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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR022775
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We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.899s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0120319.1
n.a. PREDICTED: AP-3 complex subunit sigma-like [Cicer arietinum] gi|502153217|ref|XP_004509260.1| chr0 53451188 53451763 +
2 domain predictions
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Lj0g3v0128539.1
n.a. Clathrin adaptor complexes medium subunit family protein isoform 3 [Theobroma cacao] gi|508708681|gb|EOY00578.1| chr0 58065324 58066905 +
2 domain predictions
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Lj0g3v0268169.1
n.a. PREDICTED: AP-3 complex subunit sigma-like [Cicer arietinum] gi|502153217|ref|XP_004509260.1| chr0 138864539 138870184 -
2 domain predictions
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Lj0g3v0268169.2
n.a. PREDICTED: AP-3 complex subunit sigma-like [Cicer arietinum] gi|502153217|ref|XP_004509260.1| chr0 138864539 138870184 -
2 domain predictions
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Lj0g3v0346919.1
n.a. PREDICTED: AP-1 complex subunit sigma-1-like [Cicer arietinum] gi|502134135|ref|XP_004502012.1| chr0 182024252 182026112 +
2 domain predictions
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Lj0g3v0346919.2
n.a. PREDICTED: AP-1 complex subunit sigma-1-like [Cicer arietinum] gi|502134135|ref|XP_004502012.1| chr0 182024252 182031553 +
2 domain predictions
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Lj2g3v1415400.1
n.a. PREDICTED: AP-1 complex subunit mu-1-like [Glycine max] gi|356497456|ref|XP_003517576.1| chr2 22438947 22442672 -
2 domain predictions
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Lj2g3v2985930.1
n.a. PREDICTED: AP-1 complex subunit sigma-2-like [Glycine max] gi|356499273|ref|XP_003518466.1| chr2 38530142 38532871 +
2 domain predictions
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Lj3g3v2666480.1
n.a. nonclathrin coat protein zeta1-COP [Glycine max] gi|351726924|ref|NP_001236887.1| chr3 32553711 32560255 -
2 domain predictions
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Lj4g3v0070720.1
n.a. nonclathrin coat protein zeta2-COP [Glycine max] gi|351727329|ref|NP_001236901.1| chr4 454112 456103 -
2 domain predictions
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Lj4g3v3031630.1
n.a. PREDICTED: AP-4 complex subunit sigma-like [Cicer arietinum] gi|502138730|ref|XP_004503510.1| chr4 40583311 40584809 -
2 domain predictions
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Lj5g3v0186710.1
n.a. AP-2 complex subunit sigma-1 [Medicago truncatula] gi|357438415|ref|XP_003589483.1| chr5 1640029 1642503 +
2 domain predictions
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LotjaGi1g1v0003000.1
n.a. AP-1 complex subunit sigma-1; TAIR: AT2G17380.1 associated protein 19; Swiss-Prot: sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1; TrEMBL-Plants: tr|I3T1A3|I3T1A3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0003000 LjG1.1_chr1 695813 697930 +
2 domain predictions
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LotjaGi1g1v0003000.2
n.a. AP-1 complex subunit sigma-1; TAIR: AT2G17380.1 associated protein 19; Swiss-Prot: sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1; TrEMBL-Plants: tr|I3T1A3|I3T1A3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0003000 LjG1.1_chr1 696342 697502 +
2 domain predictions
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LotjaGi1g1v0056300.1
n.a. AP-1 complex subunit sigma-1; TAIR: AT2G17380.1 associated protein 19; Swiss-Prot: sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1; TrEMBL-Plants: tr|I3S6L2|I3S6L2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0056300 LjG1.1_chr1 7895666 7899849 -
2 domain predictions
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LotjaGi1g1v0416600.1
n.a. AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A151SEJ3|A0A151SEJ3_CAJCA AP-3 complex subunit sigma-2; Found in the gene: LotjaGi1g1v0416600 LjG1.1_chr1 90995490 91004486 +
2 domain predictions
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LotjaGi1g1v0416600.2
n.a. AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A072TSQ8|A0A072TSQ8_MEDTR AP-1 complex subunit sigma-like protein; Found in the gene: LotjaGi1g1v0416600 LjG1.1_chr1 90995558 91003166 +
2 domain predictions
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LotjaGi1g1v0416600.3
n.a. AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A151SEJ3|A0A151SEJ3_CAJCA AP-3 complex subunit sigma-2; Found in the gene: LotjaGi1g1v0416600 LjG1.1_chr1 90995558 91003166 +
2 domain predictions
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LotjaGi1g1v0416600.4
n.a. AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A151SEJ3|A0A151SEJ3_CAJCA AP-3 complex subunit sigma-2; Found in the gene: LotjaGi1g1v0416600 LjG1.1_chr1 90995598 91003032 +
2 domain predictions
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LotjaGi1g1v0422200.1
n.a. AP-4 complex subunit mu; TAIR: AT4G24550.2 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q9SB50|AP4M_ARATH AP-4 complex subunit mu; TrEMBL-Plants: tr|I1JT85|I1JT85_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0422200 LjG1.1_chr1 91633578 91638641 -
