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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0217900 |
| Transcript ID | LotjaGi2g1v0217900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial; TrEMBL-Plants: tr|A0A151U1Y9|A0A151U1Y9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0217900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67255318..67260817) extracted from Lotus japonicus Gifu genome v1.2.
GCGAGCCACTCTGTGTTTCTTCATGTTTTGTCTTCGAGAGTTAAGACAGACAACTAACTACTCCGATTGAAGCAAGTGCC GGTTTAGGGTTTAACACACTGCACCGCCACCGCCACCGCCACCACTACCACCGCCACCACCAGACTCTCTCCTCTCTCCT TCACACGGCAGCGCCGGCGAATCACGCTCTCTTGCTGCCAACACTGTTTGTCCTGCGGCATCTCTTTCCTGTCGATCATC ACCATTCACAACTTGAATCTCTTGTCCTGATGTTGAAACCATTCAAATCCTCAATCCATGTGAGTAGAACTATGCTACTT CGCTTCAAAATCCCATCATTTCAACTATGCTCAACTGCATTTGGAAGAAAAAACATCAATGTTAACAATGACACTGAGAG TGACACAGAGTGGGAGAGGTTACTCAAACCTTTTGACCTCAAACAGCTTCAAAGGTCACTCTCCCCAATTAGCCCATTTC AGCTTTGTAAGCTGCTGAAGCTCCCTCTTGACATTCCAACATCAATGGAGTTTTTTCAAAGGGCTGGTGCCCAAATGGGA TATTCTCACACTTTTGATGTGTACTCAATTTTAATTGATAAGCTTGGTGCTGTTGGGGAGTTCAAAGTTATAGAAAGTTT GTTGAAGCAAATGAAAGAGGAAGGGATTGTGTTTCATGAATCATTGTTTCTTTTGATCATGAAGCATTATGGGAAGGCTG GTTTGCCTGGCCAAGCTCCTAGGCTTTTGTTGGATATGAGGAGTGTTTATTCGTGTGAGCCGACGTTTAAGTCGTACAAT GTTGTGTTGGAAATTCTGGTTGCTGGAGGTTGTCCTAAGTATGCTCCTAATGTTTTCTATGACATGTTGAGTAGAGGTGT TTCTCCAACTGTGTTTACATTTGGGGTGGTCATGAAGGCGTTGTGCATGGTTAATGAGGTTGATTCGGCTTGCTCGCTTC TGAGGGACATGACGAAACATGGGTGTGTTCCGAATTCGGTCATTTACCAAACCCTGATTCATGCTCTCTCTGTAAACAAC AGAGTGAGTGAAGCAGTGAAACTGTTGGAGGAAATGTTTCTGATGCGTTGTGAACCTGATGTTGAGACCTTCAATGATGT TATCCATGGCCTATGCAGGGCCGGTCGGATGCAGGAGGCGGTTAAGGTGCTTAATCGAATGCTTCGTGGAGGTTTCAAGG GTGACGCTTTAACTTACGGATTTTTAATGCATGGCTTGTGCAGAATGGGTAAAGTTGATGAAGCAACGGACTTGCTAAAC CAAATACCCAATCTGAACACTACACTTTATAATACACTGATTAATGGTTATGTCTCTAGTGGGCGGTTTGAAGAAGCAAA AGATCTTTTATATAATAGCATGATAGTTGCTGGATATGAGCCTGATGCCTTCACATTTAACATAATGATCGATGGACTTT GCAAGAAGGGGAATTTGGCCTCTGCTCTTGAATTCCTAAATGAGATAATAATGAAAGGTTTTGATCCCAATGTGATCACA