Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0230400 |
| Transcript ID | LotjaGi2g1v0230400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0230400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68990060..68993279) extracted from Lotus japonicus Gifu genome v1.2.
CTGGTCATGAATACGCAACTGAAAATTTCCAAGCTGCTCAATTTGCTGCTCATATAACCTCTTCCTCTTCAAACATTGTA TATTTGTATTGCAGCTGCATTAAATCAACACTCATATCACATGTCATGATGCAAGTAAAAACAAGCACACTTTATGAGTC ACAAATTAACTTGCCCTTTTTGTTCTTTCCCTTGGTGAATTCTGGCCTTATCAACTTCAGCTGCAGCCTTCTTGAGGAGT ACTTTATCTTTTTTCTCTAGCATTTCAAGTGTCTACATAATTGAATGAACAACACATTCAAATGGTCAAATTCTCTCCCT CAAAGTGTAAATTTCTGCTTAAAACACTTGCTATTCAGATCAAGTCTTGCTGCAAGACAATAAATAATGAGCAAAATAGA ACAATATAGTTCATTAAAGTGAAACAATTATGTTCAACATGTATCCACATACCACATAGCATAGCAGAAGCCATATTTAT ATTTTTAGATATAGCTGCACTTTCTGCCCAATCCAACAACTCTTAATTGTAACTTACCCTTCTAATCTAATTGAACTGTT ATCATAAGTTTCTTTTATTTGAACTCTCTTGAATCTCAAATCGGATCTAACTATTACTTCGCGTAACACAGTGAATGAGC CGAGGCAAGGAAGCATACACATGCTGACTCAATTGATAAACACGAACAATTTTCCATCAGAAAGTTATGCGTTCTATTCC ACGTGTCGTCGATGTGAGAGCATCGTGAGCCATCTGTAAGTACTTTGATAAGCAACCTGCGGTCGCGGAGGCATGCCACG TGGTGACCGAAGCCAAACTAACGGAAGATAATGTAAAAAGACCAAATTGTCCAAAGTTTCAATTTGTTGCTCATAAATTC ACTGCTACTTCTGGTTTCTACCTCACTTTTCTGTGAAAAACCCTAGCCTTCAACCCTATCAGCTCTATCCACCGGCGAAG AATGAACCGCCACCGAAGGAGAACCGAGATCCCCACCATCACTCTCCCTCACGATTTGATCGTTCAAATCCTGCTGAGAT TACCAGTTCGATCTCTGATCCGTTTCAAATCCGTCTGCAAATCATGGCTCTCTCTGGTTTCCGATCCCCAATTCGGTGAA TCCCATTTTGACCTAGCTGCTTCTCCAACCCACCGATGCCTCACAGAAGGTTACGCTTGTGACATTAAATCCATAGATGT AGATGCACCATCACTTCACAATGATTCTGCTGTAGTAAACCTCGAATATCCGCGTGCATCACCCCGTCTTCCGTGGAACC CTGTTGAGTTCTTAGGTTCTTGTAGAGGGTTTATACTTGTAGCTTATCAATGTGGTGAAGCTTTTCTGTGGAATCCATCA ACTGGTGTCCATAAAAAATTTGAAGTCATTGAAGAGTTGTACTATAATGTACATGGTTTTGGGTATGATTCATCAAGGGA TGACTATTTGGTTGTTCATTTAGAATTGATTGATTTGGAACACTATCTCAAGGATGATCAGCGCGCTATAGTTGATCATC CTACTCGCATTTCGATTTTTTCCTCGAAAAAAAATGCCTGGTCTTGCCCTGAGGTTGCTAGTGATGTTCAATATGTGGAA TTGGATTCGGATCGTGTTGAATGCCTAGCCGGGTGCTTGTTGAACGAGGCGCTGCATTGGTTGGTTATCTCTTACGAAAC