Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0256700 |
| Transcript ID | LotjaGi2g1v0256700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT5G15110.1 Pectate lyase family protein; Swiss-Prot: sp|Q9M9S2|PLY3_ARATH Probable pectate lyase 3; TrEMBL-Plants: tr|I1N629|I1N629_SOYBN Pectate lyase; Found in the gene: LotjaGi2g1v0256700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72294038..72297090) extracted from Lotus japonicus Gifu genome v1.2.
TATGTTAAGGGCCAAACAAACTTGGTTTTAATTGGTATAGCCTTGCCAAGGTCTTGTTGATTTTGTGCTTAACTAATTCC AAGACCTTGGTTAAAAAAATAAAATTTGATATAAAAGGGGATAAGCAGGGAAAAGGATAGAGAAAAAAAAAAACAAAGAA GAAAGAAATGGGCATGGGAGAAATAATGGCAGGAAGTGCAACTAAGGTTGCATTTATAGTCTTGGTAACTTTCTCCATTA CCATTCCATGCCTTGTTGAGGCTGGCATTGCTGAGTTTGATGATTTTCTTAAAGAACAAGCTGATGAAGCCTATCAAATT GCTCTTGCTTCCTATGTGCCAAAGCCTGAAGAAGTTGCAGCTGAGCTTAACCTACACGTTCATTTGTAAGTACCAATACT AATTCTTCTTACATTCAAACGTGCTATTCATTTTGATCTTTGTTCAATTGACTATAGTTTTTCCAAATTCAAGTTTGTTC TTGAATAAGCATGAGAATAAACATTCATCTATTCAACATCAATTATTCATACATGTTAAGTTTTATTTAAATTTTTGAAA GAGAAATGATAAAAAGCACATTCACAATTTGTTTAAGGACACATTTGAACTAACTTTTAGTTTTAAAAAAGTTTCATTTG TATGGAATGTAAGATAGGACATCTCGTTATTGATTGTAACACAAAAATGAATTATGATTTTCTAAAGTGAAACATTGTAT TTATACACCTCTTTACAAATATTCAACGTGTCTCGCATATTTAATAAGTATGAAGAGACAATAACTACAAAATTTCAACC TCGACAAAACTAAAGAAAGTTTGCGCGAGAGAATTTAGATCATTGCAAAACATGTAGTAATTCATATCATTATTTTTTTT GTTCTTCTTCTGAAAATATGTTTAAAATGGATTTAATATATATGCACTTACAATGTAAAACTTCTTTAAACTAACATACA ATGATTTCACATTGACATCAAATGATAGTTTGCCACGTTAGAAGTAAATAATGTAACAGTTTAAAATGGTGTGACATAAA TAATTGAAGGTTAATGTAAAGAAGTTCTATACCTACATAAAAATAATACTCTTATTACTAATAAAATATTAATCTAGTGA TAAGTAAGCTAGTTTCTCATAAAGATAAGATTTAAATAAAAATATTAAATAAAAACTCTTATTTCCTTATGTGTAGGGCG TTGGAGCAGACAAACGACACAAGGAGGGAGCTAAGGCAGCGAGGAGGAGGAGGAGGACGCCGCGGAAGAGGAAAACGCTG CGTCGCCACCAACCCCATCGACAAATGCTGGCGCTGCCGCAAAGACTGGGCCAACGACCGCTTCCGCCTCGCCAAGTGCG GCAAAGGCTTCGGCCGACGCGCCACCGGCGGCCTCGGCGGCCCAATCTACGTCGTCACCGACTCCTCCGACAACGACATG GTCAACCCAAAGCCCGGAACCCTCCGCTACGGCGTCGTCCAGAAAGGCCCACTGTGGATCATCTTCCAACGCAACATGGT CATCACGTTGAACCAGGAGCTTCTGGTTTCCTCCGACAAAACCATCGATGGCCGCGGCGCCAACGTTCAGATTCGCGACG GCGCCGGGATTACCATGCAGTTTGTGAACAATGTCATCATCCACGGGCTTCGCATCAAGAATGTGAAGTCTAAGCCTGGT GGTATGATGAGGGATTCTTGGAACCATGTTGGAACGAGAACAAGGAGTGATGGTGATGCTATCTCGATTTTTGGATCGTC