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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0242700 |
Transcript ID | LotjaGi2g1v0242700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi2g1v0242700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70575796..70578300) extracted from Lotus japonicus Gifu genome v1.2.
GTGGTCATGAAAACTTACGGCGCTGCAGCTCTCTCCTAAGGAGAGTGTGACATACAGTGAAAGCCCTTATCTATACACTA TTGCAAGATTCAGAGATCAAAGCAAGACGACTTTCGACGTAGATCCCCCACATTTTCAATTCTCTACAGGTGCGAAATCA GATTTTATATATTTGGTTTTCTAATCATATATGAATTATCATTTAGATCTTGCATTTGGTATCACATACATTATGTATGA CTTTTAGACTCAAATTTGTTATTTGATGGCCCCAAATTCTTTTAGAATCAATTTATTCAGGTAGATCTTGCATGAGTGGT TTATCCTGATATTTATTCTTATAGTGATTACAATTTAGGGTAGCCGCCTTTCAAATTGCTTTCCTGATCAATGCTCGGAT ACTTTTCTTAGGGTAGGAGTGGGTGGTGGTGGGTGCTTTGGGGTTTTTGATTTTTGGTTATGGGGAATTCTCTTCTTTGC CTGACTTTGGGGGTTATTCTTTGCTAGGTCGGGTTGTTTTGGGTTTTGCTGATTTTTATCCATTTTGGATGAGGGTTGTA TATCTCTGACAATCTTATCCTCATCAATATAAGATTTTGCGTTCGAAAAAAAATAACAATTATAATTTAAGTGAATAGAA ATCACATTTACAAAATTAAGAATCGAGATGGCAAAGAAAGTTACCCTTGGAACTATGAATTCATGTGAGTGATTTTCCTC AAAGTTGTAATTATGATCACTCATTCTTGTGACTTATTGATGGTTTGTACGTCCTTAGAAAATGTTAGGAGAATCTAGAA AGATCATGTTTGATGTATATGGATTTGTTTTCTTTTGACTAGCATGAAGTATATGTTTTGGAGATGCTTGATTCAAGGTT AAATTAGTTATCTAGAGTGTAACATAATATTGTTAAACTTGTTGAGATTGTCATTCTAGTAACCCACACATTTTATGGCA TTTATCATATTTTTTCCAAGCGTTGTTGGATATTTCTTTTATGGAAATATGGAGTTAACATATCATATATCATATTATTT TGATAACTGAGATCATTTTCACAATGCTTTTAAAAGATCAATACTATTGAATGTTGATTGTTGATCATGTCCATATAGGA AGATTGCGAAAGAAGGAAGAGTACCATAGAAGGAAGAGGCAACATTGCTTTATCCTATCTCTATATAAAGTTTTAACATT TCAGACTTGAAGCTACAAAGTGATCAAGTGCACCAAAATGATGAGAAACAGTAGCAGCACTGGACTAGTAAACATGAAGC AAAAGACCCTCAATCTTCCTGAGGAATTGATAATTCAGATCTTGTTGAGGCTGCCAGTAAAGTCCATTGTGCGTTTCAAA TGCGTTTGTAAGTCATGGCTTTCACTCATCTCTGATCCCCACTTTGCAGAATCAAATTTTAAACTTGCTGCCAACACACC CACCTACAAGCTCTTGTTCATAGCAAAATCTGCTCCAGAAACTCGATCTATAGACTTAGATCATGATGCAATGTCTCTTA ATTCTTCTGCCTCCACTACAGTAAAACTTAATTTTCTGCAGCTTCCTCCATCATCTTATTCTAGTCTTGGCATTGTTGGT TCGTGTAGAGGGTTTCTGCTTCTGAATTGTAATGCAAATATATTTCTTTGGAATCCATCCACCGGTGTTCACAATCAAAT ACCTTGTTCACCTATTGCATCCAATGTGCATGCCTACCTATATGGTTTTGGGTATGACCCATCACAAGATGACTATTTGG TTGTTCTAGCATCCTATGAAAGAAACACAGCTGATTTGTTAAAACATTTGGAGTTTTTCTCATTGAGAGCTAATGTATGG AAAGAAATCGAGGATACCCATTATATGAATGCCGGTTTTTATTGGAACGGATGTGATCCTAGAGTTGGGTCGCTCTTGAA TAATGCTATTCATTGGGTGGCTTTTCATCATGATACAGTGGTGAATCATATTATTGCATTTGATTTAATTGAAAGGAGAG TTTCTGAGATACCACTGCCAGATGATTTTGAGCATGAATCAATAGATTATGAATTGTGGGAATTTAGAGGGCTTCTAAGT CTGTGGGTTCATCATGAAGAGGATGATACAGTTAATATATGGGTGATGGAGAGGTACAAAGTTCAGTCATCTTGGGTTAT TACTCTTGTTGTATCTTTTAGTGAAATTCCCACTCAATACTTTTCCCCAATATGCTCTAGGAAAAATGGTGACATTGTTG GAACAGATGGTGATAAAGGACTGGTGAAGTATAATGACAAAGGACAGCTACTAGAGCATCACTCTTATGATGAATATCCT TATGTTTCCCTAGCCATGTATACAGAGTCTCTGCTTTCACTCCCTGTTGTTGGTGATAGAGAACTAGCAAGCTGAAAATG TGTGACAAGAACAAACAAGAAGAATGCGGTTGTGTAATATCATGTATGCCTTTTAGAATGAGGTTTCTCTTTTTATTTGC ATTATTGTGATATACAATATTGATG