TACACCATTTTGATAAATGGTTTCTGCAAGCAAGGCAGGTTAGAGGAAGCTACGGAGGTTGTGAATAGCATGTCAGCCAA GGGTCTCAGTTTGAATACAGTGGGTTACAATTGCTTGATTAGTGCGCTGTGCAAAAGTGGGAAGATTCAAGATGCTAGAC AAATGTATCGTGAAATGCCAAACAAAGGATGTAAACCTGACATTTATACATTTAATTCTTTAATAGATGGACTATGCAAG AATAATAAGATCGAAGAAGCCTTGGAATTGTATCATGATATGTTCTTGGAGGGTGTTATTGCCAACACTGTAACATATAA CACATTGATCCATGCATTTATTGGGAGAGATTTAATTCAAGAAGCATTTAAGCTTGTTGATGAAATGTCATTTAGAGGGT GTCCTCTTGACAAAATTACGTATAACGGCCTTATAAAAGCGCTCTGCAAAACTGGGGCCGTAGAAAAAGGATTGGGGTTG TTTGAAGAAATGCTCGGGAAAGGGGTTATCCCGCATATCAGCTCTTGCAATATGCTGATCAATACCTTCTGTAGGATTGG AAAAGTAAATGATGCTCTTCAATTTCTTCGTGATATGATTCGTGGTGGTCTTACACCAGATATAGTCACTTATAACTGCC TGATAAATGGTCTTTGCAAGATGGGTCGTGTTCAGGATGCTTTAAACCTTTTTAGCAGGTTACCAGCTGAAGGACTTCAT CCTGATGCTTTCACATATAACACACTAATCAGTAGTCACTGCTATGAGGGTTTGTTTAATGAGGCATGTCTGCTTTTATA TAAAGGTGTGGATAGCGGGTTCATACCTAATGAAATCACTTGGTCAATATTGTTAAATTATTTTCAAAAAGAAAATGTCA AGCGAAGTTAGTCTTTCTTCTATGGTTGATATGGAGTCAAACTGATCTGTTACATCATTCGAACAGCGCTAGCTACCACA GGTTTGTCTCAATCTTTTTCCTTACTCTTGCTCAAATGCTTCCTGATTCTATTCTCTATCGAACATAATATTCTACGTTG ATAACCCAAAATACCAATATATTGGTTTCATCATTGAATAATTTGAACTGAATATCTTCTATATAAGTTGAACTGATGAA CTTGTTTATGCTTCCTTTTGTGAGTGTCCTAATACCTGTGAATTTATGGTTTTCATTCTTTTGTCGTGTATTTTGAAATG ATTTTAGTTGGTCGTGAGTTTTTAAGGCTGATTATAGTCTATTTTAAGGTGCGTTGCTTATCCTTTGCATAGATGATTTG TTATGCTTTAGTTATGTATGTATATGGATTATGGACATGTTATGGTTTAGTTATGCATGGTTTTAGTTATTTGAGGGCTG GGCTTATCGGAGGCAGAAATTCGAGACTAGGGGGGGGGGGGGGCAAGAACAAAGAAAATGAAATGCCTACAGTAATTTCT ACAGCTCACATACATATGTATAACATGTAAATTGGGCATGGCAGGGCATGCCCCCTTCCTCCACCCCTGCTTAGAGTAGA AACCATGTTTTGTTTGTATTAAGTTCTCTGTTATGTTATAATAAACTGTCATGGGACCTGATAAACAGGTATTATCTTAT TAGCCTTCTTTTCTAACAAAATGATCAGTAATTGTAGATCCAGTATGGACCATGGTTGCATGATCAAAATCTATTGAAAT GAGTAATAAGATATAATTGTAACCATTCTCCTGTTCTTTATATCAGGAATGAAAAGAATCAATTACTCTTGAACATTCGA CGAGTAAATCGTCCGTAGACTATTATGCCATCATCGGTTCTGTCAAGTGATAGCATATACATTGGCCTTCTTGCTGCTGC AGCTCATGCAGCTGCGACAAATAGTCCGTTTACCATATTCTCTAATCCTAGGTTGGTAACTGTAGTTGGATGGTCTGCAT TATCACACTGCAAATTATGCTGAACTCTCTCTCTCTCTCTCTCTCTCCAGGGCAAGCCCATCGGAATTTGTCACCTCTTT