Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0243000 |
| Transcript ID | LotjaGi2g1v0243000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi2g1v0243000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70604514..70606931) extracted from Lotus japonicus Gifu genome v1.2.
CATGAAAACTTACGGCGCTGCAACTCTCTCCTAAGGAGAGTGAGACATACAGTGAAAGCCCTTATCTATACACTATTGCA AGATTCAGAGATCAAAGCAAGACGACTTTCGACGTAGATCCCCCACATTTTCAATTCTCTACAGGTGCAAAATCAGATTT TATATATTTGGTTTTCTATAATCATATATGAATTATCATTTAGATCTTGCATTTGGTATCACAGACATTATGTATGACTT TTAGACTCAAATTTGTTATTTGATGGCCCCAAATTCTTTTAGAATCAATTTATTCAGGTAGATCTTGCATGAGTGGTTTA TCCTGATATTTATTCTTATAGTGATTACAATTTAGGGTAGCCGCCTTTCAAATTGCTTTCCTGATCAATGCTCGGATACT TTTCTTAGGGTAGGAGTGGGTGGTGGTGGGTGCTTTAGGGTTTTTGATTTTTGGTTATGGGGAATTCTCTTCTTTGCCTG ACTTTGGGGGTTATTCTTTGCTAGGTCGGGTTGTTTTGGGTTTTGCTGATTTTTATCCATTTTGGATGAGGGTTGTATAT CTCTGACAATCTTATCCTCATCAATATAATATTTTGCGTTCGAAAAAAAATAACAATTATAATTTAAGTGAATAGAAATC ACATTTACAAAATTAAGAATCAAGATGGCAAAGAAAGTTACCCTTGGAACTATGAATTCATGTGAGTGATTTTCCTCAAA GTTGTAATTATGATCACTCATTCTTGTGACTTATTGATGGTTTGTACGTCCTTAGAAAATGTTAGGAGAATCTAGAAAGA TCATGTTTGATGTATATGGATTTGTTTTCTTTTGACTAGCATGAAGTATATGTTTTGGAGATGCTTGATTCAAGGTTAAA TTAGTTATCTAGAGTGTAACATAATATTGTTAAACTTGTTGAGATTGTCATTCTAGTAACCCACACATTTTATGGCATTT ATCATATTTTTTCCAAGCGTTGTTGGATATTTCTTTTATGGAAATATGGAGTTAACATATCATACAATATATTATTTTGA TAACTGAGATAATTTTTGACAATGCTTTTAAAAGATCAATACTATTGAATGTTGATTGTTGATCATGTCCATATAGGAAG ATTGAAGAGGCAACGTTGCTTTATCCTATCTCTATATAAAGTTATAACATTTCAGACTTGAAGCTACAAAGTCATCAAGT GCACCAAAATGATGAGAAACAGTAGCAGCAATGGACTAGTAAACATGAATAAAAGGACCCTCAATCTGCCTGAGGAATTG ATAATTCAGATATTGTTGAGGCTGCCAGTAAAGTCCATTGTGCGTTTCAAATGCGTTTGTAAGTCATGGCTTTCACTCAT CTCTGATCCCCACTTTGCAGAATCAAATTTTAAACTTGCTGCCACCACACCCACCCACAAGCTTTTGTTCATAGCAAATT CTGCTCCAGGAACTCGATCTGTAGACTTAGATCATGATGCACTGTCTCTTAATTCTTCTGCTTCCACTACAGTAAAACTT AATTTTCTGCAGCTTCCTCCATCATCTTATTCTAGTCTTGGCATTGTTGGTTCGTGTAGAGGGTTTCTGCTTCTGCATTG TAACGCAAATATATTTCTTTGGAATCCATCCACCGGTGTTCACAATCAAATACCTTGTTCACCTATTGCATCCAATGTGC ATGCCTACCTATATGGTTTTGGGTATGACCCATCACAAGATGACTATTTGGTTGTTCTAGCATCCTATGAAAGAAACACA GCTGATTTGTTAAAACATTTGGAGTTTTTCTCATTGAGAGCTAATGTATGGAAAGAAATCAAGGATACCCATTATATGAA TGCCGGTTTTTATTGGAACGGATGTGATCCTAGAGTTGGGTCGCTCTTGAATAATGCTATTCATTGGGTGGCTTTTCATC ATGATACAGTGGTGAATCATATTATTGCATTTGATTTAATTGAAAGGAGAGTTTCTGAGATACCACTGCCAGATGATTTT GAGCAGGAAGCAATAAATTATGAATTGTGGGTATTTAGAGGGCTTCTAAGTCTGTGGGTTCATCATGAAGAGGATGATAC AGTTAATATATGGGTGATGGAGAGGTACAAAGTGCAGTCATCTTGGGTTATTACTCTTGTTGTATCTTTTAGTGAAATTC CCACTCAATACTTTTCCCCAATATGCTCTACAAAAAGTGGTGACATTGTTGGAACAGATGGTGATAAAGGACTGGTGAAG TATAATGACAAAGGACAGCTACTAGAGCATCACTCTTATGATGAATATCCTTATGTTTCCCTGACCATGTATACAGAGTC TCTGCTTTCACTCCCTGTTATTGGTGGTAGAGAACTAGCAAGCTGAAAATGTGTGACAAGAACAAACAAGAAGAATGCAG TTGTGTAATATCATGTAT
