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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0230000 |
| Transcript ID | LotjaGi2g1v0230000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910; TrEMBL-Plants: tr|V7BLL4|V7BLL4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0230000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68861375..68863811) extracted from Lotus japonicus Gifu genome v1.2.
GTTTAAAATGCAGAGCTGGTGGTTTCAAAAAATAAAATAAAAATGAAGAGGTGATATGTATGAGATGAAGATAAAGAAGG TTAGAGTGAGAGAGAGATAGAAACAATTTTCTTTATGTTGGCCAATTTAACCAAACCCCTTCTTCGACTAAGGAGACACA TTTCAGATCCTCAACCTTCAACACCGCCACTATTTGCTTCCCTCCCACTACGACCATCACTCCTGCAAATCAAGCAAACC CATGCAAACGCCGTCGTTTCGGGCAATGCCCGGTTCATCCTTCACATTCTCTCTCTACTCTCTCTCTCTTCCTTCACTCC CTTCCCACTCGAGTATTGCATCTCCATCTTCAACTCAATCGAGTTCCCCACCGTCTTCGCCTTCAACAACATCATCCGCT GCCACGCCAAGGCAAACTCGCCGCCGTCAGAGTCGATTGCCATTTACTCCGCCATGCTGCGGCGGCGGCGTTTCGTCAAG CCCAACCAGCATACCTTCACCTTCGCTCTCCACGCGTGTACTAAACGCGCCGCCTCGGGATTGGGCTCAGGGGTTCAGGT TCACGCCCATGTGGTCAAGCTTGGTTTCGCGCGCGATGTTTTCGTTCGGAACGCGTTGATTCACTTGTACTGTGAGTGTG GTTCCAGCGTTGAGAGTTTCAAAAGGGTTTTCGAGGAAGAGGAAGATACCCTTTGCAGTGATGTGGTCACGTGGAACTCC GTGTTGGCTGGGGTGGTGAGGAATGGGGAGATTCGTGATGCGGAGAAGGTGTTTGATGAAATGCCTGAGAGAGATGTTGT CTCGTGGAGCACTATGATAATGGGGTATGTCCAGAATGGACTCTTGGAGGATGGGTTGGAGTGTTTTAGTGTGATGAGGG AGAAAGGGATTAGACCCAATGAGGCAGCATTGGTTAGTGTTCTTTCAGCTTCGGCTCAGTTGGGTTTGTTAGAGTGTGGG AGGTTTGTTCATTCCACCATTGAGTCCTTGAAGTTTCGGATAACCGTTCCGGTAGGAACTGCTCTGGTTGACATGTATGC GAAGTGTGGTTGCATTGAGAAGTCGAGGGCGTTGTTTGAATCGATTTCAGGAAAGGATATATGGACATGGAATGTCATGA TTTGTGGGTTGGCTTCGCATGGTCTTGCGAAGGATGCGCTTGCGCTCTTTCACAAGTTCTTAAGTGAGGGTTTTATTCCG GTGAATGTGACTTTTGTTGGAGTCCTAAATGCTTGTAGCATGGGTGGTCTTGTTAGTGAAGGCAAGCGTTACTTTAACTT AATGGTGGATTGTTACGGCATTCAACCTGAGATGGAGCACTACGGGTGCATGGTTGATCTCCTGGCTCGTGCTGGTTTAG TGGATGAAGCCGTTCACTTGATTGAAACGATGACAGTAGAACCGGACCCTGTACTGTGGGCAACACTGCTTGATGCGTGT AAGGTTCATGGGTTTGTGGATATGGGTGAGAAGATTGGAAATAAGTTGATACAGTTGGATCCAATGCATGATGGGCATTA TGTACAGTTAGCTGGAATCTACGCGAAAGCAAGAAAATGGGAAGATGTAGTTAGAGTTCGTAAATTAATGATTGAGAAAG TCAGCAAGAAAGTTGCAGGTTGGAGTTTGGTTGAACTGGAGGGTGGAATTCATCACTTTGTTGCAGGGGACAAAGACCAT GACTGTTCTTCAGACATATACAGAATGCTTGAAACAATAGGACAGGGGATAACTGCAGCTGGTTACCCATCAGTACATCT