GGCCAAGTCCGTTAAAGCCGTGTATCATTCATGACTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAAACAGAAGAAT CAAGTGTCCGGCTGTTGGTATAGTTACCTTAAATATCCTCCCCCCTCCCAATCACTATATCAGTCCCTAACCCTTCTCAA AGAAGAAAAATTAGCTCAGGGAAGCTTTATTTGACTTAGGAAGGTAATTGAGTTTGCTAAATTACTTCTCAGGTTCTTAA GCTTATTGGAAGAATAAAAAGGGGCGCTAAAGGTTCAAGGGCCCAAATTTTCTTTTTGAAACTATGGGGACCTAACCCAG TGACAAATTTAAACTATAGGGGCATATCTGAATTTTCTTAACAATTACTGGCACCTATAGAGTTATTTGACCTTTAATTT TACTTTCTGAGTGTTATTTATTTTAATTTTGGATACTTTTTGGTGTGGTGATAACCTCAATACTTTGGTTTGTGTGTTTT GCATTGTATCAACGAAGAAAGAAACTGTGCTCTACTCACCGATTACTGCAGTTACCAATCATAATTGCACACAACTGCAC TTAGTTCTGTCACATGTTTAACCGGAAAACTCTTCATCATTAGCATTCCTCCATTTTGGTTCTCAAATCTTAGGCCGCGT ATTGATCAGTTTCTAAGCATGGTTATTATATTAAAAGTTTTCTGTGTACCATTTCATATCATTTTGTTGTGCATGTTTGC TTACCAACTGAATATGACACTTGATGCATTACTTTATTTATGTCCTTCCAAAAGCTGAAGGTTTTTATGAATGATTAGCA ACACATTATTTGCTTATGTCCTTCATAAAGCTTGTGTTTTGTGAGGTTTTTCATGTATTGATGCATCTACTCACTGTAAC ATGTTCTTGTCCAGATACATGGGGTGCTATAACCGGTATTAGTGAGTTAGATTCGGTCCGCTGGCCAAACTCACACTGCC GTTCTGTGAAGGTTTGTGAAGACTAGTTGATTCATCCAACACCTAAAAACCTTTGCCATGATAAAATTTAGCACAATTAT AAAAATGTCAGGGATTGTTTTTAAACTTAGTGTAGAATTTTGGTTCTTGATCTTTGTCAACTGATGTAGGTTGGCTTGGA TGAGTCCACTGCAAGGGAGAGGCAGCCGAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTACCAATGTATCCAT CTCCATTCTCCTTGAGGTTGAGGCGCCCTTGGCCTTCTGGACCTTCTTTATATGGTATATGGTGGTTTTGTTAATAAAAT GTGTCATGGCATTCTCTGGGATCATTTTGACCATATACTGTTCTATTTTGCGCTGTATGGTACATGATATCTTCACCTGT GCCTTTCATTTATTTGTGTAATCAGGTCTCAAGGATGGTGACATGAGTATTGGTGGTTCTCGATTCTTGTGGCTCCAAGG TGGTCTTTCGTATCAAGGAAGGAAATTTAGATCTCACTGATTCTTGATTCTGTGAAGAAACACTCAACACTTTACTTTTT TGCAGGGAGTTTGTGAACAGTGTCATTCTCATACATCAGGATACTATCTCCACTAGAAGTGCAAGAAATGCGCAGAAGTG TTGCTACTTCTACTTCTTCTCCAAGTCACAAACTTTCTAATGACGGCAACTCTTGCGATAATTATGTGAGTCCACAAGAG TTTGACGGCAACTTTCTAATGGCATGGCACCAATGGGTTCTTTTCATTACTAGGAAGTAGGAATTTCTGCTTCTAAGTAG TTTTAGTTGGAAAATTGTGGTGGCAGAATCTTTTACATTTATGTATGGATTGGTCCAACATTCTTGTACACATAATCACA TATTAATGGTTTGACATGTACTGATTCTGCAAAGTCTAAATAGATCAACAGCAAATGACTTTAAACTATAAGTAGGCCAC TTTGTTTTTGTAATGCTTTGTTGCTTATAGCAGTTATTAATTATTGTCTAGCTTTGAGTT
