Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0219200.1

Overview

Field Value
Gene ID LotjaGi2g1v0219200
Transcript ID LotjaGi2g1v0219200.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Rac-like GTP binding protein; TAIR: AT4G28950.1 RHO-related protein from plants 9; Swiss-Prot: sp|O82480|RAC7_ARATH Rac-like GTP-binding protein ARAC7; TrEMBL-Plants: tr|I3SR86|I3SR86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0219200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:67440293..67445156) extracted from Lotus japonicus Gifu genome v1.2.

CTGGGGCTGGTCATGCCTCAAATATAGGTACCGTTTGAGAGAGGGACCCCTTTGTGTAATTCAAAAAATTTGCTGTTGGA TTTGAAATTTATTGAGTGGGATGAAAAAGTGCAGCAACAACAACATTTGACCACATGCATTGCAGTGTCTCTCTCTCCCT CTCACCAATTTTTTTATTCCTTGAAAATTGGTCAAGGTCCTATTATCTATTTATCTCACACCCTTTAATGCAACCCAGAG ATCAGAATCCAGACCCTCTTTCTCCATTTCCTTCTTCTTCACATTTTCTTTGAGCTTATAAAATCCAACTTTTGAGGTCT TTCTATATTTAGAACAGGTGTTAGTGTCTGTAGCTGCTTAATCTTAGTTATGATGAGTGCTTCAAAGTTCATTAAATGTG TCACTGTTGGGGATGGAGCTGTTGGGAAAACCTGCATGCTCATTTGCTACACCAGCAACAAGTTCCCCACTGTATGTTTC TTTATCCATTAATTTTCCTTGTTTAATTTTCTTCCCATTTTTGGATTTTTCATTTGAATGGTGCTTTTCCTACACATATA GACACCATATAAACAAGATAAAGTTTTGGGTTTTTTTCTATATTGGGACATTTATTGCAATGTGCTGAGATGCTTCATTA TCTGTGTTCTGGGTTTTGTGTTTCTGATGCATGGATGATGTATGCTCACTCCTTTTCCTGTTTTTCTTTTTTCCTTTTTG GATTGCAGGATTACATACCCACAGTATTTGATAACTTTAGTGCTAATGTAGCTGTGGATGGAAGCATTGTCAATTTGGGG CTTTGGGACACAGCAGGTACTAGGAGCTCCCCCCACTTGAGTTTTTATGGTCCAGTACTAAGTTTTGGTTCTCTAATTTT GATACTTTTTTGGTCCAATTGTTTTAAAGGCCAGGAAGACTATAGTAGGTTGAGGCCACTGAGCTACAGGGGAGCAGACA TATTTGTGTTGGCATTCTCATTGATTAGCAGAGCTAGCTATGAAAATGTTCTCAAGAAGGTTCATGCCTATCTCTGCTTC CTCATATCTTACTTTTTCTCTCTTGTTTCTATTTTTGGATTTTGGATTAAAGTTTTCAAAGTGTGTCTTTTTCTTCAAGA CTTCCTTTGAATGTATGAGTAAATTGAGAGGAAAGGAAAATAGTTAATAGAAAACATAGAACAAAGTTCATAGTGAAAAA CATTTTCTATGGTACTACAGAAGACTTAAATGAAAGAAAATAGTTTAACTATGCCCTTGTTTCAAATAGCTTTGAAATTG TTGATTAACATATTGTCAAGCATTTTGTTTTAATGTTGAGAGAAGGAAATTTAGTTTTCAAAATGTTAAAGAGTGACTCT TTTAAACCGTTTAGAACAACAGCTTCAAGCCAACAACAAATAAATTGACAGGCACGATATTCAAATACAGGATCACTAAG CAGAGAAATCAAGTTGAATAATGAATATTTGATTTAAAAGAGCTTCAATGATCACTGGTTAATTTTATATAATCTTGGTC TTTTGTTGATTTTTGTCACCTTCTTTGACTTTTCATTTTTGCCTATTGATGGCTACTTATAGACAGGGATAGAAAATTCA ACAGAGAGAGGGGGGAAGGGAATATACTGGTTCAATCTGATCCAAAAATAAAACTTAAAATAATGTTAACTGTTGAGTGA GTACAGTATCAGATAATTATAGTTCAAAAACATTGATGGTGTGTCATGATGCTTATAATATTTTCAAGCAGTGCTTATAA AACTAGCTGCACTAAATCAAACAACTCATTTTGGGAAAAGGTATCACTGTAACTTAATTGCTAAACTGTTATTTTACATT