TACCTGTGTTGCATGATACAGGAGAAGAAAAATGTGATTGTTCACTATCAGTGTACTAGAATGTATGTTATGACAGACAC TAAAAAATTAAAATAAATTTGCAAAATAAAAAGGACGGTACAACTCTCTAAATTAGAAAAGACTCACTTGGTCTAGGTAT GGCAACAGATTTGACAATGAATAGTTTTGCATGATTTCCTCCATTCTCATATAGCTCTTACCCTTCAATTACAAACCCCA GCACCCAACACAACTTCGTCCCCTCTCTTTCATCACCATTCACCTACCATATTACTCCACACCGTTCCTTCTCCCCTACT CTACACACTTGACACCAAAACTAACTCCTTCACTTAACGCACTCAATGCACCTCATCTTCCTGCGCTACCCGCCATCTTC AGCTCTTCACACACACACACGCCAAAGATTCGCCCACTCACAACTTGCATGCATGTAACCAGAATTCTACAAACACTCAG GAAAGGGATTATTAGCCAAAATCTTTAGTCAAAGCATTTGAGATTTCACTTCAGCTAGTAGTCATTAACACAGGTGTCAG TAGGCTTTTGACCTGAATATCCAATATTATGTCCAATGAAATATAGTAAGTCATAGCTTGGGGCTTCCCATGTTCATGAT AATCAGAGTCTGCATAATTGTTTATCAACAATAGAAA
CDS sequence (LotjaGi2g1v0230000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCCAATTTAACCAAACCCCTTCTTCGACTAAGGAGACACATTTCAGATCCTCAACCTTCAACACCGCCACTATT TGCTTCCCTCCCACTACGACCATCACTCCTGCAAATCAAGCAAACCCATGCAAACGCCGTCGTTTCGGGCAATGCCCGGT TCATCCTTCACATTCTCTCTCTACTCTCTCTCTCTTCCTTCACTCCCTTCCCACTCGAGTATTGCATCTCCATCTTCAAC TCAATCGAGTTCCCCACCGTCTTCGCCTTCAACAACATCATCCGCTGCCACGCCAAGGCAAACTCGCCGCCGTCAGAGTC GATTGCCATTTACTCCGCCATGCTGCGGCGGCGGCGTTTCGTCAAGCCCAACCAGCATACCTTCACCTTCGCTCTCCACG CGTGTACTAAACGCGCCGCCTCGGGATTGGGCTCAGGGGTTCAGGTTCACGCCCATGTGGTCAAGCTTGGTTTCGCGCGC GATGTTTTCGTTCGGAACGCGTTGATTCACTTGTACTGTGAGTGTGGTTCCAGCGTTGAGAGTTTCAAAAGGGTTTTCGA GGAAGAGGAAGATACCCTTTGCAGTGATGTGGTCACGTGGAACTCCGTGTTGGCTGGGGTGGTGAGGAATGGGGAGATTC GTGATGCGGAGAAGGTGTTTGATGAAATGCCTGAGAGAGATGTTGTCTCGTGGAGCACTATGATAATGGGGTATGTCCAG AATGGACTCTTGGAGGATGGGTTGGAGTGTTTTAGTGTGATGAGGGAGAAAGGGATTAGACCCAATGAGGCAGCATTGGT TAGTGTTCTTTCAGCTTCGGCTCAGTTGGGTTTGTTAGAGTGTGGGAGGTTTGTTCATTCCACCATTGAGTCCTTGAAGT TTCGGATAACCGTTCCGGTAGGAACTGCTCTGGTTGACATGTATGCGAAGTGTGGTTGCATTGAGAAGTCGAGGGCGTTG TTTGAATCGATTTCAGGAAAGGATATATGGACATGGAATGTCATGATTTGTGGGTTGGCTTCGCATGGTCTTGCGAAGGA TGCGCTTGCGCTCTTTCACAAGTTCTTAAGTGAGGGTTTTATTCCGGTGAATGTGACTTTTGTTGGAGTCCTAAATGCTT GTAGCATGGGTGGTCTTGTTAGTGAAGGCAAGCGTTACTTTAACTTAATGGTGGATTGTTACGGCATTCAACCTGAGATG GAGCACTACGGGTGCATGGTTGATCTCCTGGCTCGTGCTGGTTTAGTGGATGAAGCCGTTCACTTGATTGAAACGATGAC AGTAGAACCGGACCCTGTACTGTGGGCAACACTGCTTGATGCGTGTAAGGTTCATGGGTTTGTGGATATGGGTGAGAAGA TTGGAAATAAGTTGATACAGTTGGATCCAATGCATGATGGGCATTATGTACAGTTAGCTGGAATCTACGCGAAAGCAAGA AAATGGGAAGATGTAGTTAGAGTTCGTAAATTAATGATTGAGAAAGTCAGCAAGAAAGTTGCAGGTTGGAGTTTGGTTGA ACTGGAGGGTGGAATTCATCACTTTGTTGCAGGGGACAAAGACCATGACTGTTCTTCAGACATATACAGAATGCTTGAAA CAATAGGACAGGGGATAACTGCAGCTGGTTACCCATCAGTACATCTTACCTGTGTTGCATGA
