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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0242600 |
| Transcript ID | LotjaGi2g1v0242600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi2g1v0242600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70566785..70569568) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGAAAGAATTATTAAAAATAAATTTATTTGTCCACTCAATTTTTAGTATTTAAGTATTTCAACACAATTATGATTCT TTCTTTTTACACGTCAATTTAAATATATGTTACTTTATAGTGCATAAAATTAGGGGAGTTATACTTTGGGAATGGGTTCT TACGTAAACCCACTTGACGATTTAAGTGATCCATTCAGGATAGGCCCATATAAGGAAGGAGATAGGGTTATCTCGCTTGG TCTCCTTCGTGGTCATGAAAACTTACGGCGCTGCAACTCTCTCCTAAGGAGAGTGTGACATACAGTGAAAGCCCTTATCT ATACACTATTGCAAGATTCAGAGATCAAAGCAAGACGACTTTCGACGTAGATCCCCCACATTTTCAATTCTCTACAGGTG CGAAATCAGATTTTATATAATTGGTTTTCTATAATCATATCTGAATTATCATTTAGATCTTGCATTTGGTATCACAGACA TTATGTATGACTTTTAGACTCAAATTTGTTATTTGATGGCCCCAAATTCTTTTAGAATCAATTTATTCAGGTAGATCTTG CATGAGTGGTTTATCCTGATATTTATTCTTATAGTGATTACAATTTAGGGTAGCCGCCTTTCAAATTGCTTTCCTGATCA ATGCTCGGATACTTTTCTTAGGGTAGGAGTGGGTGGTGGTGGGTGCTTTGGGGTTTTTGATTTTTGGTTATGGGGAATTC TCTTCTTTGCCTGACTTTGGGGGTTATTCTTTGTTAGGTCGGGTTGTTTTGGGTTTTGCTGATTTTTATCCATTTTGGAT GAGGGTTGTATATCTCTCACAATCTTATCCTCATCAATATAAGATTTTGCGTTCGAAAAAAAATAACAATTATAATTTAA GTGAATAGAAATCACATTTACAAAATTAAGAATCGAGATGGCAAAGAAAGTTACCCTTGGAACTATGAATTCATGTGAGT GATTTTCCTCAAAGTTGTAATTATGATCACTCATTCTTGTGACTTATTGGTTTGTACGTCCTTAGAAAATGTTAGGAGAA TCTAGAAAGATCATGTTTGATGTATATGGATTTGTTTTCTTTTGACTAGCATGAAGTATATGTTTTGGAGATGCTTGATT CAAGGTTAAATTAGTTATCTAGAGTGTAACATAATATTGTTAAACTTGTTGAGATTGTCATTCTAGTAACCCACACATTT TATGGCATTTATCATATTTTTTCCAAGCGTTGTTGGATATTTCTTTTATGGAAATATGGAGTTAACATATCATACATCAT ATTATTTTGATAACTGAGATCATTTTGGACAATGCATTTAAAAGATTAATACTATTGAATGTTGATTGTTGATCATGTCC ATATAGGAAGATTGCGAAAGAAGGAAGAGTACCATAGAAGGAAGAGGCCACGTTGCTTTATCCTATCTCTATATAAAGTT ATAACATTTCAGACTTGAAGCTACAAAGTGATCAAGTGCACCAAAATGATGAGAAACAGTAGCAGCAATGGACTAGTAAA CATGAATAAAAGGACCCTCAATCTGCCTGAGGAATTGATAATTCAGATATTGTTGAGGCTGCCAGTAAAGTCCATTGTGC GTTTCAAATGCGTTTGTAAGTCATGGCTTTCACTCATCTCTGACACCCACTTTGCAGAATCAAATTTTAAACTTGCTGCC ACCACACCCACCCACAAGCTTTTGTTCATAGCAAATTCTGCTCCAGAAACTCGATCTGTAGACTTAGATCATGATGCACT GTCTCTTAATTCTTCTGCTTCCACTACAGTAAAACTTAATTTTCTGCAGCTTCCTCCATCATCTTATTCTAGTCTTGGCA TTGTTGGTTCGTGTAGAGGGTTTCTGCTTCTGAATTGTAACGCAAATATATTTCTTTGGAATCCATCCACCGGTGTTCAC AATCAAATACCTTGTTCACCTATTGCATCCAATGTGCATGCCTACCTATATGGTTTTGGGTATGACCCATCACAAGATGA CTATTTGGTTGTTCTAGCATCCTATGAAAGAAACACAGCTGATTTGTTAAAACATTTGGAGTTTTTCTCATTGAGAGCTA ATGTATGGAAAGAAATCGAGGATACCCATTATATGAATGTCGGTTTTTATTGGAACGGATGTGATCCTAGAGTTGGGTCG CTCTTGAATAATGCTATTCATTGGGTGGCTTTTCATCATGATACAGTGGTGAATCATATTATTGCATTTGATTTAATTGA AAGGAGAGTTTCTGAGATACCACTGCCAGATGATTTTGAGCATGAATCAATAGATTATGAATTGTGGGAATTTAGAGGGC TTCTAAGTCTGTGGGTTCATCATGAAGAGGATGATACAGTTAATATATGGGTGATGGAGAGGTACAAAGTTCAGTCATCT TGGGTTATTACTCTTGTTGTATCTTTTAGTGAAATTCCCACTCAATACTTTTCCCCAATATGCTCTAGGAAAAATGGTGA CATTGTTGGAACAGATGGTGATAAAGGACTGGTGAAGTATAATGACAAAGGACAGCTACTAGAGCATCACTCTTATGATG AATATCCTTATGTTTCCCTAGCCATGTATACAGAGTCTCTGCTTTCACTCCCTGTTGTTGGTGATAGAGAACTAGCAAGC TGAAAATGTGTGACAAGAACAAACAAGAAGAATGCGGTTGTGTAATATCATGTATGCCTTTTAGAATGAGGTTTCTCTTT TTATTTGCATTATTGTGATATACAATATTGATGAAATTTAAGTTTTCTTAACTCTTTTTAAAAA