TCCGTATCTACTAACATTATTATTTAGGCTTAATTCCATTTTGAGCCCCTGATCTTTCAAAAATAAGCGATCGGGGCCCC CCGTGTTTAAACGTAGCGGTCAGGCACCCCAGTGTTTAAAAAACGTGCGTTCCAAGCCCTTCTGTTAAGTACCGTTTGTT TGACCAAACGGAGCCAGTGACGTGGCGTTTTTTTTTCATTCTTAATTCCACTTTGAGCCCCTGATCTTTAAAAAATGAGC GATCGCCCCCCTCCCCCCCGGTGACTTGACCAAAATGAGCGATGACCAAACGGAGCCACTTTGGGCCCCTGATCTTTAAA CGTAGCGGTCAGGCACCCCAACGTTTCAAAAACGTGCGTTCCAAGCCCTTTTGTTAAGTGACGTCACTGACTCCGTTTGG TCAAACAAACGACACTTTACAGAAGGGCTTGGAACGCACGTTTTTGAGACGTTGGGGTGCCTGACCGCTACGTTTAAACA CGGGGGCCCCGATCACTCATTTTTAAAAGATCAGGGGCCCAAAGTGGAATTAAGCCAAGCCTATTATTTATGTAGCAGAA AATTGTTTTCTATGATATTTTACTAGTAATTTATGTGAATAATTTTTAACAACTAATATTGATAATAATTGTGTTAGGAT GTAAGGGAAGGGGAAACTAGTTAGGGGCTTAGAGGTTGTTAAAGTAGTTAGTAGCAGAAGGTGAAGCTATATAAATAGAT AGAATCAGAATAGGAGGATTATTATCATTGTTGGTTTGTGATTAAAAGGAGAAATCCTCTGGGAAAGGGAACCCATTGGG GAGAATTCATCCTCCATGTATGTGTTCAATTTTCAGTAACACAATTCCTCTTTTTCAGTTCTGCCAGTCAATCTTTGTCT TCACTTTCTGGGTTACTATCAAGTTGATTTAAAAAAAAGGTCATAACGAGGGTGTTTATGTGTTTATAACATAAAATTCT CTCTCATTACTATAAAGAAAATCACTTACATCATTTTTTTCTTTCTTTTCATCCAAACATGAAGGAAGGAAACAGAATCG TACTTATTTTATTGTTTTCATTTTCACTTCAAATGCAAACTAAGCTTAAGTCTGTAACTTTTTTGTTCTGCATACAGGGA ATATGTGCATGTTTTCATTGTGTTTGGCGTAAGCAATGATGAACCATCTTCAACATAGCATTCATGTCCACTTAATGTTG TTTATTTAACATATAGTGCAGTTACTCATCTTTTTTCTTTATATTCTTTTTCAGTGGATGCCAGAATTGCGTAGATTTGC ACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGGTAAGCAGCTGCACCTATGAAATTTTGTACACTATTTTCTAT GCTGGTTTTCTAACTGAGGAAATAAGTGAATGACACAATGCATTGAATTGTTGATTCTAGATCTTCGTGAAGATCGGGGA TATTTTGCTGATCACATGGGATCTAATGTTATAACATCTGCTGAGGTATGAATACTTTAGATTAGCTTTTCTGTAATATG TATTAATGAAGCCCTTTATGTATTAAGTATAGAAAACTTCTCATTCACTAATCTTAGCACATTACTTACAGGGGGAAGAA CTAAGGAAACAAATAGGTGCAGCTGCTTACATTGAGTGCAGCTCGAAGACTCAACAGGTAGTGGGTTTAAATTTCATTTT GAATCCATAGAGGTCAGCTCTTGTATGATGTAATGTACTTTGGTTTATCTGTAGAGAATCTTATGATGAAGATATATTTT CATTTTTAGAATGTCAAAGCAGTTTTTGATACTGCAATTAAGGTTGTCCTTCAACCTCCAAGGAGGAAAGAAATGGCTAG TAAGAAAAGGCATAGAAGGTCTGGCTGCTCATTTGTGTAAGTACCTCTTACTTCTATTGAGTTTCAATCATTCTAATGAT TTATCTTAGCATTTGATGGATGATGTTTTCATATCTATTCATAGTTCAAGTTAAGGATTTGATGATAGAATAGTGTATGT ATACTTTTCTTGGAGACTTCCCTAATGAATAAGGAGATTGAATTGCTAGGCAATGTGAATATTGCAGCTTATGCCTAGGT ATATGATGATTGGACTTAGTAGATATAGTTATTATGGAAAAACAAAAACTCTGTACATTTGTCATGATGCTGAAACATCT TTGAATGGAGATTAAGACGAATTTGGATTCATTGTAGTCAAGGAAATCCTAAACTCACACAGCCAAGAAATTTTAGTCAT TCATTCGAAATCATACGAGATTTCAAGTTTATCTAAGCTTATCCGATTTTAATGAAACCTATGAGTCGTCCAATCTTGAT GGAACGGCCAAAATTACTTGAATGTGTAAATTTAGGATTGTCCTCATGACTGCAGAAAATCTGAATCTGATTAGGACCAT TTCATCTGAAAATTTCATGTCTGAGTTGAAATTGAGACTCAGGTTGCAATGTGTTAATTTTCTTAACCCCTACATCAGTT