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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000424
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.455s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0056329.1
n.a. PREDICTED: protein OSB2, chloroplastic-like [Cicer arietinum] gi|502115197|ref|XP_004495147.1| chr0 18295132 18297124 +
3 domain predictions
1 GO term
Lj0g3v0162269.1
n.a. PREDICTED: protein OSB1, mitochondrial-like [Glycine max] gi|356553917|ref|XP_003545297.1| chr0 76502386 76504770 +
3 domain predictions
1 GO term
Lj2g3v0914150.1
n.a. PREDICTED: protein OSB2, chloroplastic-like [Cicer arietinum] gi|502164271|ref|XP_004513105.1| chr2 14044936 14048673 +
2 domain predictions
1 GO term
Lj4g3v1784860.1
n.a. PREDICTED: single-stranded DNA-binding protein, mitochondrial-like [Cicer arietinum] gi|502122587|ref|XP_004497818.1| chr4 25224740 25227621 +
3 domain predictions
1 GO term
Lj5g3v0197030.1
n.a. PREDICTED: protein OSB2, chloroplastic-like [Cicer arietinum] gi|502164271|ref|XP_004513105.1| chr5 1855724 1859461 -
2 domain predictions
1 GO term
Lj5g3v1015150.1
n.a. PREDICTED: protein OSB2, chloroplastic-like [Cicer arietinum] gi|502115197|ref|XP_004495147.1| chr5 16589364 16591637 +
3 domain predictions
1 GO term
LotjaGi2g1v0233700.1
n.a. Protein OSB3, chloroplastic/mitochondrial; TAIR: AT5G44785.2 organellar single-stranded DNA binding protein 3; Swiss-Prot: sp|Q8GWJ4|OSB3_ARATH Protein OSB3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0L9VGU0|A0A0L9VGU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0233700 LjG1.1_chr2 69285917 69292505 +
2 domain predictions
1 GO term
LotjaGi4g1v0262500.1
n.a. Single-stranded DNA-binding protein; TAIR: AT3G18580.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial; TrEMBL-Plants: tr|V7CAJ9|V7CAJ9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0262500 LjG1.1_chr4 62556650 62560082 +
4 domain predictions
1 GO term
LotjaGi5g1v0023300.1
n.a. Protein OSB1, mitochondrial; TAIR: AT1G47720.1 Primosome PriB/single-strand DNA-binding protein; Swiss-Prot: sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial; TrEMBL-Plants: tr|A0A151RMN9|A0A151RMN9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0023300 LjG1.1_chr5 4119223 4124188 -
3 domain predictions
1 GO term
LotjaGi5g1v0023300.2
n.a. Protein OSB1, mitochondrial; TAIR: AT1G47720.1 Primosome PriB/single-strand DNA-binding protein; Swiss-Prot: sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial; TrEMBL-Plants: tr|A0A151RMN9|A0A151RMN9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0023300 LjG1.1_chr5 4119223 4124252 -
3 domain predictions
1 GO term
LotjaGi5g1v0174600.1
n.a. Single-stranded DNA-binding protein; TAIR: AT4G20010.2 plastid transcriptionally active 9; Swiss-Prot: sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic; TrEMBL-Plants: tr|A0A0R0KWQ4|A0A0R0KWQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0174600 LjG1.1_chr5 44574700 44577442 +
4 domain predictions
1 GO term
LotjaGi5g1v0174600.2
n.a. Single-stranded DNA-binding protein; TAIR: AT1G47720.1 Primosome PriB/single-strand DNA-binding protein; Swiss-Prot: sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial; TrEMBL-Plants: tr|I1JF51|I1JF51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0174600 LjG1.1_chr5 44574700 44577442 +
4 domain predictions
1 GO term
LotjaGi5g1v0227500.1
n.a. Single-stranded DNA-binding protein; TAIR: AT4G11060.1 mitochondrially targeted single-stranded DNA binding protein; Swiss-Prot: sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial; TrEMBL-Plants: tr|I3SK50|I3SK50_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0227500 LjG1.1_chr5 53482601 53485664 +
4 domain predictions
1 GO term