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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0212300 |
| Transcript ID | LotjaGi2g1v0212300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nudix hydrolase 20; TAIR: AT5G19460.1 nudix hydrolase homolog 20; Swiss-Prot: sp|Q8VXZ0|NUD20_ARATH Nudix hydrolase 20, chloroplastic; TrEMBL-Plants: tr|A0A0S3TCF3|A0A0S3TCF3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0212300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:66060731..66067617) extracted from Lotus japonicus Gifu genome v1.2.
GGATCACAAAGACAAATCCAGAACAGAGTGATGGGAGTGTCAACATGCTGTCTGTTCAAGTTTGCTACCTTGTGCAGCAG CATCAGGTCACGACCCTTCTCCTCGCTCTCTTCTTCATCCACACCCTCTCACCCTTTTCCCTCCTGCTCCACCTTCTCAC CAAAAGCTTCCATCAAGCACAATCTTGTTTCTTCATCATTCACATGGAACAATGTCTTTCGCATTTCTGAACCCGAAGCT TCCACTCAGGACCACTCTTGTCATCTCCAAGGCTACTTCAACAAAGTCCAACTCTGCAATCGTGGTTCTGTGAGTTCTCA CCACTGTTCTGTTATTATGCTTCCTCAGAGAAGACAATGAATGATGTGAATTATAGTTAATATTTTACTATTCTGCCCAC TGAAAATGGATAATACTACCCATTTGTCTCCTATTTTCAGAACCCAAAAAGTTCTTGAGATTACCCAACTATGCATTTGT GCATCATAGTCTGATTTATTTTGTTCCTGTGTAATGTACTGCATTGATGGGGTGACCCTAGTCATAGTCTGATTTATTTT GGAACTGCTTACAGGACAAACAATCTGAATTCCTTCCATTTGTCATTGAGGGCCAAGTTGTTGGATTCATTCACAATGGG TAAAGTTTAGTCTGACTCTATCTTTTCCTTGTAAGATACTTTGTGTGTGTCATGTCATGCTTACTTGCTTAGGTACTCGT GAATGTTTCATTCGTTGAACTTGTTGGGTTCCAGCTGAATCAATTCTTTAGCTTGTGCTTATATATTGTGAAATGAATGC TGCACTTGCACCTGGGCTAATTGTGGCACATTTTTTTGGTAAACTTCAAAATGTTTCAGGTTTGTTGAGCATTTGAGAGG CTTTGGCGATGTGTTCATTTTCCCCAATGATGGAAGCCCCCTTGGTAACTGTGTTTCATTGCATCCATTGCTGAAGACAG CTGAGGAAAGGACCAGCGCGGTTGGATATGTAGTAGAGCATTTGGGAGAGGAGCGGATACCAGGTATACGGAATGAGGTA TATGATTGGAATATGCAACATTTCGTCATTCTTTTCTATGCTTTTCTAATACCTAATTGCCTGGTCTATGTTTCTTGTCC ATGTTTTTCTAGCTATATCCTGTGAAATCATCATTCGGTGGACCGATTTCCTTTTCACTAGAACGAGCTGCAGCTCCTTT ATTTGGCATAAAGGTACGGGGGGAAATGCTTTGTGTACTTAATTACCAAATTTGCTTTCTAAATTTATCATATATACTGC AAATGCTTGAAATCACATATTCGGCTGCTACACTGTTAAGTTAACTCTGTCCTGGCCTTGTGACTGTTGAAAGTGGGATG