CAAACCACCCTGTGATTTAATAGCTGAAGCATACATTTTTTCTTTGCAAATGAGAATTATGATTATTTGTGCTGAAATTT TATCATACACCAACATTGGACTCTATGTTAACTTGGTTTCTTTACTGACTAACAGAGGTATTGTTTGTGGAGGCTGTGCT GCTTAATGGTTTCACACATCAGTTGCACCATCACCTGCTTTTGATATGGATGCTATTTTGCAAAAGCTTCAAGGTCAAGT GTGGATTCATGGAAACTAATTTTACATATTTAAATGTATCTTTATTCTTGTATTGTAAGATAGTATATTAAGCTGGTTTC AGACTTTCAGTTCACAGACCCTATTAGACACTGGAGGGAATTTTTCATTCTCTCACATGTTACTGAGGGATATTGTGTTT ATATAGTTACCAATTTATTAAGCCAAGAGAACCGTCACCTTTTAACTTGAAATGCTTCTTTACCTCTAGCCTATATAATA TGGATTTAAATGTGGCCATTACTTATTGCAGAATGGCGGATACAGCATAAAGTGTGACTCACAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0219200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGAGTGCTTCAAAGTTCATTAAATGTGTCACTGTTGGGGATGGAGCTGTTGGGAAAACCTGCATGCTCATTTGCTA CACCAGCAACAAGTTCCCCACTGATTACATACCCACAGTATTTGATAACTTTAGTGCTAATGTAGCTGTGGATGGAAGCA TTGTCAATTTGGGGCTTTGGGACACAGCAGGCCAGGAAGACTATAGTAGGTTGAGGCCACTGAGCTACAGGGGAGCAGAC ATATTTGTGTTGGCATTCTCATTGATTAGCAGAGCTAGCTATGAAAATGTTCTCAAGAAGTGGATGCCAGAATTGCGTAG ATTTGCACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGATCTTCGTGAAGATCGGGGATATTTTGCTGATCACA TGGGATCTAATGTTATAACATCTGCTGAGGGGGAAGAACTAAGGAAACAAATAGGTGCAGCTGCTTACATTGAGTGCAGC TCGAAGACTCAACAGAATGTCAAAGCAGTTTTTGATACTGCAATTAAGGTTGTCCTTCAACCTCCAAGGAGGAAAGAAAT GGCTAGTAAGAAAAGGCATAGAAGGTCTGGCTGCTCATTTGTAGGTATTGTTTGTGGAGGCTGTGCTGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0219200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGAD IFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYFADHMGSNVITSAEGEELRKQIGAAAYIECS SKTQQNVKAVFDTAIKVVLQPPRRKEMASKKRHRRSGCSFVGIVCGGCAA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51420
1 178 178 24.677
IPR003578
PANTHER
PTHR24072
2 204 203 1.4E-132 –
PANTHER
PTHR24072:SF127
2 204 203 1.4E-132 –
Gene3D
G3DSA:3.40.50.300
4 184 181 2.3E-64 –
SMART
SM00173
5 181 177 1.8E-22 –
SUPERFAMILY
SSF52540
6 179 174 9.22E-54
IPR027417
TIGRFAM
TIGR00231
6 173 168 3.1E-31
IPR005225
CDD
cd04133
7 179 173 1.49121E-133 –
PRINTS
PR00449
8 29 22 2.3E-37 –
SMART
SM00175
8 181 174 1.8E-24 –
Pfam
PF00071
9 179 171 1.1E-52
IPR001806
SMART
SM00174
10 181 172 1.8E-109 –
PRINTS
PR00449
31 47 17 2.3E-37 –
PRINTS
PR00449
48 70 23 2.3E-37 –
PRINTS
PR00449
110 123 14 2.3E-37 –
PRINTS
PR00449
156 178 23 2.3E-37 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0007264
Biological process Small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0219200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…