2 domain predictions
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LotjaGi1g1v0499100.1
n.a. Coatomer subunit zeta; TAIR: AT4G08520.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3; TrEMBL-Plants: tr|A0A151SUF4|A0A151SUF4_CAJCA Coatomer subunit zeta-3; Found in the gene: LotjaGi1g1v0499100 LjG1.1_chr1 101498809 101508327 +
2 domain predictions
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LotjaGi1g1v0499100.2
n.a. Coatomer subunit zeta; TAIR: AT4G08520.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3; TrEMBL-Plants: tr|A0A151SUF4|A0A151SUF4_CAJCA Coatomer subunit zeta-3; Found in the gene: LotjaGi1g1v0499100 LjG1.1_chr1 101503538 101504977 +
2 domain predictions
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LotjaGi2g1v0228000.1
n.a. AP-1 complex subunit sigma-like protein; TAIR: AT2G19790.1 SNARE-like superfamily protein; Swiss-Prot: sp|O82201|AP4S_ARATH AP-4 complex subunit sigma; TrEMBL-Plants: tr|I3T011|I3T011_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0228000 LjG1.1_chr2 68560625 68567161 +
2 domain predictions
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LotjaGi2g1v0323900.1
n.a. AP-1 complex subunit mu-1; TAIR: AT1G60780.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O22715|AP1M2_ARATH AP-1 complex subunit mu-2; TrEMBL-Plants: tr|I1J553|I1J553_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0323900 LjG1.1_chr2 79899541 79906354 -
2 domain predictions
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LotjaGi3g1v0422300.1
n.a. Coatomer subunit zeta; TAIR: AT4G08520.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3; TrEMBL-Plants: tr|A0A151SHM4|A0A151SHM4_CAJCA Coatomer subunit zeta-2; Found in the gene: LotjaGi3g1v0422300 LjG1.1_chr3 83108516 83112696 -
2 domain predictions
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LotjaGi3g1v0422300.2
n.a. Coatomer subunit zeta; TAIR: AT3G09800.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2; TrEMBL-Plants: tr|A0A151SHM4|A0A151SHM4_CAJCA Coatomer subunit zeta-2; Found in the gene: LotjaGi3g1v0422300 LjG1.1_chr3 83109651 83111893 -
2 domain predictions
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LotjaGi3g1v0422300.3
n.a. Coatomer subunit zeta; TAIR: AT3G09800.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2; TrEMBL-Plants: tr|A0A151SHM4|A0A151SHM4_CAJCA Coatomer subunit zeta-2; Found in the gene: LotjaGi3g1v0422300 LjG1.1_chr3 83109913 83111893 -
2 domain predictions
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LotjaGi3g1v0422300.4
n.a. Coatomer subunit zeta; TAIR: AT3G09800.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2; TrEMBL-Plants: tr|A0A151SHM4|A0A151SHM4_CAJCA Coatomer subunit zeta-2; Found in the gene: LotjaGi3g1v0422300 LjG1.1_chr3 83110027 83111893 -
2 domain predictions
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LotjaGi4g1v0117300.1
n.a. AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A151SEJ3|A0A151SEJ3_CAJCA AP-3 complex subunit sigma-2; Found in the gene: LotjaGi4g1v0117300 LjG1.1_chr4 16972788 16987868 +
2 domain predictions
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LotjaGi4g1v0156900.1
n.a. AP-1 complex subunit mu-1; TAIR: AT1G60780.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O22715|AP1M2_ARATH AP-1 complex subunit mu-2; TrEMBL-Plants: tr|I1N1K1|I1N1K1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0156900 LjG1.1_chr4 27295873 27304320 -
2 domain predictions
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LotjaGi4g1v0443200.1
n.a. AP-1 complex subunit sigma-like protein; TAIR: AT2G19790.1 SNARE-like superfamily protein; Swiss-Prot: sp|O82201|AP4S_ARATH AP-4 complex subunit sigma; TrEMBL-Plants: tr|I3S5T8|I3S5T8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0443200 LjG1.1_chr4 81672159 81675121 -
2 domain predictions
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LotjaGi5g1v0006200.1
n.a. AP-2 complex subunit sigma; TAIR: AT1G47830.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q84WL9|AP2S_ARATH AP-2 complex subunit sigma; TrEMBL-Plants: tr|A0A0B2RY87|A0A0B2RY87_GLYSO Phosphotransferase; Found in the gene: LotjaGi5g1v0006200 LjG1.1_chr5 1487645 1492969 -
2 domain predictions
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LotjaGi5g1v0006200.2
n.a. AP-2 complex subunit sigma; TAIR: AT1G47830.1 SNARE-like superfamily protein; Swiss-Prot: sp|O50016|AP2S1_MAIZE AP-2 complex subunit sigma; TrEMBL-Plants: tr|A0A0B2RY87|A0A0B2RY87_GLYSO Phosphotransferase; Found in the gene: LotjaGi5g1v0006200 LjG1.1_chr5 1491176 1492700 -
2 domain predictions
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LotjaGi6g1v0276600.1
n.a. Coatomer subunit zeta; TAIR: AT1G60970.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2; TrEMBL-Plants: tr|I3TAJ3|I3TAJ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0276600 LjG1.1_chr6 59355177 59358189 -
2 domain predictions
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LotjaGi6g1v0276600.2
n.a. Coatomer subunit zeta; TAIR: AT1G60970.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2; TrEMBL-Plants: tr|I3TAJ3|I3TAJ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0276600 LjG1.1_chr6 59355675 59357622 -
2 domain predictions
 –