CCATCAACTTTAGACTGCTAATTCTACTCTGCAAAAAGAACATTAAGCCACACTTAATTATATGGGTGAATTCCCCCTCA TTCCAAATAAAGTTCATATAATTTTTCAAGAATAACCGGACGCATTATTTATTGTCACATTGAAATTGGAAATTGAACTT ACACATTAGTTTTGTGGAATTCAATGTTGCCGATTTGCAATTTTAGTGTTGGCATCATTATGAATATTAATCAATGATTT GTCTTCAAACAGGTTTAGTATAAATGCACAGCACACTATTTGTTTTATAACAGGCTAGTTTATATATTCTAAAGCTCGTG TTGGTTATGCCTTTACCATCTTCAATTATTTTTTATTTTTTTTAATCTCTGTTCAAAGATTAGGCTTATGGAATCCACAT GTGTGGCTATGTTGAGCTGGATGGGCAGAAGCACCTATGGGTAGCAAAGAGAAGTCACATGAAGCCCACATATCCTGGGA TGCTTGATCATCTAGTTGCAGGAGGACTGGTCTGTAGTTTCATTTGTATCTGTTGCAAAGTGTTCAAACTTGTTCCTTGA CATAATTGTTAATTGTTCCCTTCAGTTCAACATGTAGTATTATCATTGAGTTGCTAAGTTGATTGTATTGTCACAGCCGC ACGGAATTGATTGTCGAGAAAATGTTGTGAAGGAATGTGAAGAGGAAGCAGGAATACCCAGAACCATCTCTATGAAGTAA GTTTACAACTGCTCCTTCCTCCTCCTCTAATGCATGAATTTTGATTTGTCTTCTGGGATGGTAAGCTAACTGAATTTCTT TTTCTGGGTATGCTCAAAATATTGATTAAGGTTGTGTTCTAGACCATTACTTTCCACCCATAACCAGAATGAAAAATCCA AATTAGTAGTACTATTTATTTGCCTGTCTAATGTCTGTTGATTTCTGTTCTCACAGAGCATTACCTGTTGGTGCTGTTTC ATATATGGACATTGATGGATATAGCTACAAGAGAGATGTTCTATTCTGCTATGATTTGAAACTTCCTGAAAGTTTTGTTC CAGAAAATGAAGGTAAGCCTTTTAAAAATGTTCTCCGAATTTACTGTGATTATGTTAACCTTGATCAGCCTTTTTAATAA CTGATGAAATAAAAATCAGATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTAAGCAAGTTGCAGAAGTCATACGCAC AACTCAGCTTTTCAAACCAAATTGCTCTCTCGTGATAATTGACTTCTTGTTTCGACATGGGTATTTCTTTCTCTATCTAC ATCTTTGCACATGTTTTTCCCCCTATTTGATGATATAGATAATTAAATGGAAGGAAGATTCAACAACCATTATACATTAG AATCATAACTGATGAGTATGTTTGAGAGTCTCAGCTATTGTCCCTTTCCTTACTCTTTTCCAAAACAAGAGGTAACCCTA TTCTCTCTATAATTCCCCTATATACTGATGTGGTAGTTGTAACTAACTTCTATGCCAGCTCCTTATGCTAGTAGGCCCTA TATAACAAACTAACTAACTGACTAACCAGCTACTGATTACAGTTAAGCTAGTTACTCTCCTAACTGCCTGTCTGCCCCTT CTTTGATACACCTTATTGATCGGTGGTCTCCAATCACGTAGCAATATAATTCATGGAGTCTGATGGAGAAGATGAATTGG ATCAAGGTTATAGGTTTATTTGGGATGTTAAATGAGGAAAGAGCCAATAATACCACCATGTGCTTGGAAGGGAAACTATA CAGGGTGTCGGCTATGGTGTTAACTGATAGTGGGTCAAACCACAATTACATTTCCCCTAATTTGGCTCAGCCATTGGTCT GTCTATTCAAGCTGCTCATAAACTAGGTGCACAAAAGGTCATGATGGCCCAAGGGAGGCGTGAGAGACTGGTTATTCAAT TTGGGGACTTCACTTTCAAATTCGAATGTTGACGCTTATGTGCTGGAGTTATAGGGGGAATGGATGTCAATTTTGCGCAG