CAAACTTCATGTGATTATTGTCTTTGATTTGGTTGAAAGGAGTTTGTCGGAGATTTCATTGCCGCAAGTTTTAGCCGGGG AATTAGAACATAAAGAATATTGTTTGAGGGTCATGAGGGAATGTCTCTGCCTATGTTACCCAGGTAGCATGACTTCAATG GCTGAGATTTGGATGATGAAAACATATGAAGTGCAGTCATCTTGGACTAAGTTATTTGCTTTTTCGACTTGTAACATTCC CTACAATGTCTTTTATCCAATATGTTTCACCAAACATGGAAGAATTTTTGGATCAAATGGCTATGGGAGATTAATGATAC TTGATGACAAAGGATGGCTGCATGATCTGAGTGCAGCTCGCCCTGAACCCGATAAATATGAATATATTCCAATTCATTGT GGTGCGTTTAGAAGGGAATTAATGCATTGTGGTATGTATAGAGAGAGTTTACTATCACTCCCTAATGACTTTGAGGAAGA AGGTGTTGACTCTGAGGAAGCAAGAGAAGACGAGCAGCTGACGAGTTTCTTTGAGGAAGGAAGTGATGATGACCAGCTGT TGAGTTCCTTGTTGAAGTCAAGTGAAGATGACAAATAGTAACTGCCAATAAGAATTAGTGTATGTAAGTTCTTCAATCCT TTTCACCATTTTATTTATATTACTATTTATTGAGCATAACGAAAAATGAGAAGTCATGTGAAGAGGAAATTATACAAGAA GATGATTCCTTAACCTATCTTGTACTCTCTCCTTCTTAAGTGACTATATTTCTTTCTCCATAAATAAGTGTGACACTTGA AATTGCTAGGAAAGATGAGGTTTGGTGGTGGACTGAATTTACTAATTGATAGGAAATTCATTTGGTGTTGCCTTTGCTTA GAATGATCAAAGACAATTTTGGTGGAAAATCATATAAGAAAAACAAGGTCTTGGGTTAAATATCAGTTCTCAAACTAAGA TCTTGTAGGATTTATAAATTATAATATGGTGACATTTAAAATAAGCTCATCTTTTCCAGCAGGCCATGAAGGGTGCAAAA ATGCTCTACACAGTTATGCTTGATGTCTTGGCTTGCCTTCAAATGATGATATTGCAAGAAGAGAGCTATCATTTGGAAGA GAATGTTACTTATACAATGTTAAGTCATCTCGCTTCAGTAGTGTTTTCTTAGTCGTGGTTTCAGTAAGTTGGAGTCGATA CAGTCTTTCGAATTATATTTTAAAGTATGAGTTAGGAAATCCTAGCAGGAGTTAGTACATGCTATTTAGCAACTTTATTT TTTTCCCTTTTAATATTGTTATTGTAGTTGCAGTTCGTTCCTCTTATTGTCGTTAATATGGTTTTCAGGTTTGATCTCTT CTTATCTGTACTGTAATTAAGTACCTCTTCTACTGAAATAATTCCTGACTTTTGTAAGATATTTGCTGTTACTCATTTTG ACTTGGAAGTTATGGTGATATTGTCAATCTTAATCATCTTGAAACTAATCAAGTTATGACATAGATTAATCTCCCATCAG GTCATTTTAACCACTTGATC
CDS sequence (LotjaGi2g1v0230400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCGCCACCGAAGGAGAACCGAGATCCCCACCATCACTCTCCCTCACGATTTGATCGTTCAAATCCTGCTGAGATT ACCAGTTCGATCTCTGATCCGTTTCAAATCCGTCTGCAAATCATGGCTCTCTCTGGTTTCCGATCCCCAATTCGGTGAAT CCCATTTTGACCTAGCTGCTTCTCCAACCCACCGATGCCTCACAGAAGGTTACGCTTGTGACATTAAATCCATAGATGTA GATGCACCATCACTTCACAATGATTCTGCTGTAGTAAACCTCGAATATCCGCGTGCATCACCCCGTCTTCCGTGGAACCC TGTTGAGTTCTTAGGTTCTTGTAGAGGGTTTATACTTGTAGCTTATCAATGTGGTGAAGCTTTTCTGTGGAATCCATCAA