CDS sequence (LotjaGi2g1v0217900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAAACCATTCAAATCCTCAATCCATGTGAGTAGAACTATGCTACTTCGCTTCAAAATCCCATCATTTCAACTATG CTCAACTGCATTTGGAAGAAAAAACATCAATGTTAACAATGACACTGAGAGTGACACAGAGTGGGAGAGGTTACTCAAAC CTTTTGACCTCAAACAGCTTCAAAGGTCACTCTCCCCAATTAGCCCATTTCAGCTTTGTAAGCTGCTGAAGCTCCCTCTT GACATTCCAACATCAATGGAGTTTTTTCAAAGGGCTGGTGCCCAAATGGGATATTCTCACACTTTTGATGTGTACTCAAT TTTAATTGATAAGCTTGGTGCTGTTGGGGAGTTCAAAGTTATAGAAAGTTTGTTGAAGCAAATGAAAGAGGAAGGGATTG TGTTTCATGAATCATTGTTTCTTTTGATCATGAAGCATTATGGGAAGGCTGGTTTGCCTGGCCAAGCTCCTAGGCTTTTG TTGGATATGAGGAGTGTTTATTCGTGTGAGCCGACGTTTAAGTCGTACAATGTTGTGTTGGAAATTCTGGTTGCTGGAGG TTGTCCTAAGTATGCTCCTAATGTTTTCTATGACATGTTGAGTAGAGGTGTTTCTCCAACTGTGTTTACATTTGGGGTGG TCATGAAGGCGTTGTGCATGGTTAATGAGGTTGATTCGGCTTGCTCGCTTCTGAGGGACATGACGAAACATGGGTGTGTT CCGAATTCGGTCATTTACCAAACCCTGATTCATGCTCTCTCTGTAAACAACAGAGTGAGTGAAGCAGTGAAACTGTTGGA GGAAATGTTTCTGATGCGTTGTGAACCTGATGTTGAGACCTTCAATGATGTTATCCATGGCCTATGCAGGGCCGGTCGGA TGCAGGAGGCGGTTAAGGTGCTTAATCGAATGCTTCGTGGAGGTTTCAAGGGTGACGCTTTAACTTACGGATTTTTAATG CATGGCTTGTGCAGAATGGGTAAAGTTGATGAAGCAACGGACTTGCTAAACCAAATACCCAATCTGAACACTACACTTTA TAATACACTGATTAATGGTTATGTCTCTAGTGGGCGGTTTGAAGAAGCAAAAGATCTTTTATATAATAGCATGATAGTTG CTGGATATGAGCCTGATGCCTTCACATTTAACATAATGATCGATGGACTTTGCAAGAAGGGGAATTTGGCCTCTGCTCTT GAATTCCTAAATGAGATAATAATGAAAGGTTTTGATCCCAATGTGATCACATACACCATTTTGATAAATGGTTTCTGCAA GCAAGGCAGGTTAGAGGAAGCTACGGAGGTTGTGAATAGCATGTCAGCCAAGGGTCTCAGTTTGAATACAGTGGGTTACA ATTGCTTGATTAGTGCGCTGTGCAAAAGTGGGAAGATTCAAGATGCTAGACAAATGTATCGTGAAATGCCAAACAAAGGA TGTAAACCTGACATTTATACATTTAATTCTTTAATAGATGGACTATGCAAGAATAATAAGATCGAAGAAGCCTTGGAATT GTATCATGATATGTTCTTGGAGGGTGTTATTGCCAACACTGTAACATATAACACATTGATCCATGCATTTATTGGGAGAG ATTTAATTCAAGAAGCATTTAAGCTTGTTGATGAAATGTCATTTAGAGGGTGTCCTCTTGACAAAATTACGTATAACGGC CTTATAAAAGCGCTCTGCAAAACTGGGGCCGTAGAAAAAGGATTGGGGTTGTTTGAAGAAATGCTCGGGAAAGGGGTTAT CCCGCATATCAGCTCTTGCAATATGCTGATCAATACCTTCTGTAGGATTGGAAAAGTAAATGATGCTCTTCAATTTCTTC