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LotjaGi2g1v0233700.1

Overview

Field Value
Gene ID LotjaGi2g1v0233700
Transcript ID LotjaGi2g1v0233700.1
Lotus japonicus genome version Gifu v1.2
Description Protein OSB3, chloroplastic/mitochondrial; TAIR: AT5G44785.2 organellar single-stranded DNA binding protein 3; Swiss-Prot: sp|Q8GWJ4|OSB3_ARATH Protein OSB3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0L9VGU0|A0A0L9VGU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0233700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:69285917..69292505) extracted from Lotus japonicus Gifu genome v1.2.

AGAAGAAATTTTCTTGTTATTTGATATATAATCTGAGTTTAAATATATATCCTCAAAGTAAACATATTTAAGACAAAATA GAAAAATAAATCCAATGTAAATCGATTTAACTTCAATTTAATCTCTTTGAGGGTTGAGTCCAGGGTTTTAGAAATGAATT CTCTGCGGCGAGCGTTGGTGGCGTCAAGGGAGAATCTCCTCCACCTCCACCTCCACCGTCGCCGATGCTACTCCTCCACT CGCCCCGGAAGAAAACCCAAACCCCTCTCTCCAAAACCCACGGAGATTCCCTTCCAGCCCAAGCTCGCCAACGCCGTCAA CCTCATCGGCCAGGTTCATTCGCCGCTTCAGTTCCAAACCTCCCCCGACGGAAACCCTTGGGCTTCCACCGTTCTCACGC GCCAAGACTCTCCGTCTTCCCCTTTCCTCTGGTACCATTCATTGGTTTTGGTTTTGGTTTTGGTTAACTCTGGTTTTTAC TCAATGTTTGAAATTGTGTTGTTTTCTTTGTTTGTTTGTTTGTTGTGTAAGGATTCCAGTTATATTTGAGGGTGATTTGG CTCACGCCGCGGTTTCGCATCTCAAACCGAATGATGTTGTTCATATAGCTGGACAGCTCAGTACTGATCCTCCGCACCTG AATGGCCATGCCCCAGCTCAAAGTAATTTTCAGGTATGTATAGTTTGTGTTTACATATTACATGATTTAATCGCTTTCCT ACGGCGTGTAATGTATGAAGCATTGGATTTTTGAATGAGTGGCTCTATGTTGTGATGTTAGGAAATGGACATGAGATTCC CCAAATTAGTGCCAATGTGTATTAGACTATCACTAATTTCAAGTTAGTCCCCAAGTTTTTGTTTTCAAGGTATTTAAATG CACGGTATTTTGGAGCCCGTTTGATACCTGTTAGAAAGTATGACAGTGAACAAAGAGTGCTGCGGGATGTGTTATTTTTT CGATTTTCATACTTTCTAATGTGTATCCAAAGTCCAAACTGACTCTTGGTCAGGAAAAAGATTGGTAGACATCCTGATGG GGTGGATGTATACAGTATACACGTTTAATAGGGAGATAGGAAAAGAAAAGAGAAAAGTGAAATGATGTGACTTAAAGGGT GAGATATGCAGAAAAAAGGGCGAAGGGGAGGTGAAGATAATCTGCGGGTGTTCAAAAAACCAGGATTATGTTTGGTGATC CTTGTGGTGCTGGTCACTTTCATCCCTGTGACACTAATATGATCGGCATTTAAATGGTTTTGAAGTCCAAAGACCAAAAA TGATGCTACTTCAGTCCATTGACCAACTTGGAAGTTTGCAATAAATGCTATTGTTATGGGACTAATTTGGGAGTCTTCTT