TAGCTAAAAACTTTGCGAAGGGTTGTGATGGACTCGAAAAGTTTGATAATGGAGTTTCAACAGGGTGGCAGGAAGGCGAT TTTTCAAGGGCAAGTGAGGGGAGTATCGAGTTATAGGTGTGCGGAAACAAGAAGGCCTGGTTAGGCACCATAAAAAGCGG GTTGGAGAAGGTTTCTCGAGAAATTAGCGGGTTGATGTGGACTGTCTCCTGTAATTCTATGGAGGTAGAGTGATAGAAAC TGTTTGAGACATAGCACACTCATGAAATCCTCTCCAGGTTCTGCACCTGTGGGGGTGAGAGAAGAGGAAAGTGACTACTG ATTAAAATCACTCTACAAGAGCTACAACAGCTCACTGGTAGTTGAGGGACCAGCGCTTTTCTCACAGTAACCTTGATTAT AGTCAAGATACCCCATTTAAGTTATTTTTTCTCCTATTAAACCCTCTCTTCATCTGATTACTGACTATCAGTTTTTAGAG AGTTAGTTAAAGAGGTAGTCATAAAGTTAGGAACTTACTGAGGGTGTGATCCCCTGCTGCCTCTCTATTCTTTCTCACAT ATTGTCTATCAATACCCCCTAAAAAGCCATCTTGTCTTGTCCATAAGGTGGAAACGAGGAAAGGCTTGTTGAATGCTGAT TGCTTGTTCCCACGATTTCTCCCAATCCAGCAAGTCTTGGCACTCGATCAGCACCTCTTAGTCTCCTGAAACATTAAGTC ATGAGCCCTCTACTGCTTCTGGATGCAGCTGAAGTTCATTATCATCTGATAACATCCTTGCCCACTTTTTCCGTATAATG TCGCATCCTTACATGGCCAAGGCGGTAGTGGCTGACCAATTTGTCAAGGAGGTTGTTAGGCTGCATGAGGTTCCTCAGAC CATAATCAATGACACAGATCTATTGTTCAGGGAACTTTTCCAATTGCAGGGACTGTTTTACATGAGATCTTCTTACCACT CGGTGATAGATGGTCATACTGAGATACTAAATAGGTGTTTGGAGACCTATTAATGTTGTTTAGCTTCTGAACAATTGGAT TTCTTGGGCAGAATTTCGGTAAGGCATCAGCTGGTTTTACATTCTTTCAGCTTGTCTATGGAAGAAAGGCTTCCACCTTG GTTAATTATTTTCAAAATGTAATAACTGTAGAAGTGGTGGCAAATGAATTAAGGTGTGTGAATGGGTATTCTCCACAGGC AGTAAACTGCATAGGAGAGAAAAATAAAATAGTGAAAAATATAGAGAAGTGTCCTACAAGCTTAAGTTGCCCATTCATTC AAGGATTCACCCAACAAATCTTAAAGCAAGTAGAAGAGAAAACCTGAATTAATATTAGCTGCCAGAACTACAATTAAAGC AGGAGTCTCTGTGCCACAATGTAATAAAACTAGAATTTAGGAAGACATTTATTGCAGTTACTCTATACAAAGTAACAAAA GTGAATTTGTTTTGCTCTTGATCTCTTAGTTCCAAAAGATTATTCTTTGGGTGCTCTACTGCAAATACTTAGTATCTGTT CTGATATTGCAGATACATCAGTCCTGAATATCATGGATATTTGGATCTTCTTCGAAGCTTAAGAACTGGAGATTGCTCCT GATATAGAAAGCATCATGACTATTTCCTGTATCAAGCATTCCTATGTTATTTAGTTTCTTGGTTATTGTCCGGCATAGTC CAATGGAAGGTTCAAAGGGCTTATTTTCATAGTGAGCCATAATAAGTTGTTAATTCAATTTATTTCTTTAATTGAGTGAT GAAAATTGATCTTATGGCAAACAAACCCGAACAGATCTATTCTAAACTATAGTCTGATCAGACCAGAAACCAAAGATCCA AAAATTTAAAATAAAAGTATATTAATTAATATAGTGCAAAAGAAAGCTAACAAAATCTAAAATAACAAAAAAAAATGCAT