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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0256000 |
| Transcript ID | LotjaGi2g1v0256000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72245837..72248748) extracted from Lotus japonicus Gifu genome v1.2.
CAAATTTTATCTTTAGCAACAACATATCCGTTGAAATTTCATTTGCACACACTGCATTGTTCTGTGTCTCGTCTCGCTAT CCATCTAACAACTCAGTCTCTCAATGTTGCTTCATCACTGCTCTTGTTCCCTGTTCAATTCCCCAAATCCAAAACCCGAC CCACCAATTTCATCATCCGGAGCTCCGCCTCCGACACCCAAACCCGAACTCTCCAACGGCTTCACCGACCAACCACCCGC CTCCACCTCCACCTCCACCTCTACTCCCTCCTCCGCTTCCGGGCACGGGAATCGCGCGAATGAGTTGGAGAAGCAGCGGA AGGAGAGAAGAAGAAAGAGGGGAAAGTGCCGACGCTAGCGGAGCTGAGATAATGAGGTTGACGACGCTAGGGTTTCAGAT GAAGGTTGGGAAGGCGGGGATCACCGAAGGGATCGTTAACGGGATTCACGAGCGGTGGTGAGGATTGTTTGTGATGATAT TTGCAGGATTAACATGAAAAGGACTCATGACTTGTTGGAGGTAACACAACAAAAGAATGAGAATTTTATTTTTATTTATT TATTTGCTATTTGGATTGGATAGATACTAATCAATGAAATTGGGTTGTTACTTGTTACTGTGAGAATTGGAACCGACTTT AGTGCACAACAAGAAAGCTTAGACACCTCAATTCCAAATAATAGTCTTTGTATTGATTAATGTAGGAGACTTCATGTTCA TGTATGCTTGGATCCTTCTGGTTGTATGTTGTAATTTTGTGTCTTGCGTCCGGTTTTTGAACTTTATATCAATGTATTGA TCAAAGTATCACAATAATGAGGTATAGGATAACAATGTATTATATCTATCATGACTGAAGTTAGCTTTAAAAATATTGAT GGTCTCATCTGCAGCTGCAGTGCTTTTATTTTACTTTTGTGTTTTATTATATTTTTTATGTTTTGCATTATACTCATGAT TGCATTGTGTTGTATCCATGTCTCTTGTTATGTTTAGGCTTTGTAAGTGGACATATATTATGAAAGCGTTTCTCTTTATA TTTTTTTAATATTTTGTGCTAATTAAAATCCTTGAGATGTCCTTCAAAACTGTGAGTAGTTGTAGAAAATCCTATGTAGG ACAAAACTGTGCGGCTCACTCTAAACTCGGAAGTTACTAAATTTGCATGCTGATTCTTTATGAACGAGTTTTCTGTCCAT GATCAAGGGATTAGATTGACACTACTTTGTATGGCTTTGCAAGATGAGGGGGTCTAGTTGTTAAGGTGGCATTTGTTTCC AAGATAAACTATATTGTTTAATTTTTTTTTATCTATTTCCATATATAAATTATAAAAAAGTCTCCTTATTTTTACATGCT TTCTTGTTTCCAAGATATTATTGCTTTGTTCGGTTTAGGAGAGAAAGCGAGAAGAGAGAATGTGAGAAGAGAGAAAGCGG TGAGAAGCGAAGAGATTTATAGGTTGTTCGCTATAATAGAAATAGAGAAGAGAAAGAATGAGCTGTTTGTTCTCTCCTTT TGTTTGGTTGGGTAGAGAATGAAAGAGATGAAGATTACCTTTGTATGAAATGGCATCTCTCTCTCTCTCTCACACACACA CACACATAACAAAAAAGGTGATGAGCTCTCTTTCGGCTGACTCTTTGTCTCGCCCCTATGTCTTGCCGTTTTCTTCTTTA ACAAACGCAACATGTGAAAGAAACGGCAAAAACAAGATTTTGTTGGTTTACCTGTTTTTATAACTATTAGTGAAAGTGTA TTAACTGAAGACAAAACATAAAATATATCAAGTACCGCCTAAGTTTTCAACCACGGGAGGATTTCTTCTATCAACCAATA GTTGGAAGGGGTTATATGCATTTTGACCTATTCTTTCCTGCAATATGATTAGGGTGCCCTACGTATAATTTTCTGACTAT AGCTTATAACACTGATTGTCAGAGAAAAACTGGAGGACTTGTTGTTTGGAGATCGGGAAGTAAGATAATATTGTACAGAG GGACTGATTATAAGTATCCTTACTTCCTCTCAGATACGGTTTCGAGAGATGAGCACATTGGTGATGCTGAGCAACATATG GATCGCAATGATGAAAATTGTGATGAAAGAGAGAGGCACTCATCTGAAACAAACTCAGAAATATATGCTGGCCATAGTTC AAACTCCAAAACATCAAAACCAGCTTTGATACAAGGTGTTGGTACTCCAAATAAAGTACGATTTCAACTGCCAGGTGAGG