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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0256600 |
| Transcript ID | LotjaGi2g1v0256600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT5G15100.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LFP6|PIN8_ARATH Auxin efflux carrier component 8; TrEMBL-Plants: tr|M9WUH6|M9WUH6_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0256600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72289474..72291808) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTTCCTTAGGTGATGTCTATCATGTAGTGACAGCCACTGTCCCATTATATGTGACCATGATACTAGCCTTCATCTC TGTAAAATGGTGGAAGCTCTTCACACCAGATCAATGTTCAGGCATAAATAAATTTGTGGCCAATTTCTCAATCCCACTGT TGTCATTCCAAGTGATTTCTTCTAACAATGTTTACAAAATGAGCCTCAAGCTCATATATGCAGATTGTATTCAGAAGTTG CTTGCAATTCTTGCCTTAACATTAATCATTAAGATCAGTGCTCGAGGCGGTTTAAAGTGGATCATAACCGGTCTATCATT GTCAACACTTCCTAATACTTTGATCCTGGGGATTCCACTCATGAAGGCTATGTATAAGGATGAAGCTGATGCTTTGCTTC CCCAGATTATTTTCTTGCAGAGCATGATCTGGTACAATTTGCTCTTGTTTCTTCACGAGCTCGATGCAGCCATTCCTGCA AGGACCATGCCAGCAACACCACCATCTCAAGGCACAGGTGTGGATTTAGATTTGGTTAATTTACATCTTAGACTTGGAAA TCCTTCTACAATTGACTCTGAAGCTAAAATTAATTCTAGAAAGAAACTTATGCGAGTAGCTTTCTGGGTGATGGAATTGA TTCTGATTAGTGAGAAGCTGATCCAAACATGTTGTTAGGGTGTGGCTGATATGAGTGAGAAAAGGTGGGAATTGGAGGAA TGAACAATGTTTCTTCATTTTTTACTCTGCCATTTTCACTCCAACTAGCAGTCTAGCACAACCTAAATCCAAAACTGATT TTGATTTTCTAGGGATTTGATGACCCTCTCTTCATTTTTAAATAATGTAAGCATATATAACTTCCACAGATTATTCTTGT TTAGTCAACTGAAGTAATCTATGACAATCTATCAAAGTGGGGTCAGAACATATTTTAAATTTCTCTGTTTTCTGTTCTTT TCTTTCTTTCTATCTTCATTTTGACTCTCAGAATAACTATTCCTCTTAAATGCAATTAAATATTGACAAATTGTCCTATT TGGTTCTGTGTCATTCTAATGTATGTCCTTCATCTATATGGTACAAGATTCAGATACAAATGTCACATAAAATCAATTTT AAGGTTGTATACATTACTTCAATTGAAGTGATGGCGTTTATGTTTTCTTCTCTTCTTGCTTTCTGCTTAAAGGAGAAAGT GAGACTTCTCAGGAGCTACAATCAAAAGAAGAGGAAGAAGCAGAACATAGACCAGGAAGGAAATTAAGGATCTTGCTCAT TCTTACAAAAGTGGGGAAGAAGTTGATCAAAAACCCTAATACCTATGCAACTTTTATTGGTCTTATTTGGTCCAGCATCC ACTTCAGGTGAGCACATTGGAAAGAGGAGAGTCACAAATCCTTATGGAACATTTGTTTTAACTCACTCAATACATTATAG GAGATTATTATTAGGATTCAATTCACCTAGCTCGGTCTCCTGGTTCACTGCGTGAACAATTATAATTCTTGATCATTGGA TCAGAAATAACGATAATTAACCTGTTGCAGGTGGGGAGTACATATGCCAGATGTTGTTAATCAGTCAATAACAATATTGT CAAGTGGAGGTCTAGGTATGGCAACTTTCAGCTTAGGTAAGAGAGTGGATTAATTGTTCCCTTTTATGAACTTTTTGAAC ATTATAATTGACTTCAAGCATTGAATTAGAAGGTCTTGTTCTTGAATGAAATTTTAACAGGTTTATTTATGGCATCAAAC TCCACCATTATAGCATGTGGGCCAAGAATGACAATGGTGGCAATAGGACTTAAATTTCTTGTTGGGCCTGCCCTAATGGC TGTAGCTTCAATTGTGATTGGATTAAGAGATACAATGCTCAAAGTGGCAATTGTTCAGGTAATTTTTTCTTTCTGTATTC CTGTTCAGGTCATGGAAGGTTACATTGTTTGGTTTTCACGTATGTATTTGGAGTCTCTCATTGTTTAAGAAATTTAAGAT CTGGTGTTAGGTTCTCTTGGTCTTGGAGGTCCATGGTGTTCAAGCTCTCTTGTTTTTGGCTCCCTCTTTCTCCTTAACAT ATTTATGATATGATTTTGCTTGTGCAGGCAGCTCTACCCCAAGGAATAGTTCCTTTTGTTTTTGCCAGAGAGTACAATGT CCATCCAGCCATTTTAAGCACTGGGTAAGCACTACTTCAAAATCATATCTTTGATAATCTTTGCATATATAGGCCTGTGT TTAGATGCTGCTCTTGTTTTGGTCACAGGGTCTTACTGGGAATGCTCATTGCCTTGCCAGTGGCGCTCACCTACTACGTC CTCTTAGCACTGTGA
