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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0227100 |
| Transcript ID | LotjaGi2g1v0227100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT5G56590.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13; TrEMBL-Plants: tr|A0A072UBN3|A0A072UBN3_MEDTR Glucan endo-1,3-beta-glucosidase-like protein; Found in the gene: LotjaGi2g1v0227100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68408435..68412154) extracted from Lotus japonicus Gifu genome v1.2.
GTGATTAGAGACTCATATACCAAGGGTGTACGGTAGTGGGATACAGAACAAACATGCTAAATCCTGGAACCGAGATGAAT GTATAAACTCCATTTGAGAAATGAATTTGAGGTCCGGTACTTTTATGCTGACAACGGTCTGAAGACACTCTTCACTGTGT TGAGTTACCCTGCTCTATTCCACTTCTGCATTGGGGTCACAGTCAATGCCTGCAAAGTGCAGACAAAACAAGAAACTGCA ACTAATAATATTAATAACAAATACATCCTGTCCACTCCAATCAACAGAGACTCAAAAAGTAGCTTCACCCTCTCTGAGCA CCATTGAACCATTCCAAGGAACAAAGCAATGGCAAGAGAGTTTAGCTTCATCTTTGCTGCATCACTTCTGCTTATGATTC TGGGTTTGTGCTCTTTTCTTCCTTTCTTTTTACATTATTATACTCATGTTTATCTCAGTCTTGTTACAGCTCAGTTGTGT TCATGTTTGTGTGTAAATAAATACACTTGTTTTCTGTATTTTGATTCATAGATTTTGTGTGATGGGGGTGTGATTTCTTA CCTTACTTGTATAAGACCACCGTTTTCTCAGAGCTATTTTCTCCCTCTCTTTTGGTGACTCTGATGTAGGTTGCTGTACA ACAATGTCCTTTGTTTCCAAGGGCTAGATTGTGAGCCTTCAACTGGCTTACCTATCACATGGTCCTCAAACTACGTTTTA CTTCTATTTAGGCATTCCCTCCCTGGGTTCTTAACAGTAAAAATGATATGAGCTTGCTTGGAAGTTGTTTATGAGAAAGG AATGCTTTTTAATTTTAGTTAGATAGGTTGAAGTCCAACTTTTTGAAGCACAATAATATCAATCATGGAGTTTCATTTTA CTAATGGCTTGCATAGCTCACATTTGGGTAAAAAGAGAATATCATTGGTTATTTGTTACATATAAAAATTGCTTTTTGTT CCTAGAAGTATCATTTTACTAATGGCTTGCTTTTAAGATAGAGGTTTCCACACTAGTAAAGCTGGAATTTTCTTTCTTTC TTTCTCTCTCTCTCTCAAGTCTTATCTAACAGATCCATTGAGTTCTTTGCAATTGTTAATTGATTTTTGTGAAATTTTGA CAGATTGTTGCAATGGTAGTTTTGTTGGAATTTGCTATGGAAGGAATGCTGATAACCTTCCTACACCTGATAAGGCGGTC CAACTGATTCAACTTCAGAAAATAAAATATGTTAGGATCTATGATTCTAACATACAGGTTCTGAAGGCTTTTGCAAACAC TGGAGTTGAGCTCATGATTGGGATTCCAAATCTAGATTTGCTTCCGTTTGCCCAGTTCCAATCAAATGCAGACACTTGGC TGAGAAACAGCGTCCTCCCTTACTACCCAGCCACTAAGATCACATACATAACTGTTGGTGCAGAAGTCACAGAAAGCACC AGCAACATTTCAGCATTGGTAGTGCCTGCTATGAACAATGTCCTTGCAGCCCTCAAGAAAGCTGGACTTCATAAAAAGAT TAAAATTTCCACCACCCATTCCCTTGGGGTTCTGTCTCGATCGTTCCCGCCTTCTGCCGGTGCTTTCAGTGGCAAACATG CTCACTTCCTGAAGCCATTGCTAGAATTTCTTGCTGAGAACCAGTCACCTTTTATGGTTGATATATATCCTTACTATGCT TACCGAGACTCTTCGAACAAAGTGTCCTTGGACTATGCCCTTTTTGAATCTTCCTCTGAAGTTGTTGATCCAAACACTGG TTTGCTGTATATGAACATGTTTGATGCCCAGATTGATGCTATTTATTTTGCACTGGTGAGTCTGAATTTCAGGACAATTA