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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0242000 |
| Transcript ID | LotjaGi2g1v0242000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G40400.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400; TrEMBL-Plants: tr|I1K1K5|I1K1K5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0242000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70465356..70467219) extracted from Lotus japonicus Gifu genome v1.2.
ATCATTCTCCAACACAACCTTCTCACAGAAAAAATCACCTTCCTTTTCATCTTCTTCTTCTTCTTCCCTAGTCACTATAC ATGATTCTCAATCCAAACCCATTTCAAGTCCCTTTTACAATCTCCTCCCACCTACCCAGAACCCCCATAACATAGTAAAC CTCATTTCTTCACTCCTCAAACAGAAAAGTTTCCATCTTTCCCTTTTTCAAAATGACATCAAAGGCATTCTCCCTCACAT GGGTACCCATGAAATTTCTAGGGTTTTGCTCAGGTGCCAATCTGATCACTCTTCAGCTCTCACATTTTTCAATTGGGTTA AGAATGATTTGGGTGTTAAACCAGCTGTGCAGAACTATTGTGTAATTGTTCACATACTTGCTTGGTCTAGAGTGTTCTCT AAGGCCATGAAGTTGTTGTGTGAATTGATACACCTGGTTGAGGTTGAGGGTGTTTTTTCAAATGTGGATATTTATCAGAA TTTGGTTTTGAGTACTGAGGATTGTAATTGGAATCCTGCAATATTTGATATGCTTATCAAGGCTTATGTGAAGGTTGGTA TGGTTGAGAAGGGTTTGGTAACTTTTAGGAAGAATATTGAGGCTTGTTTTATTCCCAATGTGGTAGCTTGCAATTGTTTG CTGAGTGGTTTGTCTAAGTTTAATTATATTGATCAGTGCTGGGAAGTTTATGAAGAGATGGGAAGACTTGGAATTCACAG GAATGCTTTTACTTTCAACATTTTAACCAATGTTTTGTGTAAATACGGAGATACGGATAAGGTTAATGGATTCTTGGAGA AAATGGAGGAAGAAGGATTTGAACCTGACTTGGTGACATATAACACACTCATTAATAGCTATTGTAAGAAAAGAAGGTTG GAGGATGCGTTTTATTTATACAAGATCATGTACATTAGAGGTGTGACGCCTAATTTGATTTCACACTCAGCCTTGATGAA TGGTCTTTGTGAAGAAGGGAAAATCAAGGAGGCTCATCAACTTTTTAACCAGATGGTTCAGAGAGGGATAGATCCAGATG TTGTGTCGTATAATACTCTTATATCTGGTTATTGCAGAGAAGGTAAGGTGCAGATGTCTAGATCGCTATTGCGTGAAATG ATAGGAAGTGGAATTCGTCCTGACAGTGTCACTTGTAGGCTTATTGTTCAAGGATATGCAAGGGATGGAAAGCTACTCTC AGCCTTGAATTTGGTTGTGGAGCTTCAGAAATTTGGAATTAAGATTCCTGAAAATTTATATGATTATCTCATAGTTGCAT TGTGCAAAGAAGGTCGACCATTTGCTGCTAGAAGTTTTCTGATAAGGATATCTCAGGATGGCTATGTGCCTGAAATCAGT ACTTTCAATAGCCTGGTTGAGTCTCTATGTAAATTCAATAATGTGGAAGAGGCACTAATTGTGAAATCTGAGATGCTAAA GAATAGTATGAGGCTGAGTCTCACTGCCTATAGAGCTATTATAAGCGGCTTGTGTAGAGTAAACAGGACTCTGGAAGCTG AAGCCTTGTTGGAGGAAATGGTTAGCTTAGGTATTCTACCTGATCTAGAAACTAAGAGGGCATTAATAAATGGATATTGT AAAGAAAATAATGTTGATAGAGCTGAGTCATTATTGAAATTCTTTGCCAAGGAGTTTCAACTTTACGACACTGAAAGCTA CAATTCAGTTGTTAAAGTCTTTTGTGAGGTTGGTGATGTGGCAGAGCTGATGGAGCTTCAGGATAGGCTACTCAAGGTGG GGTATGTTCCAAATAGTTTAACATGCAAGTACGTGATTTGCGGATTGCAGAAAGTTATGGAACTAGATGATGAGATATTG AGACACAACATGCTAGAACCTTGA
