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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0249300 |
| Transcript ID | LotjaGi2g1v0249300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT5G40250.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46; TrEMBL-Plants: tr|A0A0L9VPW3|A0A0L9VPW3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0249300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71487590..71492928) extracted from Lotus japonicus Gifu genome v1.2.
CAATAAGTCAATAACATTCAACAAGTGGATTAACAGTGAGTACCACGCTCCTTTACAACGAGTGGGCTTAAATTTTTGTG GTTTCTTTTTGTCATCCCTTACCTCTTACTTTGGGAACTGCTGCTACTTTCACCATTTTGGATTCTTTCCTTCTTCCCAG AAATAAATTTGGCGCATTTGGTTCGGAATTCAGATCACATGAGAGCCAACAGACACACACAGCCAACAGCAAGACTTTCA GATTTCACTTTTCTCTTCCCGCTCAACACAAAAACAACATCATTGGAACAAGACCATTTCAATCAAAACTTGAAGTGAAG AAGAAACAAACATCCAAATCATGAACTACCCATTAACGAGTTAGGTGAGTTGAGTCAATCTATTGCGTCAAAAAGCAATC TTGCTCCATCACTATTTGGATATTTTCATTTGAAATTATTTGCTACATCACTAGCTATTGTTTGTATCTGTCTGATGTAA GAACACTTTAGTTTAGGTGAGTTTTGTTGTATTTAAGTGTAAAGATATGACTAGGATTGTGTTTGGTTGAGGAGTGTGTA TTTTTTGTGATCTGTGTGGTGTCAGAAAAGCATGTATCCTATGTGGTTTTTTGGCCATACCCATTTGAAGATGGCTTGGG TTAAGCATCAAATCCAGCAGAGAGATGGTTACTTGAACTACCCTCCACCAGTTTTGTCTTCATCTTCTTCATCCCCATAC CCTGGTTCTGTTTTCCATAAGGAACCAATGTCTTCTTCTTATTCAACACCACCACCTCCTTCATCATCTTCTGGTACTAG AATTAGTCCAGCTGTTCTTTTCATCATAGTGGTTTTGGCTGTTCTGTTTTTCATTTCTGGTCTGCTCCACCTGCTTGTTA GATTCCTCATAAAGCACCCATCTTCTTCTGCATCTGCTCAATCCAACAGACACAATGAAATATCCACCTCTGATGCTCTT CAGAGACAGCTGCAGCAGCTCTTCCACCTCCATGATTCTGGTTTAGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCA GTTCAAGGAGATTGTGGGTATGAAAGAGCAATTTGACTGTGCTGTTTGCTTGTGTGAGTTTACTGAAAAGGATAAGCTCA GGTTGCTTCCTATGTGCAGCCATGCTTTTCATATCAGTTGTATTGATACCTGGCTTTTGTCAAACTCCACTTGCCCTCTT TGTAGAGGAACCCTCATTGCTCCAGGGTTTTCTATTGATAACCCCATGTTTGATTTTGATGATCTGAGGGAAGATGATGA TGTGGGAAATAGATTCAGTTCTAGACAGAAAACAGTTGTTGTTGAAGAAACTGTAGAGAAAGAGAAAGAGAAAGGGGTTT TCCCTGTGAGGCTTGGTAAATTCAAAAAGGTGGATGTGGTGGAGGCTGGGGAGACTAATGGAGTTGGAGAAACAAGTAGC AGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGATCTTACCAGTATGTGGTTGGCAATTCAGAACTCAGGGTAGCCTT GAACCATCCAAGACTTACCAAAGGAACAGAAAATGCAGAGAGGCTTTCAGTGGAGGGGGATATGGAGGCAAAGAAGATTA