
| TIGRFAM | 255 | 284 | 30 | 7.3E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0197100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…