CDS sequence (LotjaGi2g1v0242000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTACCCATGAAATTTCTAGGGTTTTGCTCAGGTGCCAATCTGATCACTCTTCAGCTCTCACATTTTTCAATTGGGT TAAGAATGATTTGGGTGTTAAACCAGCTGTGCAGAACTATTGTGTAATTGTTCACATACTTGCTTGGTCTAGAGTGTTCT CTAAGGCCATGAAGTTGTTGTGTGAATTGATACACCTGGTTGAGGTTGAGGGTGTTTTTTCAAATGTGGATATTTATCAG AATTTGGTTTTGAGTACTGAGGATTGTAATTGGAATCCTGCAATATTTGATATGCTTATCAAGGCTTATGTGAAGGTTGG TATGGTTGAGAAGGGTTTGGTAACTTTTAGGAAGAATATTGAGGCTTGTTTTATTCCCAATGTGGTAGCTTGCAATTGTT TGCTGAGTGGTTTGTCTAAGTTTAATTATATTGATCAGTGCTGGGAAGTTTATGAAGAGATGGGAAGACTTGGAATTCAC AGGAATGCTTTTACTTTCAACATTTTAACCAATGTTTTGTGTAAATACGGAGATACGGATAAGGTTAATGGATTCTTGGA GAAAATGGAGGAAGAAGGATTTGAACCTGACTTGGTGACATATAACACACTCATTAATAGCTATTGTAAGAAAAGAAGGT TGGAGGATGCGTTTTATTTATACAAGATCATGTACATTAGAGGTGTGACGCCTAATTTGATTTCACACTCAGCCTTGATG AATGGTCTTTGTGAAGAAGGGAAAATCAAGGAGGCTCATCAACTTTTTAACCAGATGGTTCAGAGAGGGATAGATCCAGA TGTTGTGTCGTATAATACTCTTATATCTGGTTATTGCAGAGAAGGTAAGGTGCAGATGTCTAGATCGCTATTGCGTGAAA TGATAGGAAGTGGAATTCGTCCTGACAGTGTCACTTGTAGGCTTATTGTTCAAGGATATGCAAGGGATGGAAAGCTACTC TCAGCCTTGAATTTGGTTGTGGAGCTTCAGAAATTTGGAATTAAGATTCCTGAAAATTTATATGATTATCTCATAGTTGC ATTGTGCAAAGAAGGTCGACCATTTGCTGCTAGAAGTTTTCTGATAAGGATATCTCAGGATGGCTATGTGCCTGAAATCA GTACTTTCAATAGCCTGGTTGAGTCTCTATGTAAATTCAATAATGTGGAAGAGGCACTAATTGTGAAATCTGAGATGCTA AAGAATAGTATGAGGCTGAGTCTCACTGCCTATAGAGCTATTATAAGCGGCTTGTGTAGAGTAAACAGGACTCTGGAAGC TGAAGCCTTGTTGGAGGAAATGGTTAGCTTAGGTATTCTACCTGATCTAGAAACTAAGAGGGCATTAATAAATGGATATT GTAAAGAAAATAATGTTGATAGAGCTGAGTCATTATTGAAATTCTTTGCCAAGGAGTTTCAACTTTACGACACTGAAAGC TACAATTCAGTTGTTAAAGTCTTTTGTGAGGTTGGTGATGTGGCAGAGCTGATGGAGCTTCAGGATAGGCTACTCAAGGT GGGGTATGTTCCAAATAGTTTAACATGCAAGTACGTGATTTGCGGATTGCAGAAAGTTATGGAACTAGATGATGAGATAT TGAGACACAACATGCTAGAACCTTGA
