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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0228000 |
| Transcript ID | LotjaGi2g1v0228000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP-1 complex subunit sigma-like protein; TAIR: AT2G19790.1 SNARE-like superfamily protein; Swiss-Prot: sp|O82201|AP4S_ARATH AP-4 complex subunit sigma; TrEMBL-Plants: tr|I3T011|I3T011_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0228000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68560625..68567161) extracted from Lotus japonicus Gifu genome v1.2.
AAATAAAAGAAGGTCAAAGATCGTGGAGAAAAAGGGTGGGAAGACAAGGGTAAAGGAGTTTTCAGCAGAATCGAATGGGG ATCCGATTCGTGTTGATGGTGAACAAGCAAGGCCAAACACGCCTTGCCCAGTACTACGAATACCTCACTCTCGAAGAAAG ACGAGCCCTTGAAGCTGAAATCGTTCGCAAATGCCTCGCCCGTAACGAACACCAGGTTTCATAATTCATGTCTATGTTAC ATTTCATATATGATTTCATTATTCATTTTAATGTTCCTGTCATGTTTATTTGTTTTCATCATAGGTTCTATTTTGATGTT GTGCTGTGTATCAAGTATGAACTATTTTACATTTGTTTATTCTAAGTGTGCTGGGGTTGATACATTTTACAGTGACTGAG TTTTGTTTTGTAACTGATACATTTTACTTGATGGGCAGTGTTCATTCGTCGAGCATCGCAATTACAAGATTGTATATAGG CGGTATGCGTCTTTGTTCTTCCTCGTTGGAGTTGATGAAAATGAGGTAGATTACTTTCTTTATGTCATGTTTTCAATTTG ATCATGGAAGGAAATGAATGTTTTGATGTTATTGTTAGAATATAATATCAAACCGTTCATGTGGCGCTTACCCAACAGCT TAAGCTTTGGGATAAGTGGTTATTTGACATGGTATCAGAGCCTCTATGACTTAGCGGCCTAGAGTTCAGCTTAAGCTTTT GGGATAAGTGGTTATTTGACAGCTAAGCTAAATCTTTTAAATGCTTAAAACTCTTCATGACTTAAATCATTGTGTGAAAT GTGAAATAATTTAGCTATGAACTTCATGCTCATGGCTTCAAGAGTCATCAGACCCAAAGGAAGATTTTCCTTGTCCAAGT GAATGGTTAAAGAGCATTTGACTATAAAATAAGTACAGCCTGAAGTTATTAATCTTGTTAAATATGTGCAATGATATGAA GAACTTTTATATGGACCCATTTTGTGTAAACCTGCTATGTTTTAAATTCTGCTTGAGTGCTTATTCAGTTATTCTATCTT TTGTGTAAAATGTTGCAGAATGAGCTGGCTATTTTGGAATTTATACATCTCTTAGTTGAAACCATGGATCGTCATTTTGG CAATGTGGTAAGTACTGCTGCTATTGGAATTTGGTTTGGTTTTATGTTTCTTGAATTTCCTAGCTTGTCTCCCCTGCCTG CCTTCCAAGTGTTCCTTTGTTGTTACTTCCATTTTCTGAAAGTAGATTCCAGTTAAGATGCTTATATTTCTTGTCAACTT ACATTTGCAGTGTGAGCTAGATATCATGTTCCATTTGGAAAAGGCACATTTTATGCTGGAGGAAATGGTCATGAATGGTT GCATTGTGGAGACAAGCAAATCAAATATTCTGACTCCAATTCAGCTGATGGATAAAATGTCTTGAAGGATGAGAAAGAAG TATGCTCAGTGATTTATGTATCACTATTGACTCTCATTACTATCTTTGTGTGTATTTTTTCTTTCCTTTGTATGAATGAT