GAACATTTGGGTTGATCATATTTCCATGTCTGATTGTGAGGATGGTCTTGTTGATGTTATTCAGGGTTCTACTGCAGTCA CCATTTCGAATTGTCACATGACTAAGCATAACGATGTGAGTGAGGATTTTTGTGCAGATGAGGTGTTTGTGAAAATGTGT CATTGAAATAGTACTAACGGAAATGAAATGTTGATGGTGTTTGATGCAGGTGATGCTGTTTGGAGCTAGCGATTCGTACA ACGGGGATAAGATTATGCAGGTGACGTTGGCGTTCAACCACTTCGGTCAAGGGTTGATTCAGAGGATGCCGAGGTGTAGG TGGGGTTTTGTTCATGTTTTGAACAATGACTATACTCATTGGATGATGTATGCGATTGGTGGTAGCTCGGGGCCGACGAT TTTGAGCCAGGGGAATCGTTTCATTGCTCCGAACAATGATGCTGCCAAGGTGATCACGCACAGGGACTATGCAGGACCTG ATGTGTGGAAGCATTGGCAGTGGCAATCGGAGATGGACCTGTTCATGAATGGTGCTAAGTTTATTCCTTCAGGGGCGCCG ATTAGTAGGGGTTCGTTCAAGAAAGGGTTGATGATGAAACCAAGAGATGGGTCTCATGTCAGCAGGCTAACAAAGAATGC TGGTGCCCTTCCTTGCAGGGTAGGCAAGCCTTGTTAGAAATTTGTATATTATATCATTGTATTTTGTTTTGTTTTGTTTT GTTTATAATTAACACACACCTTGTAGAAGATATGGCAATCCTCTAGTTATAGGATGAAGTGGCACTATGTTTAGGGGGAT GAATATTGTACATTTACCTTCTACAGTAAACATGTTGTGACCTTCTGAGAGAAACAAAAAGAGAAGTTGTTTCTTAGATT CAGATGATAAGAAATAAGATGAAAAAGTTTCAAATTATTTGTAAATTTGTTTATTGGTACTTTGCTTTCACACACTGACA CACACACGTCTTGTTTGGATTTTAACTCATGAATGTTTTGTTGTGTCAAAGTTGGGTACTCATTCAAGTCTCACATCAAG CAGTGTGAAGAAAAAAGAAGTAGGAAGTTAGTTTTAGTTTTCTTCATCACCACAACTCTAGTCCTTTGGGAGTATTGGGG TTTTGGATAGTTGTGGTTTATTTAGAGAGTTTCCAATTTTCTCCTTGTAAAAATTGCATTGAGAGGGTTTGCAAGTGCTT CTAATGGGTGTGCTTCTCCAACTATCCTCTTGTTCCCAACATGTTTGAGGTATTATCATTAAGAAAAACTAAATGCATTT GGTTGCTTGGTGG
CDS sequence (LotjaGi2g1v0256700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCATGGGAGAAATAATGGCAGGAAGTGCAACTAAGGTTGCATTTATAGTCTTGGTAACTTTCTCCATTACCATTCC ATGCCTTGTTGAGGCTGGCATTGCTGAGTTTGATGATTTTCTTAAAGAACAAGCTGATGAAGCCTATCAAATTGCTCTTG CTTCCTATGTGCCAAAGCCTGAAGAAGTTGCAGCTGAGCTTAACCTACACGTTCATTTGGCGTTGGAGCAGACAAACGAC ACAAGGAGGGAGCTAAGGCAGCGAGGAGGAGGAGGAGGACGCCGCGGAAGAGGAAAACGCTGCGTCGCCACCAACCCCAT CGACAAATGCTGGCGCTGCCGCAAAGACTGGGCCAACGACCGCTTCCGCCTCGCCAAGTGCGGCAAAGGCTTCGGCCGAC GCGCCACCGGCGGCCTCGGCGGCCCAATCTACGTCGTCACCGACTCCTCCGACAACGACATGGTCAACCCAAAGCCCGGA ACCCTCCGCTACGGCGTCGTCCAGAAAGGCCCACTGTGGATCATCTTCCAACGCAACATGGTCATCACGTTGAACCAGGA GCTTCTGGTTTCCTCCGACAAAACCATCGATGGCCGCGGCGCCAACGTTCAGATTCGCGACGGCGCCGGGATTACCATGC AGTTTGTGAACAATGTCATCATCCACGGGCTTCGCATCAAGAATGTGAAGTCTAAGCCTGGTGGTATGATGAGGGATTCT TGGAACCATGTTGGAACGAGAACAAGGAGTGATGGTGATGCTATCTCGATTTTTGGATCGTCGAACATTTGGGTTGATCA