AGGTCATGGTCACTGAAACTGGTTGGCCTTCAAAAGGATCGCCGAAGGAGACAGCTGCTACTCCTGATAATGCACAAACA TACAACACTAATCTGATACGGCATACTATTAACGACACCGGCACGCCTGCGAGGCCCGGAGAAGAGTTGGATGTCTACAT TTTCTCATTGTTCAACGAAAATAGGAAGCCTGGTTTGGAATCTGAGAGGAACTGGGGATTATTCAATCCAGATCAGACAA GTGTGTATAGCCTAGATTTCAGCGGAAAAGCTGATGTTGATGTGAATGTGACTACAGATGGAAATGTAACCGGATCAAAT GGAACAACATGGTGCATCGCTTCGAGTAACGCCTCACAGATTGACTTGCAGAATGCCGTAGATTGGGCTTGTGGTGCTGG CAATGTGGACTGTACTGCTATCCAGCCTAGCCAGCCTTGTTTTGAGCCAGATAACCTTGTCTCACATGCATCATACGCTT TTAATACCTATTATCAGCAAAATGGGGCTTCAGATGTGGCTTGTGGTTTTGGAGGGACTGGTGAAATAGTCGATAAGGAT CCGAGTATGTTCATTGCTTCCCATCATCAATTTTGCTTTTCTGTTTTCTGTCGGTTTTTGTCATGTACAAATTTGCTTGG CAACTTTTGCATACTTATTGTTATCTCCAACTCTGCAAATATTTTGGAGAAGGGTTGTACTTGTTTGACATTATAGTCCA TAATATTAGATCCTTTGCTAGCTCTGTTTTCAAAAATCTATTCTAATATGTAAATTGAAAACCATGTGAGTAGAGCTATA GAGAAAGTCATTAGAGTTTGCACTAGAATGTGTATGTTATGTGTACAATCTGTTTTGAAAAAAGCTAGTCTACTATGAAA ACCATGTGACTAGAACTGTAGAATTAAGTAATTAGAGTTGAAGGATTTGTTTTGTATGTGTACAAAGTACCACAATGACT GCACAGATAGTAAGTTGCTGGATATTATTGTCTCTCATACTTGCTGATATCATTGCTGTTTGTTTAATCATCCGTGTTGC TGAGAGTTATTGATTAAATTGGTTGTCATTCTGGCTTTGTTCTGTGCACCCAAGTATTTCTTGAGACTAGTTTAGCTACT GATTAACTACTTGTTTTTAATTCTGCAGCCTATGACAACTGCATCTACATGAGAACTGGGTATGTTCACTCCTTTTGATG TTGTTTTGTCTGTTATTAGACGTCCTAAAATTATTATATTGTATGGTATTTATTATCAAGATTCAAGACTAGCATGACAT TTGTGTTTGTTCTTCCATTGTTTATGCAGAAATAACAAAACCATGGCTAGTAATACAACAGCGATATCTTCACTTCCACC CTCCTCGCTTCCATCCTCCTCATCCCAGGAAAAAGTTCACACATCGATCTCTCATGTTCTTGTTTTAACCTTTCTCCTAT TGTTGATTCTGGAACGAGCCAGACATGCTTGATTGATGACTAAAAGAAAAAAGGCTAGCTTTTTATTGTAGAAAACGTAG TATGATTGATGATTTTACCATGTATCATGTGTGTATGCTGCTTTTGGCTTGATGGGGGGAGTAGTGATTTGAGAATTGAG ATGCTTTGTGACTATGCATCAGCAAAATGCAAAATTGTATGAAAAAATTTAACTGCTGTAGAGATTGATTGGAACAATAT TGCCCCCAGTTTTGTAATCGAGTGACAGGCCAAAACAGCTAGTCTAGATAACCGACTTTTCTGTGATTTATTTACGTCCA GTTTAGTAGTTTAATGTAGGGTCAGAATCCAATTATTCAATTATGTTAAGAAATGAGCTAATTTGCTGAACATATTGCCC TTATATTATAGGGTTATGTGGACGGTAAAGCAAATATTGG
CDS sequence (LotjaGi2g1v0227100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGAGAGTTTAGCTTCATCTTTGCTGCATCACTTCTGCTTATGATTCTGGATTGTTGCAATGGTAGTTTTGTTGG AATTTGCTATGGAAGGAATGCTGATAACCTTCCTACACCTGATAAGGCGGTCCAACTGATTCAACTTCAGAAAATAAAAT ATGTTAGGATCTATGATTCTAACATACAGGTTCTGAAGGCTTTTGCAAACACTGGAGTTGAGCTCATGATTGGGATTCCA AATCTAGATTTGCTTCCGTTTGCCCAGTTCCAATCAAATGCAGACACTTGGCTGAGAAACAGCGTCCTCCCTTACTACCC AGCCACTAAGATCACATACATAACTGTTGGTGCAGAAGTCACAGAAAGCACCAGCAACATTTCAGCATTGGTAGTGCCTG