AACACAATACCGTGATCACAAAATTTATAAATTTCAAATGCAAGACACGATGAACACCTGTCTCTGCTTACCTACCAGTT GTGGCATCGCTTGTGGTCATACTTATTTATATTAATTATCAGACTTGCACTATCCATTTTCTAGATGAAGGGAGGTAGCT GAAGATTTATTATCTTATTTTGAGGTTCAATTACATGGACATTAGCGGAGAAGGGGAAGGGATGGTGATTTGCATCTAAA ATGTAGCCTAATGTAGATACCAAATAATGTACTGTAAGGGTATCTAGATGTGACAATTTCGCGGCTGTCAGTGTAATTTT TACATGGAGTTATCAATACTATGGGAATTTAGTTGCAGATCGGTTGGCTATCTCCTATACTAAGCATGGCCAATATAGAA TTTCGATGGCACTTTTCCTGTCTTTTTTCTAGGCTGTTATCTAGTTGTCAAGTTGTTGCTAGTGTTGGTATTGTCAAGTT GTTGCTAATGTTGGTTATCTTTGTATGGACTTCAGGTTGTATTTAGATAACACCCAATATATATTTCTCCCTTTTTAATG AAAAATAATAGTAAATCATCAAGAACATTGTGTTGGAATTTGTTTTACATGTATATATTTCTAGCGTTCTTGCCCAAGCG GCACATTGTTCAGTTGATAGCTGATTGTCTATAACCAGGCTTTCTTAGCATGAACCTATAAAAGAAGCAGCAATTTCCTT TGAATGAATTTGGGTTCTAAACAAATCCCCACTTTGAAATAAAAGTAGCACACTTGATAGCAAATCTTTGGAGACCATGC TTTCTTTTAGAGTAAACCTATGGAAGAAGTTGCAATTTCCCTTAAACCAGTGTTAATGGTGCATGGTGGAAAGCCAAAAA CAGGCCACACAAATGCCGATGGAGTATGGCGGAATATTGGCCATGACGGCTTGCTAGAATTCTGCCATGAGATTCAGCCA TAGCGTATATTTGGCAATGGCGGCATATAGGCCACAACGGATTGCTGAATTCTGCCATGAGATTCAGTCATAGCGTATAT TTGACAACACTGCCAAACTGTACCAAGTGACCCTTCCTTTCCTATTATTTTCTATTTTGAGCTTGTTTAAAGGAAAGGGA GGAAAAGAGGGGGAAGAAAAAGCTTCAGAGCCGGAAGTGATATCAATACTCGAGCACTGTCCCTAAAAACTTGTCCTTCC TGCAACTATTTTGAGCAAGCGCTAAGTATGAGTATGGTAACACATAGGATCTCTATTCATGATGGTATTTAACTATTTAT ACAAAAGGGTTTAAAAAATTTTGATTTTCAATTTGAAATGTCTGGGTTTTACACGTTTCAATCTGAATTAATCAATATAA TTACACAGCAGCTGGACATCCACCCTTTCTAGGGTCACTGACTGCTGTTAGAATACCATGCATTCCATGTGAATTGGTTT TTTCACCAGTTTTCCTGTTCAATTTAATAGGTGTATCGAGAGTTTGGACGATCAGCTGAGTGACAGCTTTTACAGCACAC TCACACAGTTCATGACCTCTCTCTTCCAGGAAATGCCTACTTTCTTCTGCAAGCCCAATGTGATCACCATTATAAGCCGT CAAGTGCTCGTAGCTAACTACATTTGGTATTAGCTGCATGAGATAAAAGATCCAAATTAGATACAAGTTCGGAGCATCAT CAGACATTAAGAAACTACTTGAAGAAAGAAAGTAGTAAGGACCTTGTGATAGATCCTTGGTCTCAGAACTGCATCCAAAG GTTTCATTCCCAAGATGAAATGATTGAGAAAGACTTGAGCCACGGCTGGAATGATGTTCATTCCGCCGCTGCCTCCAATG ACCCCGACCAACTGGTCATCCTGCAAATGATTTAACAGGTTAGTTATTGCAAACTTTTTGAATTCCTCACTACAAAACAA TGCCGAGTAGCTTGCTGAAAATGTGTTGGGTATAGGAAATTGCTGCCATTTACAATGAGAAATACCTTAGTGATGATTAT AGGAGTCATGGAAGACAATGGTCTTTTGTTTGGTTTGATAAAGTTTGTTGGAGCTGGAGGTAGTTTATCAGGGGAGACAT