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IPR016635 is a Adaptor protein complex, sigma subunit.
<p>The adaptor protein complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules [[cite:PUB00096960]]. Adaptor protein complex 1 (AP-1) is a heterotetramer composed of two large adaptins (gamma-type subunit AP1G1 and beta-type subunit AP1B1), a medium adaptin (mu-type subunit AP1M1 or AP1M2) and a small adaptin (sigma-type subunit AP1S1 or AP1S2 or AP1S3). Subunits of clathrin-associated adaptor protein complex 1 play a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or in endosomes.</p> <p>This group represents an adaptor protein complex, sigma subunit.</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: AP-3 complex subunit sigma-like [Cicer arietinum] gi|502153217|ref|XP_004509260.1| | 9 | ||
| – | PREDICTED: AP-3 complex subunit sigma-like [Cicer arietinum] gi|502153217|ref|XP_004509260.1| | 11 | ||
| – | PREDICTED: AP-3 complex subunit sigma-like [Cicer arietinum] gi|502153217|ref|XP_004509260.1| | 12 | ||
| – | PREDICTED: AP-1 complex subunit sigma-1-like [Cicer arietinum] gi|502134135|ref|XP_004502012.1| | 11 | ||
| – | PREDICTED: AP-1 complex subunit sigma-1-like [Cicer arietinum] gi|502134135|ref|XP_004502012.1| | 10 | ||
| – | PREDICTED: AP-1 complex subunit sigma-1-like isoform X1 [Cicer arietinum] gi|502147493|ref|XP_004506804.1| | 4 | ||
| – | PREDICTED: AP-1 complex subunit sigma-2-like [Glycine max] gi|356499273|ref|XP_003518466.1| | 8 | ||
| – | PREDICTED: AP-4 complex subunit sigma-like [Cicer arietinum] gi|502138730|ref|XP_004503510.1| | 8 | ||
| – | AP-2 complex subunit sigma-1 [Medicago truncatula] gi|357438415|ref|XP_003589483.1| | 9 | ||
| – | AP-1 complex subunit sigma-1; TAIR: AT2G17380.1 associated protein 19; Swiss-Prot: sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1; TrEMBL-Plants: tr|I3T1A3|I3T1A3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0003000 | 12 | ||
| – | AP-1 complex subunit sigma-1; TAIR: AT2G17380.1 associated protein 19; Swiss-Prot: sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1; TrEMBL-Plants: tr|I3T1A3|I3T1A3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0003000 | 12 | ||
| – | AP-1 complex subunit sigma-1; TAIR: AT2G17380.1 associated protein 19; Swiss-Prot: sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1; TrEMBL-Plants: tr|I3S6L2|I3S6L2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0056300 | 13 | ||
| – | AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A151SEJ3|A0A151SEJ3_CAJCA AP-3 complex subunit sigma-2; Found in the gene: LotjaGi1g1v0416600 | 12 | ||
| – | AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A072TSQ8|A0A072TSQ8_MEDTR AP-1 complex subunit sigma-like protein; Found in the gene: LotjaGi1g1v0416600 | 12 | ||
| – | AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A151SEJ3|A0A151SEJ3_CAJCA AP-3 complex subunit sigma-2; Found in the gene: LotjaGi1g1v0416600 | 12 | ||
| – | AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A151SEJ3|A0A151SEJ3_CAJCA AP-3 complex subunit sigma-2; Found in the gene: LotjaGi1g1v0416600 | 12 | ||
| – | AP-1 complex subunit sigma-like protein; TAIR: AT2G19790.1 SNARE-like superfamily protein; Swiss-Prot: sp|O82201|AP4S_ARATH AP-4 complex subunit sigma; TrEMBL-Plants: tr|I3T011|I3T011_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0228000 | 10 | ||
| – | AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A151SEJ3|A0A151SEJ3_CAJCA AP-3 complex subunit sigma-2; Found in the gene: LotjaGi4g1v0117300 | 12 | ||
| – | AP-1 complex subunit sigma-like protein; TAIR: AT2G19790.1 SNARE-like superfamily protein; Swiss-Prot: sp|O82201|AP4S_ARATH AP-4 complex subunit sigma; TrEMBL-Plants: tr|I3S5T8|I3S5T8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0443200 | 10 | ||
| – | AP-2 complex subunit sigma; TAIR: AT1G47830.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q84WL9|AP2S_ARATH AP-2 complex subunit sigma; TrEMBL-Plants: tr|A0A0B2RY87|A0A0B2RY87_GLYSO Phosphotransferase; Found in the gene: LotjaGi5g1v0006200 | 10 | ||
| – | AP-2 complex subunit sigma; TAIR: AT1G47830.1 SNARE-like superfamily protein; Swiss-Prot: sp|O50016|AP2S1_MAIZE AP-2 complex subunit sigma; TrEMBL-Plants: tr|A0A0B2RY87|A0A0B2RY87_GLYSO Phosphotransferase; Found in the gene: LotjaGi5g1v0006200 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd14833 | CDD | 1 | 4.76 |