TATTTCCATGTCTGATTGTGAGGATGGTCTTGTTGATGTTATTCAGGGTTCTACTGCAGTCACCATTTCGAATTGTCACA TGACTAAGCATAACGATGTGATGCTGTTTGGAGCTAGCGATTCGTACAACGGGGATAAGATTATGCAGGTGACGTTGGCG TTCAACCACTTCGGTCAAGGGTTGATTCAGAGGATGCCGAGGTGTAGGTGGGGTTTTGTTCATGTTTTGAACAATGACTA TACTCATTGGATGATGTATGCGATTGGTGGTAGCTCGGGGCCGACGATTTTGAGCCAGGGGAATCGTTTCATTGCTCCGA ACAATGATGCTGCCAAGGTGATCACGCACAGGGACTATGCAGGACCTGATGTGTGGAAGCATTGGCAGTGGCAATCGGAG ATGGACCTGTTCATGAATGGTGCTAAGTTTATTCCTTCAGGGGCGCCGATTAGTAGGGGTTCGTTCAAGAAAGGGTTGAT GATGAAACCAAGAGATGGGTCTCATGTCAGCAGGCTAACAAAGAATGCTGGTGCCCTTCCTTGCAGGGTAGGCAAGCCTT GTTAG
Protein sequence (LotjaGi2g1v0256700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGMGEIMAGSATKVAFIVLVTFSITIPCLVEAGIAEFDDFLKEQADEAYQIALASYVPKPEEVAAELNLHVHLALEQTND TRRELRQRGGGGGRRGRGKRCVATNPIDKCWRCRKDWANDRFRLAKCGKGFGRRATGGLGGPIYVVTDSSDNDMVNPKPG TLRYGVVQKGPLWIIFQRNMVITLNQELLVSSDKTIDGRGANVQIRDGAGITMQFVNNVIIHGLRIKNVKSKPGGMMRDS WNHVGTRTRSDGDAISIFGSSNIWVDHISMSDCEDGLVDVIQGSTAVTISNCHMTKHNDVMLFGASDSYNGDKIMQVTLA FNHFGQGLIQRMPRCRWGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAPNNDAAKVITHRDYAGPDVWKHWQWQSE MDLFMNGAKFIPSGAPISRGSFKKGLMMKPRDGSHVSRLTKNAGALPCRVGKPC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| SignalP_EUK | 1 | 32 | 32 | - | – | |
| PANTHER | 3 | 454 | 452 | 1.0E-270 | – | |
| PANTHER | 3 | 454 | 452 | 1.0E-270 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 14 | 24 | 11 | - | – | |
| Phobius | 25 | 32 | 8 | - | – | |
| Phobius | 33 | 454 | 422 | - | – | |
| Pfam | 34 | 85 | 52 | 2.3E-13 | ||
| SUPERFAMILY | 85 | 449 | 365 | 1.21E-93 | ||
| Gene3D | 104 | 447 | 344 | 8.0E-118 | ||
| PRINTS | 127 | 144 | 18 | 8.6E-81 | ||
| PRINTS | 151 | 176 | 26 | 8.6E-81 | ||
| SMART | 179 | 376 | 198 | 1.4E-98 | ||
| PRINTS | 187 | 203 | 17 | 8.6E-81 | ||
| Pfam | 188 | 370 | 183 | 8.8E-24 | ||
| PRINTS | 251 | 272 | 22 | 8.6E-81 | ||
| PRINTS | 331 | 350 | 20 | 8.6E-81 | ||
| PRINTS | 353 | 372 | 20 | 8.6E-81 | ||
| PRINTS | 395 | 419 | 25 | 8.6E-81 | ||
| PRINTS | 425 | 448 | 24 | 8.6E-81 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectate lyase activity | Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. |
Expression pattern of LotjaGi2g1v0256700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…