CDS sequence (LotjaGi2g1v0242700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGAAACAGTAGCAGCACTGGACTAGTAAACATGAAGCAAAAGACCCTCAATCTTCCTGAGGAATTGATAATTCA GATCTTGTTGAGGCTGCCAGTAAAGTCCATTGTGCGTTTCAAATGCGTTTGTAAGTCATGGCTTTCACTCATCTCTGATC CCCACTTTGCAGAATCAAATTTTAAACTTGCTGCCAACACACCCACCTACAAGCTCTTGTTCATAGCAAAATCTGCTCCA GAAACTCGATCTATAGACTTAGATCATGATGCAATGTCTCTTAATTCTTCTGCCTCCACTACAGTAAAACTTAATTTTCT GCAGCTTCCTCCATCATCTTATTCTAGTCTTGGCATTGTTGGTTCGTGTAGAGGGTTTCTGCTTCTGAATTGTAATGCAA ATATATTTCTTTGGAATCCATCCACCGGTGTTCACAATCAAATACCTTGTTCACCTATTGCATCCAATGTGCATGCCTAC CTATATGGTTTTGGGTATGACCCATCACAAGATGACTATTTGGTTGTTCTAGCATCCTATGAAAGAAACACAGCTGATTT GTTAAAACATTTGGAGTTTTTCTCATTGAGAGCTAATGTATGGAAAGAAATCGAGGATACCCATTATATGAATGCCGGTT TTTATTGGAACGGATGTGATCCTAGAGTTGGGTCGCTCTTGAATAATGCTATTCATTGGGTGGCTTTTCATCATGATACA GTGGTGAATCATATTATTGCATTTGATTTAATTGAAAGGAGAGTTTCTGAGATACCACTGCCAGATGATTTTGAGCATGA ATCAATAGATTATGAATTGTGGGAATTTAGAGGGCTTCTAAGTCTGTGGGTTCATCATGAAGAGGATGATACAGTTAATA TATGGGTGATGGAGAGGTACAAAGTTCAGTCATCTTGGGTTATTACTCTTGTTGTATCTTTTAGTGAAATTCCCACTCAA TACTTTTCCCCAATATGCTCTAGGAAAAATGGTGACATTGTTGGAACAGATGGTGATAAAGGACTGGTGAAGTATAATGA CAAAGGACAGCTACTAGAGCATCACTCTTATGATGAATATCCTTATGTTTCCCTAGCCATGTATACAGAGTCTCTGCTTT CACTCCCTGTTGTTGGTGATAGAGAACTAGCAAGCTGA
Protein sequence (LotjaGi2g1v0242700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRNSSSTGLVNMKQKTLNLPEELIIQILLRLPVKSIVRFKCVCKSWLSLISDPHFAESNFKLAANTPTYKLLFIAKSAP ETRSIDLDHDAMSLNSSASTTVKLNFLQLPPSSYSSLGIVGSCRGFLLLNCNANIFLWNPSTGVHNQIPCSPIASNVHAY LYGFGYDPSQDDYLVVLASYERNTADLLKHLEFFSLRANVWKEIEDTHYMNAGFYWNGCDPRVGSLLNNAIHWVAFHHDT VVNHIIAFDLIERRVSEIPLPDDFEHESIDYELWEFRGLLSLWVHHEEDDTVNIWVMERYKVQSSWVITLVVSFSEIPTQ YFSPICSRKNGDIVGTDGDKGLVKYNDKGQLLEHHSYDEYPYVSLAMYTESLLSLPVVGDRELAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 13 | 374 | 362 | 3.6E-114 | – | |
PANTHER | 13 | 374 | 362 | 3.6E-114 | – | |
ProSiteProfiles | 14 | 64 | 51 | 10.849 | ||
Pfam | 18 | 56 | 39 | 2.6E-10 | ||
Gene3D | 19 | 56 | 38 | 7.2E-10 | – | |
SUPERFAMILY | 19 | 89 | 71 | 3.01E-15 | ||
SMART | 20 | 59 | 40 | 8.3E-8 | ||
SUPERFAMILY | 110 | 261 | 152 | 1.7E-5 | ||
TIGRFAM | 121 | 319 | 199 | 1.4E-25 | ||
Pfam | 227 | 319 | 93 | 2.0E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0242700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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