CDS sequence (LotjaGi2g1v0256600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCCTTAGGTGATGTCTATCATGTAGTGACAGCCACTGTCCCATTATATGTGACCATGATACTAGCCTTCATCTC TGTAAAATGGTGGAAGCTCTTCACACCAGATCAATGTTCAGGCATAAATAAATTTGTGGCCAATTTCTCAATCCCACTGT TGTCATTCCAAGTGATTTCTTCTAACAATGTTTACAAAATGAGCCTCAAGCTCATATATGCAGATTGTATTCAGAAGTTG CTTGCAATTCTTGCCTTAACATTAATCATTAAGATCAGTGCTCGAGGCGGTTTAAAGTGGATCATAACCGGTCTATCATT GTCAACACTTCCTAATACTTTGATCCTGGGGATTCCACTCATGAAGGCTATGTATAAGGATGAAGCTGATGCTTTGCTTC CCCAGATTATTTTCTTGCAGAGCATGATCTGGTACAATTTGCTCTTGTTTCTTCACGAGCTCGATGCAGCCATTCCTGCA AGGACCATGCCAGCAACACCACCATCTCAAGGAGAAAGTGAGACTTCTCAGGAGCTACAATCAAAAGAAGAGGAAGAAGC AGAACATAGACCAGGAAGGAAATTAAGGATCTTGCTCATTCTTACAAAAGTGGGGAAGAAGTTGATCAAAAACCCTAATA CCTATGCAACTTTTATTGGTCTTATTTGGTCCAGCATCCACTTCAGGTGGGGAGTACATATGCCAGATGTTGTTAATCAG TCAATAACAATATTGTCAAGTGGAGGTCTAGGTATGGCAACTTTCAGCTTAGGTTTATTTATGGCATCAAACTCCACCAT TATAGCATGTGGGCCAAGAATGACAATGGTGGCAATAGGACTTAAATTTCTTGTTGGGCCTGCCCTAATGGCTGTAGCTT CAATTGTGATTGGATTAAGAGATACAATGCTCAAAGTGGCAATTGTTCAGGCAGCTCTACCCCAAGGAATAGTTCCTTTT GTTTTTGCCAGAGAGTACAATGTCCATCCAGCCATTTTAAGCACTGGGGTCTTACTGGGAATGCTCATTGCCTTGCCAGT GGCGCTCACCTACTACGTCCTCTTAGCACTGTGA
Protein sequence (LotjaGi2g1v0256600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISLGDVYHVVTATVPLYVTMILAFISVKWWKLFTPDQCSGINKFVANFSIPLLSFQVISSNNVYKMSLKLIYADCIQKL LAILALTLIIKISARGGLKWIITGLSLSTLPNTLILGIPLMKAMYKDEADALLPQIIFLQSMIWYNLLLFLHELDAAIPA RTMPATPPSQGESETSQELQSKEEEEAEHRPGRKLRILLILTKVGKKLIKNPNTYATFIGLIWSSIHFRWGVHMPDVVNQ SITILSSGGLGMATFSLGLFMASNSTIIACGPRMTMVAIGLKFLVGPALMAVASIVIGLRDTMLKVAIVQAALPQGIVPF VFAREYNVHPAILSTGVLLGMLIALPVALTYYVLLAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 357 | 357 | 7.3E-100 | ||
| PANTHER | 1 | 357 | 357 | 1.9E-198 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 357 | 357 | 1.9E-198 | – | |
| Phobius | 7 | 28 | 22 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Pfam | 9 | 189 | 181 | 3.2E-47 | ||
| Phobius | 29 | 70 | 42 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 71 | 90 | 20 | - | – | |
| Phobius | 91 | 96 | 6 | - | – | |
| Phobius | 97 | 120 | 24 | - | – | |
| TMHMM | 100 | 121 | 22 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 132 | 151 | 20 | - | – | |
| Phobius | 152 | 212 | 61 | - | – | |
| MobiDBLite | 162 | 189 | 28 | - | – | |
| Pfam | 196 | 352 | 157 | 3.0E-59 | ||
| Phobius | 213 | 230 | 18 | - | – | |
| TMHMM | 215 | 232 | 18 | - | – | |
| Phobius | 231 | 241 | 11 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 242 | 262 | 21 | - | – | |
| Phobius | 263 | 273 | 11 | - | – | |
| Phobius | 274 | 297 | 24 | - | – | |
| TMHMM | 277 | 299 | 23 | - | – | |
| Phobius | 298 | 302 | 5 | - | – | |
| Phobius | 303 | 323 | 21 | - | – | |
| Phobius | 324 | 329 | 6 | - | – | |
| Phobius | 330 | 354 | 25 | - | – | |
| TMHMM | 332 | 354 | 23 | - | – | |
| Phobius | 355 | 357 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0256600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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