GTAGTGTCAGTAAAGGTGACAGCTTTTCTATCTCCAAAATCTGGTTGTGGCCAAAGAAGGGAAATTTACATGGTTCTATG GAAGCTCAAGTGGGCATGTCATCTCATCTTAATACTAACTTGAGGGAGATGAGGAAAACAGAAGGGGTATGAAAGGTATC CACATTATTTTTTTCTTCTTTCACTTGAATCCATTGATTACAGCTTCTTTTCTCATAGAATTTCAAAAATTTTGGTGTGC TAATTTTGAAATTGTGGTGGCTGATTGTGGCATGATATTGGTATATTATGATTTTGAGTTAAGAAGATATAAGAAATTCA TCTCTTGATCTCTTCAAACAGATCTGATTCCATGGTATGATGAAATTGGGTTTATGACAGCAAATGTTGATTTGATCTTA TTTGGTTATGCATAGTAGATAGTACAAGTAAAAACATCAACATATCCTTGTTAGATCTATCAACTCCCTAGTCCAAACAA TTTGTACTATTTACTCAAAATAATAACAATGGAGAGATCTATGGTAGTTCATAGATCAAATTTGAAATTGGTTCTGGAGG CTAGCCTGTTTCAAAGCCAAATTTGTCTCTTTCTGTGTCAATGTTTTCTTACCATCTGATCATGGTGAGTGGCAAGTGCA TTTGCTTTTTTGAGGATTTTGGTTTTTATTTAATCTCTTTTCTCTTTATCACTGCAATTACTTTTTTGGGAGTGTGAATG GGAACCTTTTGTGCCTAATATCTTTTTAGACTGGGCAGTGATGGTGGGATCCACAAAAGCTGGTGTAATAGGATCTATTT ATCTTTGTGAAGAATTTTGATTCAAAAATTGGATGTATCCCCCACTCATGTGGGGCCACTTTACCTCTCCCAAGTCCCAT GTGTCCATGTTGAAATTAAAGACAAATTTATAATGGGAATCAATCAGTTCCAAAATTGACTTGGGGGGAAAGAAAGGGGG TATTTGTTCAAGAAGGAAATTATCTTGGATTTGCACTTTTTAGAATACTAGACTAGCAAGCAAACCCAAATGTTGTGTTT TCTAGATTAATGATTTGATAGATCAACAATCTGATAGCACCCAAGGTGGTTAAGTTTGTATGATTTAAATCCATGTAGTT ATGTCATGCTCACATTTTGTGAACCTAAGTACTGATGTGGAATTGTGGATCTACGCAGCAAAGTTGGATTTTTTGAGTGC CTAGAATTGATTTAGGTAAAATTGTGTTAAAAATGAAGTAATTTATGTTTAGATATGTGTTTGGAAAAAGTGATTTGTGC ACGGTAATGTTGTGAAATCTAATTATAAAATCTTAAAATTAATTAGGTCTTAGGCCAAGTACAGTTTAGCTTGATATAGA AATAATCCAGCGATTATCCGGTAGAAACTATGTGAAACAAGAATGAAATTGAAATATCATAGAATGGTATGCTATTAAAC CTTGGAAAGAAAAGTATCAACATAAAGAGGGAAAATAGAGGGAGTGCCAACCAGAAAGGTACAAAAGCAAATTGGAGCAA TTCAGAGGAGAGGAAATCCATGACTTTTAATTATAACTAGTAACATCCTTTTGTTTGTTTTCATATTTTGATTATAGACT TTTGTGGTGGCATATTTGTTGTTATTGTAGCTTAATTTTTGTTTTAAGAGTTCTGTCGGTGGAATATTCAGACTGCATGT TACCAACTTCCAAAAGGAGAGTCTACTCCTATGAAATGATGATAAATTGATAATGTCTTCAATCTCTATGTATTAGTTCA ATAGAAAAAGTGAAAAACAACACTCCCCTAACAAAATTAAGATATAAAAAATAAGGGAAGAGTGAAGGAAATGTTGGACC AGCACACACTCACCAAGAGTCTATCAATAATACTATAATGGATTCACTATGAGTATATGGATCTGAATCAGTACTCAGCT TCTTTGGTTATGCAGTAAGAAATACCATAATTTTTTTTGAGAGAAACTATAAAATATTGTTCTGATTGGCCCTAAATTAT CTAGATCCAATATCATCATAGACGATCCAAAAGACTCACGACCGAGTGAATGTTGCGTTGACCCAAAATACTTTTCCTTT