CAGTTGGCGTAGAGAAGTCATCCATCTCATCGTTGATTACAATACCGGTTGAAGGAGAACGAACCCCAGCTCCAAAATGA TAGTTAACGGTTGTTGTCAGTGATACAGCATTTCTATCAGCATCCACTACACACAAATGGCTTGTTCCGTGGTCTCTAAG TTGGCTCCATCTGCACAGCAAGATTATGATCACCCATTATATTAACAACTCAGTCACTTTGCAACATATCAAGCGAAAGT CATTCAAATTACTACACATCAAGTAGATTAAACCTGTTCATATAGTACTCTGGAGGGAAAGTAGTGTTATCAAGTATCTT TTGCTGAATATCTTTTGCAAAAGATGGGGAGAGCATTTTGGAGACAGTACTACTGATGTTTTCGAAGTCTGGGTCACCCA AGTTCATTCTGATGGCATACGTGTGTTTAAGAGCTTCTATTAGTCGATGAAGACCCAGATTTTCATTTGCAGCATCAGGA CTTCCATAGCTGTTCAAGATGTTCAAGATCTGTCCATACCAATAATTAGAGGTCTTTAAACCACTCATGTACTTTTACCT TACAATTTAATCTTTTTAGGATAGTTAGCTTAGAACAACAAACATATGGATTTCCATATTTTCAGTAATAGACTCATTAA ATCATGAAAGAGTTGATAATGTCAAGATTTCAACAGAAAAACTTGGAAATGACACAGAGAAAAGAAGGGATAGGAATCTA CCCACCAGAGAAAGAGAGAGTGTTCCACTTGAAGGAGGTGGCATGCCATATATGGTGTATCCCATCACATTCACAGTCAC TGCATCTGTTATTTCCACCTTGTAATTGTGCAAATCCTCCATTGTTAGAATCCCACCAACTTCTCTCACATCCTTTACTA ATTTCTCGCCAATGGTTCCATTGTAGAAAGCTTGTGGCCCTTGCTCTGCCACTACCTCTAAGGTGTTACCAAGTTCCGGG TTACGACACACCTCCCCTTCTTTCAACAAAATTCCATTAGGTGCATATATATTTCTTAACCCAGGATCATTCATTATCTT CTTTTCTGAGCTAGCCATGTAATCTCCAAGAGTAGCAGACACTACATAACCATCTTTAGCAAGTTTTATAGCTGGTTGGA ATAAGGTCTTCCATGGTAATCGTCCATATTTCAACCAGGCTGCATGAAGGCCAGCTATATCACCAGGAACTCCCATTGAC AATGCGCCTGCGTTCTTAGATTCTGGATTGTTCTGATACATATTCTGTTCACAGTCACATTCACATGTTTACACAAATGT AAGTTGCATATAGATTTCTGCATAAGAAAGTGATCAAATGATTGATTGCCTACCAAGCATGGACTATATCTTATAAGCAT AAGTTAATTTTGTTTGCTTAAGCAATTTCAATCATGAGTTTGTTTAGCAGAAAGAATTAACCGCAAACCTGCGAAGCAGC TAATGGAGCAGTTTCTCTCATGTCAAAAGCTTGGGCTTGGGAGGTAGAAGAAGACCGGACAACCATGAAACCGCCGCCTC CTATGCCGCTTGATGCTGAAAAAACAACACCAAGGCATAATGCAGTGGCCACTGCAGCATCAACAGCATGCCCACCCTGC CTGAGCATTGAGACACCAACTGCTGAACACCGGCAATCATCAGCTGCAACAACTCCTACCTGTGATTCAATGACATTTCC CTGATTTGCTTCCACTCCCCCATCATATTTTTCTACCCCTTGTAGTCTCTCGAAACTTATGTTGCCTCTGATTGCTAGCA CAAAAACTGGAAATGGAATTATCTTGAGCATTAATACTACAGTACATCAACATGATGATCAAATTTCCTTAGTGTATAGC AGATATTTTGGCACAGAAGTTGAATGTAACAGTCACCCTGGGAGGTGTAAAGTTTCCAGGTTTCTACATATTTTGGTAAA AGTTAAGGTATATGTTTTAGTTCACACAATCTAGCAAGTTCAACATCTAGCCTTTTCCACATGATTCTCCCCCATGTCTC TCCACCTCTAAAAATTTGACTATGCAAAATACATCAAACAACTTAATTAAACGATTAAGTCAATAAGCACTTATACAAGA