TGGAAGTAAGTATCAGCCTTGTTTTTCTACCCAAGACTAGGCATGAACCACAAACATCTTAAGTAGTCCTGTGAAGAGGG ATGGAGAGATAAAGGTTTCAAGCTCTTATCCTTTAGAGAGAAGATCCCAAGATCACGTTCGCGCGTGTACTTATTTAAAG TAGAGAAGAAAACACAATTGCCTCTGCTCAACTTTCCAGGAAGGTTAATTTCCTTAGCAGAAAGAACTTGAATTTCACTC TCATCTATCAACAAAACACGATCACCAAAGTCATCCTTTTGTCCGACAATAGGTACGGGAACCCATAACATGTTCAATAA GATGAAGAACTAACAACAACTCATCCCCATCTCTTGTCATACGTTTCTTCCATCGAGTTTAATACTGAACCCCATCCTTG AACTCAAAGCTAAGCTCCATTCGAATTGCATTTGGGTTCAGCATAACCAACCTTTCAGGTTTAATGATATTGGAATCTCT GAGATTAAAAACAGTCAGTCACAGAATCTAATTCATATGATGTCATAGCATATAGTTTCCAATCAAGAATTACAAAGTTA TCAAAAGTGGATCGATATTCATCTGTTGGAATTAGAGTCCATGACTTGTCCGCGACCTTGCATAAAGCTAACCGCTGCTC ACATAGATATATATAATCTGGATCGTTAAGGTGGACGGTATCACACGCCACCACAAAAAAGTCTGAGGATGTTGGTGCAA GGAGAACACGAGTTCCATAGAAATTCGAGAAGAATCCTTACGTGAAAAAGGTCGCAAAGGTGGGAGCTCAAACTCTTCAC CAGAAACTGGATTGGAAAACAGAAACAAATCACACTTTGGATTTTTGTGATAATAGTATTTTTGGAACACCATCCATCCT TCAACCGAATATACCCTACTAACGTAACCTTCTCAAGTTTCATGAGGTGCTGCAATGGTGTAAGAAGTGTCTTCTTGTGT GATGTCTAAAACAATGCCGGACTCAAGAGACGGAAGTAACATGAGGAATGGAAATTGAGGAGCAGGGGGACATGTTCCTT TGGTTGCGATAGCTTCATTAACTTTGCGTCGCCATGACCGACATACTCGTCGACACCTGAGGTAATCCACCAATGTTAAC TTCTGTAGAATCTCGTCAAATAGTTCCTGTTGGATATCTAACCAAGGGTTTCTCTCTTCTCCTTGCGCCATTGAATAGCA GCGTAGCACAATACAACTCTTGTTGGGGAATATAAACGTCTTTAAATGTTGATCATAAATTAAAAAAAAACATGATTAAA TATCTTAAAATTTATAAACCCTGCATATAATCTTTTAAATTCAAAATTATTATTATTATTATCATTATTTAATTCTAATT AATTTTTAAATGTAATAATTATAATTGTAATTTAGATTGCTATCCTATCTTTTAATACTGATCCCAGTTCTTATCCTTTT ATTTTAATTTTTGTCTGAATACCACTTATCATTGTATCATCGAATGATGTAACGACTTAAAATTTAAAATATTTCAAATT CCCCCAATCCTTTTTTCAAATCAATTTCTCATCTTTATCATTATTTCACTCCTGCTTCAATTTTTTTTTTTATCATTGTT ATTGACA
CDS sequence (LotjaGi2g1v0212300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTGTCAACATGCTGTCTGTTCAAGTTTGCTACCTTGTGCAGCAGCATCAGGTCACGACCCTTCTCCTCGCTCTC TTCTTCATCCACACCCTCTCACCCTTTTCCCTCCTGCTCCACCTTCTCACCAAAAGCTTCCATCAAGCACAATCTTGTTT CTTCATCATTCACATGGAACAATGTCTTTCGCATTTCTGAACCCGAAGCTTCCACTCAGGACCACTCTTGTCATCTCCAA