Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0233100 |
| Transcript ID | LotjaGi2g1v0233100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytidine deaminase; TAIR: AT2G19570.1 cytidine deaminase 1; Swiss-Prot: sp|O65896|CDA1_ARATH Cytidine deaminase 1; TrEMBL-Plants: tr|A0A1J7HS04|A0A1J7HS04_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0233100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69211049..69213386) extracted from Lotus japonicus Gifu genome v1.2.
ACACATAATCTATAAACTTGGATAACGTCAATTTGGCCTATTCCCACCGCATTTGGGAAGACAGACCAAACATAATAATT TTCTCTTCAAAACCTTTTTTTGAAAAAGTCCGGATTCTAGAGACCATCATAATAATGTTGATTGAAACTCAACTAACTAA TCAGCCAACAAACAAAGGGTTCTACACCAGACAGCCACTCACTGTGATCCTGCCCAAAACCAAAACCACTTTTCCAGGCC AAACTGAACTGATATGATTATCATACACATGGTAGTACATATACACTACCCACCAGTCTAGCATGAACTTGAGATGAGAA CAAACCAACATAAAAAGATTAGGTAGAACCTGAGTTCTCTGGCTTATCAGTCTCCATTGGTTCAGAAGAAGCCAGTGGGG CCTGATTACCGTTATCCCCTCCATTCTCACGAGTGTTGGCATTAGCATTCCCCTAAGGTTGCTGCTGCTCACCACCCTGA GAAGGTGGGGTTGGTGGTGTCTGCGGCGTAGCTGGCTTGGCTGGCCTTGGTTTTGTCATAATCGGCTTGCAGAACCTATC AACAGCCTCAGCTTTCTTTCTTATTTCAGCGGACAAGAGTACAGGATTGACATATTTTGGAAGTGAGTCTTGCTGCTGCT TCTTCTCCCTAAGCCAGTTCTCAGCTTCAACACACTCATTTAAGACCTTCTGTATGTTTTTTCTAACAAACATTTATATA TTTGTGTAATGAAAAATTATGAAAAGCTTTTTATGAACAAAAAAAAATTATAAAAAATTTCAAACATAAATTTTAGATAT TATATAATAACAGTCACCCGTGCATTACACGGGTCATTCAACTAGTATAATAAATAATATAAAATGTCATTAATAACTAA CTAATGCACAAGTCAAGTCAAATTTTACTTTTACATTGTCATTATATTTTTTAATTTTTTTTCTTAAGATGTCATTAATA ATTAGCTAATTGTTGTTTGGGCATATTGCTAGCAATGACTTGACCTCTCCCTTCCTATAAATTGGAGTCACTACCTTCAT CTTCCCTCCCCCACTCTCTTCATCTTCTTTCCCTCCCAAAACTCAGATCCAATTCTCTCTCACAAGAAAAATGGATCACC CCAGATTCATAATCGAAGCTTCAGAAGCAGAATCCATGGCCAAATCTTCAGGCCTCACCCTCCCTCAGCTCCTCCCTTCA CTAGTCCGCTCCTCCCAAAGCCTCGCCCGTGCCCCCATCTCCAAATTCCAGGTAGCAGCGGTGGCCGTCGGCGCCTCCGG CCGCATCTTCATCGGCGTCAACCTCGAGTTCCCCGGCCTCCCCTTCCACCACACCGTCCACGCCGAACAGTTTCTCCTAA CCAACCTCGCCCTCAATGCGGAGACTCAGTTACGGTGGCTCGCCGTCTCCGCCGCGCCATGCGGCCATTGCCGGCAATTT CTGCAAGAAATTCGCGACGCTCCGAATATCGAACTCCTCATTACTGACAACGATGACCCGAGTTTCACCCCTCTCTCGCA CTTCCTCACTCACCCTTTTGGACCCCATGACCTTCTCCCCAAAGGGGTGCCCCTTCTCTTAGAGCCTCGTCACAACAACC TCACTTTTAGCGGCGATTATTCTCCTTGTTCTGACAATGTCCTCTCCAATGGCGATACACCCATGATTTCTCAGAAGCTG AAGTTTGCGGCGTTGGAAGCTGCTAACGCTTCCCATGCACCTTACAGTGGTTGTCCTTCTGGGGTGGCTCTGTTGGATTC TCAGGGGAAGATTTACAGAGGGTCTTACATGGAGTCTGCGGCGTATAACCCCAGCCTTGGACCCCTTCAGACTGCTCTGA TTGCCTATGTAGCTGCCGGAGCTGCTGATTATGACGGTGTTGTCGCCGCCGTGTTGGTGGAGAAGGATGGGGCGGTGGTT AGACAGGAGACCACTGCAAGGTTGCTGCTGCAAGAAATCTCCCCTCAGTGCCAGTTCAAGGCTTTCCTTTGTACTTCAGC TGATTGAATTGAAATTTGTGAGAAATGGATGTTGAAGTTATGATCATGGCCTTGGATATGGTCATATGGTGGTGTGTGAT GAATGATGATCCCTTTCTTATGCATTTCTTTGTGGTTCAAATGAGATGTTTGATTTATCTTGTATATTAATATATCATGT TATATATTAGTATATTCTATTGAATGTCATGGTCTCTCTTTTATTTTTATCTTGTTGGACTTGAAAACTTGAACTCAGGC AATCAGTTCACATGGTCTGAAATTTGACATATATTAATTTCCCAGTTAACAACTCTTACTTGGTTTATCTGTTTGGAAAA CTTGATAACCATTCTCAT