GAACCTCTACTAAGGCTTCACAAGTTCGACAGAGTCATCATTCCCTTGGAGAGGTTCTCTTCATCCACTAGGGAGACTTT CCTCCTACTTGGTTAGGTTTTCCCTATACAAAGTGAGTTTCTGCCACATTACACAATTTACTACCCAAATCGTTTTTTGC TTTCTCTTTTCTTTGGCCACCACTGCCACCCTCCCTCTGTCGTTGGCCACCATTGTCGACCTCTCCTTAGGCTGCTTCAC GTCTCCTCGCTCTCCATCCCTGAAGGCATCACGAACCTATGAGCCACCTTGGCATCAGGCTCCAGCCACCACCTACTGGC TCCAGCTACTGCCCCTGCCTCGGTCACCTCTCTTGACCTCAGTCTCTGCTGCTGCCATCTTTGTAGCTTCCATCTCCGGT GTGGGTGTCTCCTTTTGCCTACTCAGCTCTTGCTGAGGTATGATGTTTGGAATCCTCATAAGTCAATTGAGCCAATATAG CTAATGACACCCAAGTTGTCCCAAGCACAACCATTGGCTTAGAAATCGTTGACAATGGCGCTTCACTAAGGCTAAGTACC TCACACACAAGTCACACTACATTCTACTAATGCATGTTTGATGTATAATTACATAATAACTACTTTTTTTTTTAAAATTG ATTTTTGCGTGGATAGCTTTGTCATTCATTGATACTTTTTAACCTGACTTGAATAAGATAGGATGGTACATGTGGTTTTT TCTTTTGAAAAAATCTTATCGTACCACAAACCATTGAGTACCTGTGACTGTGGGCGTGGGCTAGCGTTTGTTGTTGGTTG GGTCCAAAGTTCTGAGGTCAGAGGACAACTGTGTACACTGCTGGGGTGGGAAACTTGGAAATTGTCAACAAGTTATGTTC ACAAATTTAAGTTCACGCTCTGCCAGCGCGTATGTTAGTTAGGACTATTAATCTTTGAAACCCAAATTAGTCGGTTGTTA GTGCCATCGTTCATAATTGGTTTGGGTTTTCATAGCAGCTCAATGACATTGAAGGGTTTGTTTAAATTTTGACAAGTTCA ACTTCCATCACTCATCATATTGATAAAGCAATAATTGATTTTAAATGGTAAAAAAAAAAAAATTTTGTTGGCTCTTATAG GGTGTGGTTAGGCCCAATCTTCTTGGATTGATAATATCTTTCGGTTATTGTTTATTTATTCCATATGGGAGTTTTTTTTT TGTTAAGTTGGGCTCATAGTGTGAGCTTGAAACCCTAGCACAACATGAGTGCAAACTAATTGGAATTCCATTAGATACGT GCCCCACCCCTAACCTAGTTTGCATCACTGGCCTTCCCCTTTGAGGGGAGCCTCCCCCTTCTCATGAGAGATATTCTACC CATTTTGGGAGTTACAAATGACTACCCTCATTATTGTGAATTTATTGTGCTTGGCTTTTTGGGTTGTATGGACACTTGGA CAGTCTTGCTAGCCAGGGTCCTAAGGGAGGGGAGGAGAGGAATCCTTAATGTGAGCTTTTGGTAGAAGTAATGCTTATGT CGCAGACCGGTCATCATAACGATGGCTTCGAAGGGACACGCCCTCCAAACTCTCAAGTGTTGTGCGCTTGTGGGTTTTAA GAAGTGATTTATAAGTGATAAGGTCATCGTAAGTCGTAACACGATGGCTCGGGAGGGAC
CDS sequence (LotjaGi2g1v0249300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCCTATGTGGTTTTTTGGCCATACCCATTTGAAGATGGCTTGGGTTAAGCATCAAATCCAGCAGAGAGATGGTTA CTTGAACTACCCTCCACCAGTTTTGTCTTCATCTTCTTCATCCCCATACCCTGGTTCTGTTTTCCATAAGGAACCAATGT CTTCTTCTTATTCAACACCACCACCTCCTTCATCATCTTCTGGTACTAGAATTAGTCCAGCTGTTCTTTTCATCATAGTG GTTTTGGCTGTTCTGTTTTTCATTTCTGGTCTGCTCCACCTGCTTGTTAGATTCCTCATAAAGCACCCATCTTCTTCTGC