GGCAATGGTCTTTGATATTAAATGAATTTCTTTTGACTTTACATTTATTCTACCTCAACCCTCAACCATATTTTCTCCTC GCATCGTTTTAATAAGAAACAAGAAATTTTTATATATACGCTTTGCTTATATGTTTTTCTCTTGTAGTGGTGTCTTGTTT TGTGTGTGTTGTGTGAGAGCTCTCAAGTTTAGTAGGTGAAATTTACATATTTGTGTTAACATATTAGGTTATGGTGCAAA GCCTCAACTTTGTCCAAGATTATCCCCAAGTGAAGAATATATCTGAAACACCAAAGCAAAAAGTAGTTTCTGTTTCTGGT AAGTCCTTTCATATGATTTAGCATCACTTTATTTTTTACATTGTCTTCTGAATAATTTCATTATATATTTTTGGAATGGA AAATCAGGCAATAGAATCATAAGAAACAGTAGTGTTATATAGATATAATTTATTCTCATGCATCCATAAACAATTGGGAC TAAATGGATGTGCATATATTTCTTGATAACTTTCTTTTCATATTTTTCCAATAGGGATTTTTTTTTTTATAATAGAAGAA ATTTTATTAGAAGAAAATGAAGGGATGTACATCTATACGTATGATATTATTTTCTCCAAAATAGAACCAGAAATGAACCT CAGGGAGCGAGTTAATATGAAGCAAGATAGCCAGTGTTCATGATATTCAATGAAAGGGAAAATTCTGTAGCAGTGTGATG CTTTGCCTGTAACCCTATAACAGCAGCTGATTTGATTAGTTTTTTTAGTAATATTTCATTTCTATCATATTAGAAACCGA GGAGCATGGCGTCAATCCATGGACGAAGTCTATCCATTCCAAGCAAAGTGAGGAACATGACATTGACAAATCTTGGAAGG ATCTCCTTAATAACCCCAGTGAATGGTGGGATGTTCGATCAGCAAAGGTTAGGAAATTTCTCCTTGATTCATATCTTCCA TTTTGCCCATCTACTATTTGGCAATGATGCTTCCTTCAAATTGTTTTCTGAAATTTATTGCAACTTAATGTAGGAGAATC CAAAAGGTGCAGCTTTTGAAAGAAAGACAAATCGTGAATTGGTCTTTATCGATAGCTCAACTCCCAAATGGCTCCAAGAG AAATTAGAGTCAATGACAATTGATTTGAAACCTGAACTGAAACACACAATAAGTATGCATGTGTTAGCTATATCTCTTCA CTCCTATTTTATAGTTATTGGCTAATTGGTTAGTTTGAATATTCAGAAAATCTTGATTTTGTATTATTTTACAGCCAGTG CAAAGAAAGACCCTGGCTCTTTGTTGAGTTCTTGGAGAGACCTTCTGAATAATCCTAAGCAGTGGTTTGATTTCCGTGAT AGCAAACTCAATGGATTGGTAATGATTGATGATTACTTTGGGTATCTTTTTCTCTTTGTCTGATTTTCTTGGGTGATGTT TTATATTTCTATCTACTTAGTAGGTGAACCCAAGGTACCCTGACTTCAAGTGCAAGGATGGAAGCACTGCCCTCTGGCTT GACAGGGCTCCAAAGTGGTTTTTATCTGAACTTAAAGGACTCAAAGTTGACATTCCAGTTGTTAAAACCAAAAAAGAAAA AGATGGTAAAGGTATGTGTGAAAAACTTCTTTGATCATAACGGCCTTCCTATGCATCATAATCATAATTGTGATTAGGTT CATAAGACCTTCAAAACAGATTAATATTTTGATTTTGTTGCTTGGAGATGCTCTCCATTTTTATTTTTGATCAAGGTCTT GTGTTTGTTTGGGTTCTGTTTTCAAGATTCGTCACATCCTATGGTCATTTCTTTGTCTTTCTATTTTTGTTTTATTACCA TATTATGTTTTAAAGTACATTTGCCCCCACTTGGTTAGGTGATCAGTCCTGGAATGATTTGGTGGAAAATCCAGCTAAAT GGTGGGATAATAGATTAAATAAGGTGACCCCATTTTCTGATTTGTCCTTGGGGTTTTAAATATCTACGAGTTTATTTCCC