CDS sequence (LotjaGi2g1v0233100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCACCCCAGATTCATAATCGAAGCTTCAGAAGCAGAATCCATGGCCAAATCTTCAGGCCTCACCCTCCCTCAGCT CCTCCCTTCACTAGTCCGCTCCTCCCAAAGCCTCGCCCGTGCCCCCATCTCCAAATTCCAGGTAGCAGCGGTGGCCGTCG GCGCCTCCGGCCGCATCTTCATCGGCGTCAACCTCGAGTTCCCCGGCCTCCCCTTCCACCACACCGTCCACGCCGAACAG TTTCTCCTAACCAACCTCGCCCTCAATGCGGAGACTCAGTTACGGTGGCTCGCCGTCTCCGCCGCGCCATGCGGCCATTG CCGGCAATTTCTGCAAGAAATTCGCGACGCTCCGAATATCGAACTCCTCATTACTGACAACGATGACCCGAGTTTCACCC CTCTCTCGCACTTCCTCACTCACCCTTTTGGACCCCATGACCTTCTCCCCAAAGGGGTGCCCCTTCTCTTAGAGCCTCGT CACAACAACCTCACTTTTAGCGGCGATTATTCTCCTTGTTCTGACAATGTCCTCTCCAATGGCGATACACCCATGATTTC TCAGAAGCTGAAGTTTGCGGCGTTGGAAGCTGCTAACGCTTCCCATGCACCTTACAGTGGTTGTCCTTCTGGGGTGGCTC TGTTGGATTCTCAGGGGAAGATTTACAGAGGGTCTTACATGGAGTCTGCGGCGTATAACCCCAGCCTTGGACCCCTTCAG ACTGCTCTGATTGCCTATGTAGCTGCCGGAGCTGCTGATTATGACGGTGTTGTCGCCGCCGTGTTGGTGGAGAAGGATGG GGCGGTGGTTAGACAGGAGACCACTGCAAGGTTGCTGCTGCAAGAAATCTCCCCTCAGTGCCAGTTCAAGGCTTTCCTTT GTACTTCAGCTGATTGA
Protein sequence (LotjaGi2g1v0233100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHPRFIIEASEAESMAKSSGLTLPQLLPSLVRSSQSLARAPISKFQVAAVAVGASGRIFIGVNLEFPGLPFHHTVHAEQ FLLTNLALNAETQLRWLAVSAAPCGHCRQFLQEIRDAPNIELLITDNDDPSFTPLSHFLTHPFGPHDLLPKGVPLLLEPR HNNLTFSGDYSPCSDNVLSNGDTPMISQKLKFAALEAANASHAPYSGCPSGVALLDSQGKIYRGSYMESAAYNPSLGPLQ TALIAYVAAGAADYDGVVAAVLVEKDGAVVRQETTARLLLQEISPQCQFKAFLCTSAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 297 | 297 | 9.4E-96 | – | |
| PANTHER | 5 | 288 | 284 | 4.6E-99 | – | |
| TIGRFAM | 5 | 294 | 290 | 4.0E-106 | ||
| Gene3D | 5 | 152 | 148 | 2.2E-34 | – | |
| PANTHER | 5 | 288 | 284 | 4.6E-99 | – | |
| SUPERFAMILY | 10 | 118 | 109 | 6.52E-28 | ||
| ProSiteProfiles | 23 | 146 | 124 | 19.29 | ||
| Pfam | 39 | 115 | 77 | 9.7E-12 | ||
| CDD | 39 | 133 | 95 | 6.87598E-22 | – | |
| ProSitePatterns | 77 | 111 | 35 | - | ||
| SUPERFAMILY | 132 | 284 | 153 | 1.64E-27 | ||
| Pfam | 135 | 277 | 143 | 8.9E-48 | ||
| Gene3D | 182 | 294 | 113 | 1.5E-28 | – | |
| ProSiteProfiles | 185 | 298 | 114 | 20.01 | ||
| CDD | 193 | 269 | 77 | 1.30862E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Cytidine deaminase activity | Catalysis of the reaction: cytidine + H2O = uridine + NH3. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Cytidine deamination | The removal of amino group in the presence of water. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0233100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…