GTGATATGATTCGTGGTGGTCTTACACCAGATATAGTCACTTATAACTGCCTGATAAATGGTCTTTGCAAGATGGGTCGT GTTCAGGATGCTTTAAACCTTTTTAGCAGGTTACCAGCTGAAGGACTTCATCCTGATGCTTTCACATATAACACACTAAT CAGTAGTCACTGCTATGAGGGTTTGTTTAATGAGGCATGTCTGCTTTTATATAAAGGTGTGGATAGCGGGTTCATACCTA ATGAAATCACTTGGTCAATATTGTTAAATTATTTTCAAAAAGAAAATGTCAAGCGAAGTTAG
Protein sequence (LotjaGi2g1v0217900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKPFKSSIHVSRTMLLRFKIPSFQLCSTAFGRKNINVNNDTESDTEWERLLKPFDLKQLQRSLSPISPFQLCKLLKLPL DIPTSMEFFQRAGAQMGYSHTFDVYSILIDKLGAVGEFKVIESLLKQMKEEGIVFHESLFLLIMKHYGKAGLPGQAPRLL LDMRSVYSCEPTFKSYNVVLEILVAGGCPKYAPNVFYDMLSRGVSPTVFTFGVVMKALCMVNEVDSACSLLRDMTKHGCV PNSVIYQTLIHALSVNNRVSEAVKLLEEMFLMRCEPDVETFNDVIHGLCRAGRMQEAVKVLNRMLRGGFKGDALTYGFLM HGLCRMGKVDEATDLLNQIPNLNTTLYNTLINGYVSSGRFEEAKDLLYNSMIVAGYEPDAFTFNIMIDGLCKKGNLASAL EFLNEIIMKGFDPNVITYTILINGFCKQGRLEEATEVVNSMSAKGLSLNTVGYNCLISALCKSGKIQDARQMYREMPNKG CKPDIYTFNSLIDGLCKNNKIEEALELYHDMFLEGVIANTVTYNTLIHAFIGRDLIQEAFKLVDEMSFRGCPLDKITYNG LIKALCKTGAVEKGLGLFEEMLGKGVIPHISSCNMLINTFCRIGKVNDALQFLRDMIRGGLTPDIVTYNCLINGLCKMGR VQDALNLFSRLPAEGLHPDAFTYNTLISSHCYEGLFNEACLLLYKGVDSGFIPNEITWSILLNYFQKENVKRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 37 | 200 | 164 | 1.8E-12 | ||
| PANTHER | 100 | 340 | 241 | 7.7E-184 | – | |
| PANTHER | 100 | 340 | 241 | 7.7E-184 | – | |
| ProSiteProfiles | 101 | 135 | 35 | 8.254 | ||
| TIGRFAM | 104 | 134 | 31 | 8.6E-4 | ||
| Pfam | 104 | 133 | 30 | 0.025 | ||
| ProSiteProfiles | 136 | 166 | 31 | 5.514 | ||
| ProSiteProfiles | 172 | 206 | 35 | 8.681 | ||
| TIGRFAM | 175 | 208 | 34 | 9.2E-4 | ||
| Pfam | 175 | 219 | 45 | 2.8E-7 | ||
| Gene3D | 201 | 270 | 70 | 1.3E-18 | ||
| ProSiteProfiles | 207 | 241 | 35 | 10.622 | ||
| TIGRFAM | 209 | 243 | 35 | 5.0E-7 | ||
| Pfam | 238 | 269 | 32 | 1.5E-8 | ||
| ProSiteProfiles | 242 | 276 | 35 | 10.468 | ||
| TIGRFAM | 244 | 278 | 35 | 3.7E-6 | ||
| PANTHER | 258 | 424 | 167 | 7.7E-184 | – | |
| PANTHER | 258 | 424 | 167 | 7.7E-184 | – | |
