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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0223200 |
Transcript ID | LotjaGi2g1v0223200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P29024|CHIA_PHAAN Acidic endochitinase; TrEMBL-Plants: tr|I1N156|I1N156_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0223200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67928940..67929845) extracted from Lotus japonicus Gifu genome v1.2.
TTAGCAATGGTGTTGAGGTCACGAATCTCAATCTTATTCTTCTCCTTAACACTGTTAGTAGCAGTAGCAACCGGTTCTAA TAATGCTGGCAAAATTGTAACCTACTGGGGCCAGAATGGTTATGAGGGCACCCTGGCAGAGGCTTGTGCCACAGGGAACT ATGAATATGTGATCATAGCCTTCCTGCCAACATTTGTCACTGGCCAGACTCCCATGATTAATCTAGCTGGTCATTGTGAC CCACATGTTAATAATGGGTGCATTGGCGTAAGCTCTGACATTGAGTCGTGCCAAGCCAAAGGCATCAAGGTCCTGCTCTC TTTAAGAGCAGACACAGGCAGCTACCCACTTGCATCCGTTCAGGATGCAAGTAACGTGGCAGCTTACCTTTGGAATAACT TCTTGGGGGGACATTCATCGTCTCGCCCACTCGGTCCTGCTATCCTTGATGGAATTGACTTTGATATTGAAGGCGGATCG AACCGTCACTGGGGTGATCTTGCTAGGTTCCTGAAAGGGTATGGCAAGGAAGTGTACATAACCGCAGCTCCTCAGTGCCC GTTTCCTGATGCTTGGATAGGCAATGCTCTCACAACCGGACTTTTCGATTATGTTTGGATCCAGTTCTACAACAACCCGC CTTGCCAATACAATACTTCTGGGGAAATTACCAACCTTGAAGATGCGTGGAAGCAGTGGACATCAAGTATCCCTGTCAGC AAGGTATTCTTAGGGTTACCAGCTTCACCAGAGGCTGCAGGCAGTGGATTTATCCCTGTTGCTGATCTTATTTCCACGGT GATTCCAGCCATTAAGGGTTCTTCTAAATATGGAGGTGTGATGTTGTGGTCCCGGTTCTATGACGTTCAAAGTGGTTACA GTTCTGCTATTAAGAGCCTTGTTTAA
CDS sequence (LotjaGi2g1v0223200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTGAGGTCACGAATCTCAATCTTATTCTTCTCCTTAACACTGTTAGTAGCAGTAGCAACCGGTTCTAATAATGC TGGCAAAATTGTAACCTACTGGGGCCAGAATGGTTATGAGGGCACCCTGGCAGAGGCTTGTGCCACAGGGAACTATGAAT ATGTGATCATAGCCTTCCTGCCAACATTTGTCACTGGCCAGACTCCCATGATTAATCTAGCTGGTCATTGTGACCCACAT GTTAATAATGGGTGCATTGGCGTAAGCTCTGACATTGAGTCGTGCCAAGCCAAAGGCATCAAGGTCCTGCTCTCTTTAAG AGCAGACACAGGCAGCTACCCACTTGCATCCGTTCAGGATGCAAGTAACGTGGCAGCTTACCTTTGGAATAACTTCTTGG GGGGACATTCATCGTCTCGCCCACTCGGTCCTGCTATCCTTGATGGAATTGACTTTGATATTGAAGGCGGATCGAACCGT CACTGGGGTGATCTTGCTAGGTTCCTGAAAGGGTATGGCAAGGAAGTGTACATAACCGCAGCTCCTCAGTGCCCGTTTCC TGATGCTTGGATAGGCAATGCTCTCACAACCGGACTTTTCGATTATGTTTGGATCCAGTTCTACAACAACCCGCCTTGCC AATACAATACTTCTGGGGAAATTACCAACCTTGAAGATGCGTGGAAGCAGTGGACATCAAGTATCCCTGTCAGCAAGGTA TTCTTAGGGTTACCAGCTTCACCAGAGGCTGCAGGCAGTGGATTTATCCCTGTTGCTGATCTTATTTCCACGGTGATTCC AGCCATTAAGGGTTCTTCTAAATATGGAGGTGTGATGTTGTGGTCCCGGTTCTATGACGTTCAAAGTGGTTACAGTTCTG CTATTAAGAGCCTTGTTTAA
Protein sequence (LotjaGi2g1v0223200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLRSRISILFFSLTLLVAVATGSNNAGKIVTYWGQNGYEGTLAEACATGNYEYVIIAFLPTFVTGQTPMINLAGHCDPH VNNGCIGVSSDIESCQAKGIKVLLSLRADTGSYPLASVQDASNVAAYLWNNFLGGHSSSRPLGPAILDGIDFDIEGGSNR HWGDLARFLKGYGKEVYITAAPQCPFPDAWIGNALTTGLFDYVWIQFYNNPPCQYNTSGEITNLEDAWKQWTSSIPVSKV FLGLPASPEAAGSGFIPVADLISTVIPAIKGSSKYGGVMLWSRFYDVQSGYSSAIKSLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 23 | 23 | - | – | |
SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
Phobius | 1 | 6 | 6 | - | – | |
SignalP_EUK | 1 | 23 | 23 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
PANTHER | 5 | 299 | 295 | 1.4E-171 | – | |
PANTHER | 5 | 299 | 295 | 1.4E-171 | – | |
TMHMM | 7 | 24 | 18 | - | – | |
Phobius | 7 | 18 | 12 | - | – | |
Phobius | 19 | 23 | 5 | - | – | |
Phobius | 24 | 299 | 276 | - | – | |
SUPERFAMILY | 27 | 296 | 270 | 4.5E-89 | ||
CDD | 28 | 297 | 270 | 5.23568E-134 | – | |
Gene3D | 28 | 299 | 272 | 5.0E-92 | – | |
Pfam | 29 | 284 | 256 | 1.6E-22 | ||
ProSitePatterns | 147 | 155 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0223200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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