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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0256000 |
| Transcript ID | LotjaGi2g1v0256000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72245714..72249744) extracted from Lotus japonicus Gifu genome v1.2.
AACAGTAAAATAAAGAAGAGCATACTAATAGGCAAAACAAAGTCAAATAAAAAACGTAAGTATATATATTTAGCATCAGA CATAACGCACAAAAGATAAAACCTCAACACATAATACTAACACCAAATTTTATCTTTAGCAACAACATATCCGTTGAAAT TTCATTTGCACACACTGCATTGTTCTGTGTCTCGTCTCGCTATCCATCTAACAACTCAGTCTCTCAATGTTGCTTCATCA CTGCTCTTGTTCCCTGTTCAATTCCCCAAATCCAAAACCCGACCCACCAATTTCATCATCCGGAGCTCCGCCTCCGACAC CCAAACCCGAACTCTCCAACGGCTTCACCGACCAACCACCCGCCTCCACCTCCACCTCCACCTCTACTCCCTCCTCCGCT TCCGGGCACGGGAATCGCGCGAATGAGTTGGAGAAGCAGCGGAAGGAGAGAAGAAGAAAGAGGGGAAAGTGCCGACGCTA GCGGAGCTGAGATAATGAGGTTGACGACGCTAGGGTTTCAGATGAAGGTTGGGAAGGCGGGGATCACCGAAGGGATCGTT AACGGGATTCACGAGCGGTGGTGAGGATTGTTTGTGATGATATTTGCAGGATTAACATGAAAAGGACTCATGACTTGTTG GAGGTAACACAACAAAAGAATGAGAATTTTATTTTTATTTATTTATTTGCTATTTGGATTGGATAGATACTAATCAATGA AATTGGGTTGTTACTTGTTACTGTGAGAATTGGAACCGACTTTAGTGCACAACAAGAAAGCTTAGACACCTCAATTCCAA ATAATAGTCTTTGTATTGATTAATGTAGGAGACTTCATGTTCATGTATGCTTGGATCCTTCTGGTTGTATGTTGTAATTT TGTGTCTTGCGTCCGGTTTTTGAACTTTATATCAATGTATTGATCAAAGTATCACAATAATGAGGTATAGGATAACAATG TATTATATCTATCATGACTGAAGTTAGCTTTAAAAATATTGATGGTCTCATCTGCAGCTGCAGTGCTTTTATTTTACTTT TGTGTTTTATTATATTTTTTATGTTTTGCATTATACTCATGATTGCATTGTGTTGTATCCATGTCTCTTGTTATGTTTAG GCTTTGTAAGTGGACATATATTATGAAAGCGTTTCTCTTTATATTTTTTTAATATTTTGTGCTAATTAAAATCCTTGAGA TGTCCTTCAAAACTGTGAGTAGTTGTAGAAAATCCTATGTAGGACAAAACTGTGCGGCTCACTCTAAACTCGGAAGTTAC TAAATTTGCATGCTGATTCTTTATGAACGAGTTTTCTGTCCATGATCAAGGGATTAGATTGACACTACTTTGTATGGCTT TGCAAGATGAGGGGGTCTAGTTGTTAAGGTGGCATTTGTTTCCAAGATAAACTATATTGTTTAATTTTTTTTTATCTATT TCCATATATAAATTATAAAAAAGTCTCCTTATTTTTACATGCTTTCTTGTTTCCAAGATATTATTGCTTTGTTCGGTTTA GGAGAGAAAGCGAGAAGAGAGAATGTGAGAAGAGAGAAAGCGGTGAGAAGCGAAGAGATTTATAGGTTGTTCGCTATAAT AGAAATAGAGAAGAGAAAGAATGAGCTGTTTGTTCTCTCCTTTTGTTTGGTTGGGTAGAGAATGAAAGAGATGAAGATTA CCTTTGTATGAAATGGCATCTCTCTCTCTCTCTCACACACACACACACATAACAAAAAAGGTGATGAGCTCTCTTTCGGC TGACTCTTTGTCTCGCCCCTATGTCTTGCCGTTTTCTTCTTTAACAAACGCAACATGTGAAAGAAACGGCAAAAACAAGA TTTTGTTGGTTTACCTGTTTTTATAACTATTAGTGAAAGTGTATTAACTGAAGACAAAACATAAAATATATCAAGTACCG CCTAAGTTTTCAACCACGGGAGGATTTCTTCTATCAACCAATAGTTGGAAGGGGTTATATGCATTTTGACCTATTCTTTC CTGCAATATGATTAGGGTGCCCTACGTATAATTTTCTGACTATAGCTTATAACACTGATTGTCAGAGAAAAACTGGAGGA CTTGTTGTTTGGAGATCGGGAAGTAAGATAATATTGTACAGAGGGACTGATTATAAGTATCCTTACTTCCTCTCAGATAC GGTTTCGAGAGATGAGCACATTGGTGATGCTGAGCAACATATGGATCGCAATGATGAAAATTGTGATGAAAGAGAGAGGC ACTCATCTGAAACAAACTCAGAAATATATGCTGGCCATAGTTCAAACTCCAAAACATCAAAACCAGCTTTGATACAAGGT GTTGGTACTCCAAATAAAGTACGATTTCAACTGCCAGGTGAGGCAGAGCTTGCAGAAGATGCAGACAGCTTATTAGTGGG GCTTGGGCCACGATTTACTGATTGGTGGGGGTATGAACCTCTGCCTGTCGATGCTGATCTTCTACCTGCTGTTGTTCCTG GATATAGGCAGCCTTTTCGCCTACTTCCATATGGTGTGAAGCCTAAACTGACGGATGATGAAATGACAACTTTGAGGAGA CTTAGCAGACCTATACCATCCCATTTCGCATTAGGTGAGTTTGTCTTGCTTTTTCTTATCTGTCATTGTGACCAAAATTT AGTTCAATGGCTTTTTTTGTTCTTTTGTTTTACAGGTAGAAACAGGAAACTTCAAGGATTGGCTGCTGCAATTATTAAGC