| Gene3D | 271 | 342 | 72 | 2.2E-21 | ||
| Pfam | 276 | 325 | 50 | 2.3E-13 | ||
| ProSiteProfiles | 277 | 311 | 35 | 12.452 | ||
| TIGRFAM | 280 | 312 | 33 | 3.9E-8 | ||
| SUPERFAMILY | 291 | 509 | 219 | 1.26E-7 | – | |
| ProSiteProfiles | 312 | 342 | 31 | 9.317 | ||
| TIGRFAM | 315 | 339 | 25 | 0.0011 | ||
| ProSiteProfiles | 343 | 378 | 36 | 12.288 | ||
| Gene3D | 343 | 478 | 136 | 1.6E-40 | ||
| TIGRFAM | 346 | 380 | 35 | 1.8E-8 | ||
| Pfam | 346 | 367 | 22 | 4.7E-5 | ||
| PANTHER | 369 | 530 | 162 | 7.7E-184 | – | |
| PANTHER | 369 | 530 | 162 | 7.7E-184 | – | |
| Pfam | 378 | 427 | 50 | 2.8E-17 | ||
| ProSiteProfiles | 379 | 413 | 35 | 12.627 | ||
| TIGRFAM | 381 | 415 | 35 | 5.3E-8 | ||
| ProSiteProfiles | 414 | 448 | 35 | 12.759 | ||
| TIGRFAM | 416 | 449 | 34 | 8.1E-10 | ||
| PANTHER | 420 | 589 | 170 | 7.7E-184 | – | |
| PANTHER | 420 | 589 | 170 | 7.7E-184 | – | |
| ProSiteProfiles | 449 | 483 | 35 | 14.074 | ||
| Pfam | 449 | 497 | 49 | 8.2E-20 | ||
| TIGRFAM | 453 | 485 | 33 | 4.3E-11 | ||
| Gene3D | 479 | 569 | 91 | 2.4E-30 | ||
| ProSiteProfiles | 484 | 518 | 35 | 12.649 | ||
| TIGRFAM | 486 | 519 | 34 | 2.9E-9 | ||
| Pfam | 519 | 567 | 49 | 1.0E-16 | ||
| ProSiteProfiles | 519 | 553 | 35 | 10.874 | ||
| TIGRFAM | 521 | 554 | 34 | 1.4E-6 | ||
| PANTHER | 536 | 705 | 170 | 7.7E-184 | – | |
| PANTHER | 536 | 705 | 170 | 7.7E-184 | – | |
| ProSiteProfiles | 554 | 588 | 35 | 13.121 | ||
| TIGRFAM | 556 | 588 | 33 | 3.2E-7 | ||
| Gene3D | 570 | 713 | 144 | 2.5E-39 | ||
| Pfam | 584 | 616 | 33 | 1.4E-7 | ||
| ProSiteProfiles | 589 | 623 | 35 | 11.652 | ||
| TIGRFAM | 592 | 625 | 34 | 9.9E-8 | ||
| Pfam | 623 | 671 | 49 | 4.1E-16 | ||
| ProSiteProfiles | 624 | 658 | 35 | 13.603 | ||
| TIGRFAM | 626 | 660 | 35 | 1.7E-9 | ||
| ProSiteProfiles | 659 | 693 | 35 | 10.293 | ||
| TIGRFAM | 661 | 695 | 35 | 2.3E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0217900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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