CDS sequence (LotjaGi2g1v0242600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGAAACAGTAGCAGCAATGGACTAGTAAACATGAATAAAAGGACCCTCAATCTGCCTGAGGAATTGATAATTCA GATATTGTTGAGGCTGCCAGTAAAGTCCATTGTGCGTTTCAAATGCGTTTGTAAGTCATGGCTTTCACTCATCTCTGACA CCCACTTTGCAGAATCAAATTTTAAACTTGCTGCCACCACACCCACCCACAAGCTTTTGTTCATAGCAAATTCTGCTCCA GAAACTCGATCTGTAGACTTAGATCATGATGCACTGTCTCTTAATTCTTCTGCTTCCACTACAGTAAAACTTAATTTTCT GCAGCTTCCTCCATCATCTTATTCTAGTCTTGGCATTGTTGGTTCGTGTAGAGGGTTTCTGCTTCTGAATTGTAACGCAA ATATATTTCTTTGGAATCCATCCACCGGTGTTCACAATCAAATACCTTGTTCACCTATTGCATCCAATGTGCATGCCTAC CTATATGGTTTTGGGTATGACCCATCACAAGATGACTATTTGGTTGTTCTAGCATCCTATGAAAGAAACACAGCTGATTT GTTAAAACATTTGGAGTTTTTCTCATTGAGAGCTAATGTATGGAAAGAAATCGAGGATACCCATTATATGAATGTCGGTT TTTATTGGAACGGATGTGATCCTAGAGTTGGGTCGCTCTTGAATAATGCTATTCATTGGGTGGCTTTTCATCATGATACA GTGGTGAATCATATTATTGCATTTGATTTAATTGAAAGGAGAGTTTCTGAGATACCACTGCCAGATGATTTTGAGCATGA ATCAATAGATTATGAATTGTGGGAATTTAGAGGGCTTCTAAGTCTGTGGGTTCATCATGAAGAGGATGATACAGTTAATA TATGGGTGATGGAGAGGTACAAAGTTCAGTCATCTTGGGTTATTACTCTTGTTGTATCTTTTAGTGAAATTCCCACTCAA TACTTTTCCCCAATATGCTCTAGGAAAAATGGTGACATTGTTGGAACAGATGGTGATAAAGGACTGGTGAAGTATAATGA CAAAGGACAGCTACTAGAGCATCACTCTTATGATGAATATCCTTATGTTTCCCTAGCCATGTATACAGAGTCTCTGCTTT CACTCCCTGTTGTTGGTGATAGAGAACTAGCAAGCTGA
Protein sequence (LotjaGi2g1v0242600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRNSSSNGLVNMNKRTLNLPEELIIQILLRLPVKSIVRFKCVCKSWLSLISDTHFAESNFKLAATTPTHKLLFIANSAP ETRSVDLDHDALSLNSSASTTVKLNFLQLPPSSYSSLGIVGSCRGFLLLNCNANIFLWNPSTGVHNQIPCSPIASNVHAY LYGFGYDPSQDDYLVVLASYERNTADLLKHLEFFSLRANVWKEIEDTHYMNVGFYWNGCDPRVGSLLNNAIHWVAFHHDT VVNHIIAFDLIERRVSEIPLPDDFEHESIDYELWEFRGLLSLWVHHEEDDTVNIWVMERYKVQSSWVITLVVSFSEIPTQ YFSPICSRKNGDIVGTDGDKGLVKYNDKGQLLEHHSYDEYPYVSLAMYTESLLSLPVVGDRELAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 374 | 362 | 5.7E-113 | – | |
| PANTHER | 13 | 374 | 362 | 5.7E-113 | – | |
| ProSiteProfiles | 14 | 64 | 51 | 11.087 | ||
| Pfam | 18 | 53 | 36 | 1.0E-9 | ||
| SUPERFAMILY | 19 | 89 | 71 | 6.93E-15 | ||
| Gene3D | 19 | 56 | 38 | 3.6E-9 | – | |
| SMART | 20 | 59 | 40 | 7.0E-8 | ||
| SUPERFAMILY | 59 | 259 | 201 | 9.81E-6 | ||
| TIGRFAM | 121 | 319 | 199 | 8.8E-26 | ||
| Pfam | 227 | 319 | 93 | 2.0E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0242600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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