CTGGTGTCCATAAAAAATTTGAAGTCATTGAAGAGTTGTACTATAATGTACATGGTTTTGGGTATGATTCATCAAGGGAT GACTATTTGGTTGTTCATTTAGAATTGATTGATTTGGAACACTATCTCAAGGATGATCAGCGCGCTATAGTTGATCATCC TACTCGCATTTCGATTTTTTCCTCGAAAAAAAATGCCTGGTCTTGCCCTGAGGTTGCTAGTGATGTTCAATATGTGGAAT TGGATTCGGATCGTGTTGAATGCCTAGCCGGGTGCTTGTTGAACGAGGCGCTGCATTGGTTGGTTATCTCTTACGAAACC AAACTTCATGTGATTATTGTCTTTGATTTGGTTGAAAGGAGTTTGTCGGAGATTTCATTGCCGCAAGTTTTAGCCGGGGA ATTAGAACATAAAGAATATTGTTTGAGGGTCATGAGGGAATGTCTCTGCCTATGTTACCCAGGTAGCATGACTTCAATGG CTGAGATTTGGATGATGAAAACATATGAAGTGCAGTCATCTTGGACTAAGTTATTTGCTTTTTCGACTTGTAACATTCCC TACAATGTCTTTTATCCAATATGTTTCACCAAACATGGAAGAATTTTTGGATCAAATGGCTATGGGAGATTAATGATACT TGATGACAAAGGATGGCTGCATGATCTGAGTGCAGCTCGCCCTGAACCCGATAAATATGAATATATTCCAATTCATTGTG GTGCGTTTAGAAGGGAATTAATGCATTGTGGTATGTATAGAGAGAGTTTACTATCACTCCCTAATGACTTTGAGGAAGAA GGTGTTGACTCTGAGGAAGCAAGAGAAGACGAGCAGCTGACGAGTTTCTTTGAGGAAGGAAGTGATGATGACCAGCTGTT GAGTTCCTTGTTGAAGTCAAGTGAAGATGACAAATAG
Protein sequence (LotjaGi2g1v0230400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRHRRRTEIPTITLPHDLIVQILLRLPVRSLIRFKSVCKSWLSLVSDPQFGESHFDLAASPTHRCLTEGYACDIKSIDV DAPSLHNDSAVVNLEYPRASPRLPWNPVEFLGSCRGFILVAYQCGEAFLWNPSTGVHKKFEVIEELYYNVHGFGYDSSRD DYLVVHLELIDLEHYLKDDQRAIVDHPTRISIFSSKKNAWSCPEVASDVQYVELDSDRVECLAGCLLNEALHWLVISYET KLHVIIVFDLVERSLSEISLPQVLAGELEHKEYCLRVMRECLCLCYPGSMTSMAEIWMMKTYEVQSSWTKLFAFSTCNIP YNVFYPICFTKHGRIFGSNGYGRLMILDDKGWLHDLSAARPEPDKYEYIPIHCGAFRRELMHCGMYRESLLSLPNDFEEE GVDSEEAREDEQLTSFFEEGSDDDQLLSSLLKSSEDDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 9 | 59 | 51 | 10.425 | ||
| PANTHER | 12 | 361 | 350 | 5.9E-86 | – | |
| PANTHER | 12 | 361 | 350 | 5.9E-86 | – | |
| Gene3D | 14 | 51 | 38 | 8.8E-10 | – | |
| SUPERFAMILY | 14 | 83 | 70 | 1.14E-14 | ||
| Pfam | 15 | 51 | 37 | 7.8E-8 | ||
| SMART | 15 | 55 | 41 | 9.3E-8 | ||
| TIGRFAM | 113 | 336 | 224 | 2.5E-20 | ||
| Pfam | 226 | 322 | 97 | 1.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0230400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…