Protein sequence (LotjaGi2g1v0230000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLANLTKPLLRLRRHISDPQPSTPPLFASLPLRPSLLQIKQTHANAVVSGNARFILHILSLLSLSSFTPFPLEYCISIFN SIEFPTVFAFNNIIRCHAKANSPPSESIAIYSAMLRRRRFVKPNQHTFTFALHACTKRAASGLGSGVQVHAHVVKLGFAR DVFVRNALIHLYCECGSSVESFKRVFEEEEDTLCSDVVTWNSVLAGVVRNGEIRDAEKVFDEMPERDVVSWSTMIMGYVQ NGLLEDGLECFSVMREKGIRPNEAALVSVLSASAQLGLLECGRFVHSTIESLKFRITVPVGTALVDMYAKCGCIEKSRAL FESISGKDIWTWNVMICGLASHGLAKDALALFHKFLSEGFIPVNVTFVGVLNACSMGGLVSEGKRYFNLMVDCYGIQPEM EHYGCMVDLLARAGLVDEAVHLIETMTVEPDPVLWATLLDACKVHGFVDMGEKIGNKLIQLDPMHDGHYVQLAGIYAKAR KWEDVVRVRKLMIEKVSKKVAGWSLVELEGGIHHFVAGDKDHDCSSDIYRMLETIGQGITAAGYPSVHLTCVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 48 | 188 | 141 | 3.1E-12 | ||
| PANTHER | 80 | 223 | 144 | 5.2E-88 | – | |
| ProSiteProfiles | 86 | 117 | 32 | 6.895 | ||
| ProSiteProfiles | 124 | 160 | 37 | 5.031 | ||
| ProSiteProfiles | 161 | 192 | 32 | 6.752 | ||
| Gene3D | 189 | 296 | 108 | 1.9E-22 | ||
| Pfam | 193 | 224 | 32 | 1.9E-6 | ||
| ProSiteProfiles | 196 | 226 | 31 | 11.027 | ||
| TIGRFAM | 198 | 229 | 32 | 3.8E-7 | ||
| PANTHER | 211 | 287 | 77 | 5.2E-88 | – | |
| ProSiteProfiles | 227 | 261 | 35 | 12.671 | ||
| Pfam | 227 | 271 | 45 | 2.6E-8 | ||
| TIGRFAM | 229 | 263 | 35 | 3.7E-8 | ||
| PANTHER | 288 | 492 | 205 | 5.2E-88 | – | |
| ProSiteProfiles | 297 | 327 | 31 | 5.93 | ||
| Gene3D | 302 | 509 | 208 | 5.3E-35 | ||
| Pfam | 302 | 326 | 25 | 0.25 | ||
| ProSiteProfiles | 328 | 362 | 35 | 11.213 | ||
| TIGRFAM | 331 | 362 | 32 | 9.4E-6 | ||
| Pfam | 331 | 360 | 30 | 1.0E-5 | ||
| ProSiteProfiles | 363 | 398 | 36 | 5.744 | ||
| Pfam | 365 | 392 | 28 | 0.55 | ||
| ProSiteProfiles | 399 | 429 | 31 | 7.289 | ||
| Pfam | 402 | 426 | 25 | 0.023 | ||
| ProSiteProfiles | 431 | 461 | 31 | 5.875 | ||
| ProSiteProfiles | 465 | 495 | 31 | 5.689 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0230000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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