TTTGGGAAAGATGTGAGATTGTCAAGATTGCTGTAAAGAGAGGTGTGCAGAATACTAACAGCGAGATTATGGCTGAAGAG ATAAAGGTCTATTATTTATTTATTTGCTGATAATTTTCAAATTTAATCAAATTTAGCACTTATGGTTCAATATTTTGATA AATAGAAGTGCCTGTCATAGAATACACCTGCTCTTTTGGGTGCCATATGTTGTGGATGAATGAAATGAAACTACTGCAGT TAACTACTATTTATCATCAAGGTCATTTGTACATTGTTTGGGAACATTAGCAAGGATATTTGGCCTTGGAAGGTAATTAA ATTCACATAATTGTTGCCAATATTATGTTTTTATGTTCATGCTGGTGGCTGAAATGGAGTACCTTGAACACTGGCATTAA AGAAAATAATCTCTGATTCACATCATTATATAACGTCTGATTCACACCATTAATACAAGGATCTAGATACCATGTTGAGA GAGAAGAAATGAGAGACATGACGGAATCTGTGTGTGTCAATTGGATAGTGGAGTATAATATATATACTAAAGAGTCATTA ATACAAGGATTTACATTTATCCTTATTACTATAATCAGAATAATATACAACACCTGATCAATACCTAATCATGCTTTGTA ACACCATACATATGGACGTATCCAACTAATCATGCTTTGTAAAGATCAAGAATACAGTACGATCTATACTTGACATTGTG TATTTATCTGTACCCTACCAGTCTTTTGTCTCCTGGGCTTTCAACGATCTCCCATCTTCCATTCTTTTCTTGTGATTTTA TTTCCTCATTCATGGCTTGAACCCAATTCTTATCTTCTAATGCCTCTTGTACTAATGTTGAGATTTTGGTCAAGTCAACG GCTGAAATGAAATTTTGGTGTTGCAAAGATGTCAAGAGACAAATTGAGAAACAGGGCACTTTGCACAGGATTTTTTTTCC TTTTCCTTAAAGCAATTGATAAGCCATCGGAGTCAGAATTAGAAATATGAGAGGCAGTCTTCTTTATTTCCTTAATTTGA GGTGACTAATTTTTAGGTGTCATTTCCATGATTTATTGTTTTCATTTCCTAATTTATTGAGTCAACAATATGGACCAATA ACAATCAAACATGTGGAAATTCAATGTGAGAACCAATAGGTAAAAAATATGTGGCATTTTTTATTATTTATTGAGTCATT AATATTGACCAATGAAAATTCATCAATATGGACCAACCAATAACTTACATTTGGAAAATCATTGTAACAACCAATAGGAG AAAAACATGTGGCATTTAGGTTTGCAATATG
CDS sequence (LotjaGi2g1v0256000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGGACTCATGACTTGTTGGAGAGAAAAACTGGAGGACTTGTTGTTTGGAGATCGGGAAGTAAGATAATATTGTA CAGAGGGACTGATTATAAGTATCCTTACTTCCTCTCAGATACGGTTTCGAGAGATGAGCACATTGGTGATGCTGAGCAAC ATATGGATCGCAATGATGAAAATTGTGATGAAAGAGAGAGGCACTCATCTGAAACAAACTCAGAAATATATGCTGGCCAT AGTTCAAACTCCAAAACATCAAAACCAGCTTTGATACAAGGTGTTGGTACTCCAAATAAAGTACGATTTCAACTGCCAGG TGAGGCAGAGCTTGCAGAAGATGCAGACAGCTTATTAGTGGGGCTTGGGCCACGATTTACTGATTGGTGGGGGTATGAAC CTCTGCCTGTCGATGCTGATCTTCTACCTGCTGTTGTTCCTGGATATAGGCAGCCTTTTCGCCTACTTCCATATGGTGTG AAGCCTAAACTGACGGATGATGAAATGACAACTTTGAGGAGACTTAGCAGACCTATACCATCCCATTTCGCATTAGGTAG AAACAGGAAACTTCAAGGATTGGCTGCTGCAATTATTAAGCTTTGGGAAAGATGTGAGATTGTCAAGATTGCTGTAAAGA GAGGTGTGCAGAATACTAACAGCGAGATTATGGCTGAAGAGATAAAGGTCTATTATTTATTTATTTGCTGA
Protein sequence (LotjaGi2g1v0256000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMDRNDENCDERERHSSETNSEIYAGH SSNSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRQPFRLLPYGV KPKLTDDEMTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEIKVYYLFIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 38 | 38 | 7.59E-8 | ||
| ProSiteProfiles | 1 | 39 | 39 | 9.743 | ||
| Pfam | 1 | 28 | 28 | 7.3E-8 | ||
| PANTHER | 1 | 229 | 229 | 7.5E-129 | – | |
| PANTHER | 1 | 229 | 229 | 7.5E-129 | – | |
| MobiDBLite | 52 | 73 | 22 | - | – | |
| MobiDBLite | 52 | 93 | 42 | - | – | |
| MobiDBLite | 74 | 93 | 20 | - | – | |
| ProSiteProfiles | 162 | 236 | 75 | 12.149 | ||
| Pfam | 164 | 230 | 67 | 3.4E-8 | ||
| SUPERFAMILY | 164 | 229 | 66 | 6.8E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi2g1v0256000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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