ATCTGCTCAATCCAACAGACACAATGAAATATCCACCTCTGATGCTCTTCAGAGACAGCTGCAGCAGCTCTTCCACCTCC ATGATTCTGGTTTAGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCAGTTCAAGGAGATTGTGGGTATGAAAGAGCAA TTTGACTGTGCTGTTTGCTTGTGTGAGTTTACTGAAAAGGATAAGCTCAGGTTGCTTCCTATGTGCAGCCATGCTTTTCA TATCAGTTGTATTGATACCTGGCTTTTGTCAAACTCCACTTGCCCTCTTTGTAGAGGAACCCTCATTGCTCCAGGGTTTT CTATTGATAACCCCATGTTTGATTTTGATGATCTGAGGGAAGATGATGATGTGGGAAATAGATTCAGTTCTAGACAGAAA ACAGTTGTTGTTGAAGAAACTGTAGAGAAAGAGAAAGAGAAAGGGGTTTTCCCTGTGAGGCTTGGTAAATTCAAAAAGGT GGATGTGGTGGAGGCTGGGGAGACTAATGGAGTTGGAGAAACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTACTCAA TGGGATCTTACCAGTATGTGGTTGGCAATTCAGAACTCAGGGTAGCCTTGAACCATCCAAGACTTACCAAAGGAACAGAA AATGCAGAGAGGCTTTCAGTGGAGGGGGATATGGAGGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTAT CTCCAAAATCTGGTTGTGGCCAAAGAAGGGAAATTTACATGGTTCTATGGAAGCTCAAGTGGGCATGTCATCTCATCTTA ATACTAACTTGAGGGAGATGAGGAAAACAGAAGGGGTATGA
Protein sequence (LotjaGi2g1v0249300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYPMWFFGHTHLKMAWVKHQIQQRDGYLNYPPPVLSSSSSSPYPGSVFHKEPMSSSYSTPPPPSSSSGTRISPAVLFIIV VLAVLFFISGLLHLLVRFLIKHPSSSASAQSNRHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGMKEQ FDCAVCLCEFTEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLIAPGFSIDNPMFDFDDLREDDDVGNRFSSRQK TVVVEETVEKEKEKGVFPVRLGKFKKVDVVEAGETNGVGETSSSNLDARRCYSMGSYQYVVGNSELRVALNHPRLTKGTE NAERLSVEGDMEAKKISSVSKGDSFSISKIWLWPKKGNLHGSMEAQVGMSSHLNTNLREMRKTEGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 73 | 73 | - | – | |
| PANTHER | 7 | 384 | 378 | 7.8E-141 | – | |
| PANTHER | 7 | 384 | 378 | 7.8E-141 | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 74 | 96 | 23 | - | – | |
| Phobius | 97 | 386 | 290 | - | – | |
| Gene3D | 138 | 210 | 73 | 1.5E-21 | ||
| SUPERFAMILY | 142 | 210 | 69 | 8.58E-21 | – | |
| CDD | 162 | 205 | 44 | 7.87937E-20 | – | |
| Pfam | 162 | 205 | 44 | 1.7E-12 | ||
| SMART | 163 | 204 | 42 | 1.8E-6 | ||
| ProSiteProfiles | 163 | 205 | 43 | 12.371 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0249300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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