GTGCTTATTCCTTTTATAAGCAAATAGTTCAAAAAAACTTATACACAAGTATGAGTACTTATTCATGAGGTAAAAAGTCA AAAGAGCTAGACCTTCTGGTCAAAACACACCAATGGTGGTGGTTTGGTAATTCATTTTGTTTTGACCCCACAATCAGTCA TCTGAAAATTCACACATCTAAACAATTCATCCAAGACAAAACGTTATCTTTTGACCTTCCCCGGCAATAACACAGTGTGA ACCGTGGATATACCCAAGTGGGTTGATCGTATATTTTGATTCAGAGCAATCTCTGTAGTCAAATTACAAGAATACATCAA ACCACTTCTGTAACAAGGAAAATACTTTTATATGCACACAGTTGATTGATCCAAGAAAATTAACACCTTCTGAGTCAAGC ACTGATCAGCAAAAAGAGTTCCCAGAACAGAGGAATTGAATCAAAAAGGGAAAAAGTGAGAGAAAAAAAACTGACAAGTG ACAGCAACAGAGGTGAGAAGGGACCGGAGAAACACGTTGGAACTGCTTTTACTGCGCAGAGGATCATCAGGTCGTTGAAG CAGAGGAGAATCCATCACTGTGAACGGTGGATTCTCAGGGGAATGGAAGATTCAATTGAGTTGAGTGAGCCAATCAACAA ACTCAACTCAACAAACAGATATTAACAGTTATAGCTAAGGTGGGTGTTTTGGATTGGATGTTTTTGTTGTTGTTGTTGAC TTGATTAGGATTTGGAAATTCAGTTGATCCTTTTGTTAAGTTGTTACAACATTACATATAGTTCCCTTTTTCGTAAAGAA ACAAACACATTTTCAATTTTCAAATAATATTTGTTGCGTCTAAGGTTAAGGGAAAAT
CDS sequence (LotjaGi2g1v0228000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATCCGATTCGTGTTGATGGTGAACAAGCAAGGCCAAACACGCCTTGCCCAGTACTACGAATACCTCACTCTCGA AGAAAGACGAGCCCTTGAAGCTGAAATCGTTCGCAAATGCCTCGCCCGTAACGAACACCAGTGTTCATTCGTCGAGCATC GCAATTACAAGATTGTATATAGGCGGTATGCGTCTTTGTTCTTCCTCGTTGGAGTTGATGAAAATGAGAATGAGCTGGCT ATTTTGGAATTTATACATCTCTTAGTTGAAACCATGGATCGTCATTTTGGCAATGTGTGTGAGCTAGATATCATGTTCCA TTTGGAAAAGGCACATTTTATGCTGGAGGAAATGGTCATGAATGGTTGCATTGTGGAGACAAGCAAATCAAATATTCTGA CTCCAATTCAGCTGATGGATAAAATGTCTTGA
Protein sequence (LotjaGi2g1v0228000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEAEIVRKCLARNEHQCSFVEHRNYKIVYRRYASLFFLVGVDENENELA ILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILTPIQLMDKMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 142 | 142 | 1.3E-77 | – | |
| PANTHER | 1 | 142 | 142 | 1.3E-77 | ||
| Gene3D | 2 | 143 | 142 | 1.6E-60 | – | |
| PIRSF | 2 | 143 | 142 | 3.9E-58 | ||
| SUPERFAMILY | 3 | 141 | 139 | 9.16E-44 | ||
| Pfam | 3 | 142 | 140 | 7.5E-47 | ||
| CDD | 4 | 141 | 138 | 2.55347E-95 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi2g1v0228000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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