CAGAGCTTGCAGAAGATGCAGACAGCTTATTAGTGGGGCTTGGGCCACGATTTACTGATTGGTGGGGGTATGAACCTCTG CCTGTCGATGCTGATCTTCTACCTGCTGTTGTTCCTGGATATAGGCAGCCTTTTCGCCTACTTCCATATGGTGTGAAGCC TAAACTGACGGATGATGAAATGACAACTTTGAGGAGACTTAGCAGACCTATACCATCCCATTTCGCATTAGGTGAGTTTG TCTTGCTTTTTCTTATCTGTCATTGTGACCAAAATTTAGTTCAATGGCTTTTTTTGTTCTTTTGTTTTACAGGTAGAAAC AGGAAACTTCAAGGATTGGCTGCTGCAATTATTAAGCTTTGGGAAAGATGTGAGATTGTCAAGATTGCTGTAAAGAGAGG TGTGCAGAATACTAACAGCGAGATTATGGCTGAAGAGATAAAGGTCTATTATTTATTTATTTGCTGATAATTTTCAAATT TAATCAAATTTAGCACTTATGGTTCAATATTTTGATAAATAGAAGTGCCTGTCATAGAATACACCTGCTCTTTTGGGTGC CATATGTTGTGGATGAATGAAATGAAACTACTGCAGTTAACTACTATTTATCATCAAGGTCATTTGTACATTGTTTGGGA ACATTAGCAAGGATATTTGGCCTTGGAAGGTA
CDS sequence (LotjaGi2g1v0256000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGGACTCATGACTTGTTGGAGAGAAAAACTGGAGGACTTGTTGTTTGGAGATCGGGAAGTAAGATAATATTGTA CAGAGGGACTGATTATAAGTATCCTTACTTCCTCTCAGATACGGTTTCGAGAGATGAGCACATTGGTGATGCTGAGCAAC ATATGGATCGCAATGATGAAAATTGTGATGAAAGAGAGAGGCACTCATCTGAAACAAACTCAGAAATATATGCTGGCCAT AGTTCAAACTCCAAAACATCAAAACCAGCTTTGATACAAGGTGTTGGTACTCCAAATAAAGTACGATTTCAACTGCCAGG TGAGGCAGAGCTTGCAGAAGATGCAGACAGCTTATTAGTGGGGCTTGGGCCACGATTTACTGATTGGTGGGGGTATGAAC CTCTGCCTGTCGATGCTGATCTTCTACCTGCTGTTGTTCCTGGATATAGGCAGCCTTTTCGCCTACTTCCATATGGTGTG AAGCCTAAACTGACGGATGATGAAATGACAACTTTGAGGAGACTTAGCAGACCTATACCATCCCATTTCGCATTAGGTGA GTTTGTCTTGCTTTTTCTTATCTGTCATTGTGACCAAAATTTAGTTCAATGGCTTTTTTTGTTCTTTTGTTTTACAGGTA GAAACAGGAAACTTCAAGGATTGGCTGCTGCAATTATTAAGCTTTGGGAAAGATGTGAGATTGTCAAGATTGCTGTAAAG AGAGGTGTGCAGAATACTAACAGCGAGATTATGGCTGAAGAGATAAAGGTCTATTATTTATTTATTTGCTGA
Protein sequence (LotjaGi2g1v0256000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMDRNDENCDERERHSSETNSEIYAGH SSNSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRQPFRLLPYGV KPKLTDDEMTTLRRLSRPIPSHFALGEFVLLFLICHCDQNLVQWLFLFFCFTGRNRKLQGLAAAIIKLWERCEIVKIAVK RGVQNTNSEIMAEEIKVYYLFIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 38 | 38 | 8.89E-8 | ||
| Pfam | 1 | 28 | 28 | 8.4E-8 | ||
| PANTHER | 1 | 186 | 186 | 2.0E-122 | – | |
| ProSiteProfiles | 1 | 39 | 39 | 9.743 | ||
| PANTHER | 1 | 186 | 186 | 2.0E-122 | – | |
| MobiDBLite | 52 | 73 | 22 | - | – | |
| MobiDBLite | 52 | 93 | 42 | - | – | |
| MobiDBLite | 74 | 93 | 20 | - | – | |
| ProSiteProfiles | 162 | 263 | 102 | 9.144 | ||
| SUPERFAMILY | 210 | 256 | 47 | 1.26E-5 | ||
| PANTHER | 211 | 256 | 46 | 2.0E-122 | – | |
| PANTHER | 211 | 256 | 46 | 2.0E-122 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi2g1v0256000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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