ACTTAATTACATTTTGTATATTGAGTTAGTGGTTCATTTTGATCATCAGAGGAATGTAAAAGCTCCTGATTTCAAGCACA AAGAAACCGGTGAAGGACTGTGGGTCGATGCTTCGCCAAATTGGGTGTTACCAAAACTGCCACCCGTGAAGCTTGAACAA AGTGTACCTACTAGCAGCAAACAAACACTGGTTTCATGAACATCGGAAGAGAAGCAGAGAATGAAGTCATTTACCAAGTT GAATGAATCTTTCACTCATTCTCTCTGTTTCACCTCCATGTATTTTAGTTATTGCCTTCTTAAAGTTCTTTTGTTCTGAT ATCTATAGATCTCAGTATCTTTTAATTGCTCGGCTAACTGAGCATTATTATAGGATTTTCCCAGACAAGTTATATTAGTT GCTTCTCATGTACAAATGCGATTTTTGTCAGAATTGTCGCTACTTATGTGCATTCTCATCCCACATTTTTCACTCATGAG GAAAAATATATTTGCTCAATTTTTTTGATGGATTTCAAGTTCCACTCATGCGGTTTATGGCTCTTTTTCTTTGATATTTT ATTTTAAATACAAGCCATTTGGTGCAATTAAGTAAGTTTTGCTCCAAAGAGAAAATTCCAAACCTTATCGAATTACTGTG ATTCGAAGTTGTATAGCTGTTATGCCCATACCAGTCAATACCTTTTAGGAACTCAGGAAGCATCCTGATCATACATGTAG GAAGCCTTATTGGTGTATGTTTGGAAATCCTTTTATAATTGAGCTGGGGAAAAGCTTCAATGAGTAGTTTCTGGCTGAAA CATGATCTACTGGTAAAGAGTGTAAGAGTGTTGAAACTTGGAAATAATACATAGGAAACATTTCTTGTGAAACTAAATAA AGTATTCGAGCTTGACTAAATGTTAGAATTACAACAAAATAAAGGGAAGAAAAGTCAGCAAATATCTTCCTTTATGAGGC TTGATAGGGTAGAAAAGGTTGCACTCTATCTATGGCTTGTGAAAAACTCTTCCAGCCAGCAAAGCAGCTTCCATGACTAC CTTAATAACTTCAATGACATCATCTGCTTGGCACGTGTTTCCCTTGAATGTAGGCGCCCCCTTGTTCTTAAAATTGTCCA TACAGTCAATGAATGTTTGGCTGCACTGTTGGCTTAGGTAGTCATCTGCATAAAACCACCATTAATCAGTACTTCCTACC ATTTCTTCAGTCCCTATTTACTAAGAATATTCTTTGAGTGAAGAAGAAGGGATTCAATAAGGATCATAATCAAGCCAATT ATATAAGTTGGCTAGGATATTGCTCTGTTACTAATTTATCCTATTCAGATTAAGTAATTAGATGAAGGGTCTATTTATGT GCATAAACTTTATTATAGACACTGAACATATATATACAGGTAAAAAGTCATCAAGTAAAAAATCCCTATCAGCCAACTAC CATCTTTATTTTATATCACTACCATCTTTATTTTATAAGATATAGTAATTCAAGTGTTTGAACTGGAAAGGATTCCATGA GGGCCTGGACTCAACTGCTCTCGAACATTGATTCGGCGCATATATCATATATGATACTGCTGACACCTTTAATGCATGTT TGCTTTCGCTTCTAAAATCCTCATCACTTTTAATTCTCAGCTTCTCACTCTTTTAGACCTAATAACTCTCAAAGCATGAG CTTGAGCAGGACAAAGTGGCATTTGTTAACTTAACAGCAAATATTCCCTCTAATTATAAGATCCTATAGAATCATATTTG GTGTCCTTTTATATAAGATCCCGTACTAAATTCTAAAAATATTTATTATCATTTTCTAAGTATATCCATTTATTTATTAT ACTTTTCTAATTCTAAAATTTAGATTAGCATTAAAAATTAATGTTTTTCCACACTACTCAATATATTAATTAAGGATAAA