CDS sequence (LotjaGi2g1v0243000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGAAACAGTAGCAGCAATGGACTAGTAAACATGAATAAAAGGACCCTCAATCTGCCTGAGGAATTGATAATTCA GATATTGTTGAGGCTGCCAGTAAAGTCCATTGTGCGTTTCAAATGCGTTTGTAAGTCATGGCTTTCACTCATCTCTGATC CCCACTTTGCAGAATCAAATTTTAAACTTGCTGCCACCACACCCACCCACAAGCTTTTGTTCATAGCAAATTCTGCTCCA GGAACTCGATCTGTAGACTTAGATCATGATGCACTGTCTCTTAATTCTTCTGCTTCCACTACAGTAAAACTTAATTTTCT GCAGCTTCCTCCATCATCTTATTCTAGTCTTGGCATTGTTGGTTCGTGTAGAGGGTTTCTGCTTCTGCATTGTAACGCAA ATATATTTCTTTGGAATCCATCCACCGGTGTTCACAATCAAATACCTTGTTCACCTATTGCATCCAATGTGCATGCCTAC CTATATGGTTTTGGGTATGACCCATCACAAGATGACTATTTGGTTGTTCTAGCATCCTATGAAAGAAACACAGCTGATTT GTTAAAACATTTGGAGTTTTTCTCATTGAGAGCTAATGTATGGAAAGAAATCAAGGATACCCATTATATGAATGCCGGTT TTTATTGGAACGGATGTGATCCTAGAGTTGGGTCGCTCTTGAATAATGCTATTCATTGGGTGGCTTTTCATCATGATACA GTGGTGAATCATATTATTGCATTTGATTTAATTGAAAGGAGAGTTTCTGAGATACCACTGCCAGATGATTTTGAGCAGGA AGCAATAAATTATGAATTGTGGGTATTTAGAGGGCTTCTAAGTCTGTGGGTTCATCATGAAGAGGATGATACAGTTAATA TATGGGTGATGGAGAGGTACAAAGTGCAGTCATCTTGGGTTATTACTCTTGTTGTATCTTTTAGTGAAATTCCCACTCAA TACTTTTCCCCAATATGCTCTACAAAAAGTGGTGACATTGTTGGAACAGATGGTGATAAAGGACTGGTGAAGTATAATGA CAAAGGACAGCTACTAGAGCATCACTCTTATGATGAATATCCTTATGTTTCCCTGACCATGTATACAGAGTCTCTGCTTT CACTCCCTGTTATTGGTGGTAGAGAACTAGCAAGCTGA
Protein sequence (LotjaGi2g1v0243000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRNSSSNGLVNMNKRTLNLPEELIIQILLRLPVKSIVRFKCVCKSWLSLISDPHFAESNFKLAATTPTHKLLFIANSAP GTRSVDLDHDALSLNSSASTTVKLNFLQLPPSSYSSLGIVGSCRGFLLLHCNANIFLWNPSTGVHNQIPCSPIASNVHAY LYGFGYDPSQDDYLVVLASYERNTADLLKHLEFFSLRANVWKEIKDTHYMNAGFYWNGCDPRVGSLLNNAIHWVAFHHDT VVNHIIAFDLIERRVSEIPLPDDFEQEAINYELWVFRGLLSLWVHHEEDDTVNIWVMERYKVQSSWVITLVVSFSEIPTQ YFSPICSTKSGDIVGTDGDKGLVKYNDKGQLLEHHSYDEYPYVSLTMYTESLLSLPVIGGRELAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 374 | 362 | 6.1E-114 | – | |
| PANTHER | 13 | 374 | 362 | 6.1E-114 | – | |
| ProSiteProfiles | 14 | 64 | 51 | 11.087 | ||
| Pfam | 18 | 56 | 39 | 3.7E-10 | ||
| Gene3D | 19 | 56 | 38 | 7.2E-10 | – | |
| SUPERFAMILY | 19 | 139 | 121 | 1.3E-15 | ||
| SMART | 20 | 59 | 40 | 8.3E-8 | ||
| SUPERFAMILY | 47 | 259 | 213 | 7.06E-6 | ||
| TIGRFAM | 121 | 319 | 199 | 8.9E-26 | ||
| Pfam | 227 | 319 | 93 | 1.8E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0243000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…