Protein sequence (LotjaGi2g1v0242000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTHEISRVLLRCQSDHSSALTFFNWVKNDLGVKPAVQNYCVIVHILAWSRVFSKAMKLLCELIHLVEVEGVFSNVDIYQ NLVLSTEDCNWNPAIFDMLIKAYVKVGMVEKGLVTFRKNIEACFIPNVVACNCLLSGLSKFNYIDQCWEVYEEMGRLGIH RNAFTFNILTNVLCKYGDTDKVNGFLEKMEEEGFEPDLVTYNTLINSYCKKRRLEDAFYLYKIMYIRGVTPNLISHSALM NGLCEEGKIKEAHQLFNQMVQRGIDPDVVSYNTLISGYCREGKVQMSRSLLREMIGSGIRPDSVTCRLIVQGYARDGKLL SALNLVVELQKFGIKIPENLYDYLIVALCKEGRPFAARSFLIRISQDGYVPEISTFNSLVESLCKFNNVEEALIVKSEML KNSMRLSLTAYRAIISGLCRVNRTLEAEALLEEMVSLGILPDLETKRALINGYCKENNVDRAESLLKFFAKEFQLYDTES YNSVVKVFCEVGDVAELMELQDRLLKVGYVPNSLTCKYVICGLQKVMELDDEILRHNMLEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 189 | 183 | 3.7E-26 | ||
| ProSiteProfiles | 92 | 126 | 35 | 8.221 | ||
| PANTHER | 96 | 360 | 265 | 7.0E-100 | – | |
| Pfam | 97 | 117 | 21 | 0.85 | ||
| Pfam | 126 | 175 | 50 | 5.4E-13 | ||
| ProSiteProfiles | 127 | 161 | 35 | 9.778 | ||
| TIGRFAM | 129 | 162 | 34 | 7.8E-5 | ||
| ProSiteProfiles | 162 | 196 | 35 | 11.575 | ||
| TIGRFAM | 164 | 197 | 34 | 5.0E-7 | ||
| Gene3D | 190 | 260 | 71 | 2.4E-23 | ||
| Pfam | 196 | 244 | 49 | 1.2E-15 | ||
| ProSiteProfiles | 197 | 231 | 35 | 13.121 | ||
| TIGRFAM | 199 | 232 | 34 | 3.6E-10 | ||
| ProSiteProfiles | 232 | 266 | 35 | 12.945 | ||
| TIGRFAM | 235 | 268 | 34 | 1.5E-9 | ||
| Gene3D | 261 | 330 | 70 | 6.6E-18 | ||
| Pfam | 266 | 315 | 50 | 7.1E-14 | ||
| ProSiteProfiles | 267 | 301 | 35 | 14.041 | ||
| TIGRFAM | 269 | 303 | 35 | 3.6E-10 | ||
| ProSiteProfiles | 302 | 336 | 35 | 9.229 | ||
| PANTHER | 329 | 530 | 202 | 7.0E-100 | – | |
| Gene3D | 331 | 402 | 72 | 2.1E-10 | ||
| ProSiteProfiles | 337 | 371 | 35 | 8.243 | ||
| Pfam | 367 | 399 | 33 | 4.5E-6 | ||
| ProSiteProfiles | 372 | 406 | 35 | 9.69 | ||
| TIGRFAM | 375 | 405 | 31 | 0.0022 | ||
| Gene3D | 403 | 471 | 69 | 9.7E-13 | ||
| ProSiteProfiles | 407 | 441 | 35 | 11.159 | ||
| TIGRFAM | 410 | 442 | 33 | 4.1E-7 | ||
| Pfam | 410 | 455 | 46 | 1.6E-8 | ||
| ProSiteProfiles | 442 | 472 | 31 | 7.761 | ||
| Gene3D | 472 | 538 | 67 | 1.1E-6 | ||
| ProSiteProfiles | 477 | 511 | 35 | 10.622 | ||
| TIGRFAM | 480 | 512 | 33 | 8.6E-4 | ||
| Pfam | 480 | 508 | 29 | 0.79 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0242000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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