TGTGAAAAATTGTATAAATTTTTTTAAAACTAATATATTAATTAACATCATTACATATTTTCTTAAAATCCGGAATTGTG TTATGAAGAGCTTATATCTATGGATGGATGGAGGGATTTATACTTACCGACTAAATTTCCTCTCATATCAACTTAAATGG TTTATTTTATCAGAGCTAATTTAGTGAAAAAATTAAATGATATGCTTCATTACTAGGACACTTGTCATGAAATTTCAAAG CTCAGCTTTATGATAATACCAGACTTGTAAAAATAACTACCAATATGACATTAAAAAAATATAATTGAAGATCTAGTTTC TGAAGGGACTTGATAATCAATCACTTACATAGTGTCGGATCCGATAATCTGATATTGATACTGGAATTATTCAATTAAAT ATAGAATCCAAGTCATAAACTCATAATGTAAGATGTTTCAATTAAGAAGCTAGTAATTGATCACTCACTGTTTTTGTTTG TCACACATTGATCATGCTTCATGCAACAAGCATCAAGGCCATCACAAGGTTTTTCCCCAGGGCATCCACTATACAGAAGC CCACAGTACTTGCCATATCTCAATAATGGTGGCACTGTGTCACTCCAAAATTAGATAGTTACAAAAACAATTTGAAACTT AACCCAATTAATAAAATTTTCAAAAGAAGAACAAAAGTTAAAAAAATTAATTGAATTAAACAAGTACCTGAGCAGAAGCT TGATTCACATTGTCTACTGCACTCTTTGCTCTGCAGATGAATGAAAGAGTAATAAACTAATATAAAAAAATAAGACAGAA ATTAGGAAAATTAATGTGTTTGGAATTAGATAGTTTTAGCAAGAAGCTTACAACAGAAACAGCTACTCCAGTGGTTTCAG CTCCTATGTTCAGAGCACAGATAGGAATGGTTAAGAAATTGAAGGCAAATGTGCAAAAAACGAGAAGAGAGTACTTGAGT GACTGGGTTGGAATTGGAACCATTTTTTTGTGTGTGAGGAAAGACAAGATAGAAAAAGTGAGATTAATTGAAGTTTGTGA AGCTTGGTTTTGCTCAAAGACTTTATTTATTGGATGAAAAAGAAAAGACACAGTGAGAGATTTCAGATTTTCAGAACAAA GTTAAAATACTAGGCAGGGAGGCACAGCTAAGGAAGAAAGAGTGGAGGGTTTGGTGGTTTGTTTTGTAGTGTCTCGTGAC TGTATTGTTGTCACTATTTTTCTTATTTTAAACTATTTTGTTTTTTAAGGATGACAATGGCTAATTCTCTTGCTAGGAAT GTATTAAGCGATAAATAACTGCTAACAAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0233700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATTCTCTGCGGCGAGCGTTGGTGGCGTCAAGGGAGAATCTCCTCCACCTCCACCTCCACCGTCGCCGATGCTACTC CTCCACTCGCCCCGGAAGAAAACCCAAACCCCTCTCTCCAAAACCCACGGAGATTCCCTTCCAGCCCAAGCTCGCCAACG CCGTCAACCTCATCGGCCAGGTTCATTCGCCGCTTCAGTTCCAAACCTCCCCCGACGGAAACCCTTGGGCTTCCACCGTT CTCACGCGCCAAGACTCTCCGTCTTCCCCTTTCCTCTGGATTCCAGTTATATTTGAGGGTGATTTGGCTCACGCCGCGGT TTCGCATCTCAAACCGAATGATGTTGTTCATATAGCTGGACAGCTCAGTACTGATCCTCCGCACCTGAATGGCCATGCCC CAGCTCAAAGTAATTTTCAGGTTATGGTGCAAAGCCTCAACTTTGTCCAAGATTATCCCCAAGTGAAGAATATATCTGAA ACACCAAAGCAAAAAGTAGTTTCTGTTTCTGAAACCGAGGAGCATGGCGTCAATCCATGGACGAAGTCTATCCATTCCAA