CTATGAACAATGTCCTTGCAGCCCTCAAGAAAGCTGGACTTCATAAAAAGATTAAAATTTCCACCACCCATTCCCTTGGG GTTCTGTCTCGATCGTTCCCGCCTTCTGCCGGTGCTTTCAGTGGCAAACATGCTCACTTCCTGAAGCCATTGCTAGAATT TCTTGCTGAGAACCAGTCACCTTTTATGGTTGATATATATCCTTACTATGCTTACCGAGACTCTTCGAACAAAGTGTCCT TGGACTATGCCCTTTTTGAATCTTCCTCTGAAGTTGTTGATCCAAACACTGGTTTGCTGTATATGAACATGTTTGATGCC CAGATTGATGCTATTTATTTTGCACTGGTGAGTCTGAATTTCAGGACAATTAAGGTCATGGTCACTGAAACTGGTTGGCC TTCAAAAGGATCGCCGAAGGAGACAGCTGCTACTCCTGATAATGCACAAACATACAACACTAATCTGATACGGCATACTA TTAACGACACCGGCACGCCTGCGAGGCCCGGAGAAGAGTTGGATGTCTACATTTTCTCATTGTTCAACGAAAATAGGAAG CCTGGTTTGGAATCTGAGAGGAACTGGGGATTATTCAATCCAGATCAGACAAGTGTGTATAGCCTAGATTTCAGCGGAAA AGCTGATGTTGATGTGAATGTGACTACAGATGGAAATGTAACCGGATCAAATGGAACAACATGGTGCATCGCTTCGAGTA ACGCCTCACAGATTGACTTGCAGAATGCCGTAGATTGGGCTTGTGGTGCTGGCAATGTGGACTGTACTGCTATCCAGCCT AGCCAGCCTTGTTTTGAGCCAGATAACCTTGTCTCACATGCATCATACGCTTTTAATACCTATTATCAGCAAAATGGGGC TTCAGATGTGGCTTGTGGTTTTGGAGGGACTGGTGAAATAGTCGATAAGGATCCGACCTATGACAACTGCATCTACATGA GAACTGGAAATAACAAAACCATGGCTAGTAATACAACAGCGATATCTTCACTTCCACCCTCCTCGCTTCCATCCTCCTCA TCCCAGGAAAAAGTTCACACATCGATCTCTCATGTTCTTGTTTTAACCTTTCTCCTATTGTTGATTCTGGAACGAGCCAG ACATGCTTGA
Protein sequence (LotjaGi2g1v0227100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAREFSFIFAASLLLMILDCCNGSFVGICYGRNADNLPTPDKAVQLIQLQKIKYVRIYDSNIQVLKAFANTGVELMIGIP NLDLLPFAQFQSNADTWLRNSVLPYYPATKITYITVGAEVTESTSNISALVVPAMNNVLAALKKAGLHKKIKISTTHSLG VLSRSFPPSAGAFSGKHAHFLKPLLEFLAENQSPFMVDIYPYYAYRDSSNKVSLDYALFESSSEVVDPNTGLLYMNMFDA QIDAIYFALVSLNFRTIKVMVTETGWPSKGSPKETAATPDNAQTYNTNLIRHTINDTGTPARPGEELDVYIFSLFNENRK PGLESERNWGLFNPDQTSVYSLDFSGKADVDVNVTTDGNVTGSNGTTWCIASSNASQIDLQNAVDWACGAGNVDCTAIQP SQPCFEPDNLVSHASYAFNTYYQQNGASDVACGFGGTGEIVDKDPTYDNCIYMRTGNNKTMASNTTAISSLPPSSLPSSS SQEKVHTSISHVLVLTFLLLLILERARHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| PANTHER | 8 | 478 | 471 | 2.8E-249 | – | |
| PANTHER | 8 | 478 | 471 | 2.8E-249 | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 484 | 461 | - | – | |
| SUPERFAMILY | 26 | 344 | 319 | 1.69E-89 | ||
| Pfam | 26 | 344 | 319 | 4.3E-97 | ||
| Gene3D | 26 | 344 | 319 | 3.3E-128 | – | |
| ProSitePatterns | 257 | 270 | 14 | - | ||
| SMART | 367 | 452 | 86 | 8.8E-44 | ||
| Pfam | 367 | 438 | 72 | 5.9E-20 | ||
| Phobius | 485 | 503 | 19 | - | – | |
| Phobius | 504 | 509 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0227100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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