GGCTACTTCAACAAAGTCCAACTCTGCAATCGTGGTTCTGACAAACAATCTGAATTCCTTCCATTTGTCATTGAGGGCCA AGTTGTTGGATTCATTCACAATGGGTTTGTTGAGCATTTGAGAGGCTTTGGCGATGTGTTCATTTTCCCCAATGATGGAA GCCCCCTTGGTAACTGTGTTTCATTGCATCCATTGCTGAAGACAGCTGAGGAAAGGACCAGCGCGGTTGGATATGTAGTA GAGCATTTGGGAGAGGAGCGGATACCAGGTATACGGAATGAGCTATATCCTGTGAAATCATCATTCGGTGGACCGATTTC CTTTTCACTAGAACGAGCTGCAGCTCCTTTATTTGGCATAAAGGCTTATGGAATCCACATGTGTGGCTATGTTGAGCTGG ATGGGCAGAAGCACCTATGGGTAGCAAAGAGAAGTCACATGAAGCCCACATATCCTGGGATGCTTGATCATCTAGTTGCA GGAGGACTGCCGCACGGAATTGATTGTCGAGAAAATGTTGTGAAGGAATGTGAAGAGGAAGCAGGAATACCCAGAACCAT CTCTATGAAAGCATTACCTGTTGGTGCTGTTTCATATATGGACATTGATGGATATAGCTACAAGAGAGATGTTCTATTCT GCTATGATTTGAAACTTCCTGAAAGTTTTGTTCCAGAAAATGAAGATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTT AAGCAAGTTGCAGAAGTCATACGCACAACTCAGCTTTTCAAACCAAATTGCTCTCTCGTGATAATTGACTTCTTGTTTCG ACATGGATACATCAGTCCTGAATATCATGGATATTTGGATCTTCTTCGAAGCTTAAGAACTGGAGATTGCTCCTGA
Protein sequence (LotjaGi2g1v0212300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVSTCCLFKFATLCSSIRSRPFSSLSSSSTPSHPFPSCSTFSPKASIKHNLVSSSFTWNNVFRISEPEASTQDHSCHLQ GYFNKVQLCNRGSDKQSEFLPFVIEGQVVGFIHNGFVEHLRGFGDVFIFPNDGSPLGNCVSLHPLLKTAEERTSAVGYVV EHLGEERIPGIRNELYPVKSSFGGPISFSLERAAAPLFGIKAYGIHMCGYVELDGQKHLWVAKRSHMKPTYPGMLDHLVA GGLPHGIDCRENVVKECEEEAGIPRTISMKALPVGAVSYMDIDGYSYKRDVLFCYDLKLPESFVPENEDGEVDSFKLIPV KQVAEVIRTTQLFKPNCSLVIIDFLFRHGYISPEYHGYLDLLRSLRTGDCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 371 | 351 | - | – | |
| PANTHER | 78 | 366 | 289 | 9.1E-116 | – | |
| PANTHER | 78 | 366 | 289 | 9.1E-116 | – | |
| Pfam | 83 | 202 | 120 | 9.6E-36 | ||
| Gene3D | 101 | 287 | 187 | 3.9E-96 | – | |
| CDD | 170 | 349 | 180 | 1.30324E-81 | – | |
| SUPERFAMILY | 188 | 350 | 163 | 6.72E-19 | ||
| Gene3D | 200 | 361 | 162 | 3.9E-96 | – | |
| ProSiteProfiles | 202 | 343 | 142 | 10.981 | ||
| Pfam | 213 | 323 | 111 | 3.6E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0212300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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