GCAAAGTGAGGAACATGACATTGACAAATCTTGGAAGGATCTCCTTAATAACCCCAGTGAATGGTGGGATGTTCGATCAG CAAAGGAGAATCCAAAAGGTGCAGCTTTTGAAAGAAAGACAAATCGTGAATTGGTCTTTATCGATAGCTCAACTCCCAAA TGGCTCCAAGAGAAATTAGAGTCAATGACAATTGATTTGAAACCTGAACTGAAACACACAATAACCAGTGCAAAGAAAGA CCCTGGCTCTTTGTTGAGTTCTTGGAGAGACCTTCTGAATAATCCTAAGCAGTGGTTTGATTTCCGTGATAGCAAACTCA ATGGATTGGTGAACCCAAGGTACCCTGACTTCAAGTGCAAGGATGGAAGCACTGCCCTCTGGCTTGACAGGGCTCCAAAG TGGTTTTTATCTGAACTTAAAGGACTCAAAGTTGACATTCCAGTTGTTAAAACCAAAAAAGAAAAAGATGGTAAAGGTGA TCAGTCCTGGAATGATTTGGTGGAAAATCCAGCTAAATGGTGGGATAATAGATTAAATAAGAGGAATGTAAAAGCTCCTG ATTTCAAGCACAAAGAAACCGGTGAAGGACTGTGGGTCGATGCTTCGCCAAATTGGGTGTTACCAAAACTGCCACCCGTG AAGCTTGAACAAAGTGTACCTACTAGCAGCAAACAAACACTGGTTTCATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0233700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNSLRRALVASRENLLHLHLHRRRCYSSTRPGRKPKPLSPKPTEIPFQPKLANAVNLIGQVHSPLQFQTSPDGNPWASTV LTRQDSPSSPFLWIPVIFEGDLAHAAVSHLKPNDVVHIAGQLSTDPPHLNGHAPAQSNFQVMVQSLNFVQDYPQVKNISE TPKQKVVSVSETEEHGVNPWTKSIHSKQSEEHDIDKSWKDLLNNPSEWWDVRSAKENPKGAAFERKTNRELVFIDSSTPK WLQEKLESMTIDLKPELKHTITSAKKDPGSLLSSWRDLLNNPKQWFDFRDSKLNGLVNPRYPDFKCKDGSTALWLDRAPK WFLSELKGLKVDIPVVKTKKEKDGKGDQSWNDLVENPAKWWDNRLNKRNVKAPDFKHKETGEGLWVDASPNWVLPKLPPV KLEQSVPTSSKQTLVS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
26 45 20 - –
PANTHER
PTHR10302:SF8
35 163 129 2.3E-123 –
PANTHER
PTHR10302
35 163 129 2.3E-123
IPR011344
ProSiteProfiles
PS50935
51 150 100 13.317
IPR000424
SUPERFAMILY
SSF50249
53 149 97 3.08E-8
IPR012340
PANTHER
PTHR10302:SF8
185 256 72 2.3E-123 –
PANTHER
PTHR10302
185 256 72 2.3E-123
IPR011344
PANTHER
PTHR10302:SF8
263 406 144 2.3E-123 –
PANTHER
PTHR10302
263 406 144 2.3E-123
IPR011344

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003697
Molecular function Single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
Subterm of
GO:0006260
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0233700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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