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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0257200 |
| Transcript ID | LotjaGi2g1v0257200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD40 repeat-like protein; TAIR: AT5G25150.1 TBP-associated factor 5; Swiss-Prot: sp|Q93794|SEL10_CAEEL F-box/WD repeat-containing protein sel-10; TrEMBL-Plants: tr|A0A0L9VNP9|A0A0L9VNP9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0257200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72320860..72328079) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGTATTCAAAACACAATTCGCCTTTCCCCCATTCATTCAGTCTCATAATTATAATTCTAGGGTCTAATGGCGGGCC CGTCACCGCCACCGTCACAGTCGCCATCACCGGCGGCAACCACCATAACCGATCTGAACGACGACACCTTTGCTCACTGC GCCTCCTTCCTCAACCCCCGCGACGTGTGCAGTCTGGCGATGACCTCCACTGCCCTCAACCGCCTCGCCTATTCCGATTC CATTTGGCAACGCTTCTTCACGTAGCAATCCTCTTCAATTCCATTCATCAATTCGGATTCTCTCTTTTCACTTTCCCCAT TTTCATTGAACTGAAATTCTTGTTGCAGGGAGCGCTGGCAGCATGAAATACCTCGCGCCTCTCCTTCGCATTGGAGTGGA AATGGAGCCAGGGAACTGTACCTGGCTAGGCACACCGAGTTGCAACAGTTCAAGTTCTTTGACCCTTTCATTCTCGACAT TCACTTGCAACCAAAACCTTTCACACAGTTGCTCCTCCATGAAAACTATGCTTACTCCGTGCAGGTGGGTGAGTGTTTTG ACTGTTTTCTTTTTTCGGGTTAACCGTGGTCAAATTAGTCGCTGATTTTGATTGTAGTTACTCGGCGGAAAAATAATGTT TAGTAGCGGTCATTTTTATAATTATTGGCTGTTCTTACTGTCATTAAATGCCATTTTTCCGCCAAAGGACTAAAATCAAA CTCGTTTATAAAATTAGGGACTAATTTGACTGTTTACTTTTTTTCCCGGTACATGTATTGGACATGGTAAAACCTGATGT AGAATGTGCTAGCAAAGCTGTAGAAAGAGTTGAGCCAGTTAGTTAGCCTAACTATAGTTGGAGTTGTTAGTTAGTTAGTT AGAAACATACAATGTGAGTTTGTTAGAGCATCTCCAATGGGGGTTCTTTAGTTTAGGTTCTTAAGCTAAGAACAAGTCGC TATATTTCCCCCCTATAGGAGAATGCTGAGCTGTAGTTCTTAGTTCTTAAAAATAAGGTTCAATTGCCTCTGCAAGTAAC TTTGCTTTTTGAGTTTGTAGATTAAAAAATTATATTTTATCTCTCATTCAGCAACGACTTATATAAATATATAAGGTATT GTGAGACCCAACCAAAAGTAAAATAAGAACCCGTGGTTGCCGTGAAATTTGCATCGGCTGCTTATATCTTATGTGACACT TTGGACCCACAGAAATAGAGCTGAGAACCCAAAATAAGAACTCATGGATGGAATGGAAATGCTCAGAGACAGTTACTTAC TAGCTGTGTGAAATGAATACTATAAATCGTCTAGCTTATGTATATCAAGCACAATTCAGAAAATCAATACACAATGTTTT CTCTATCAAATTGTTACTTTCTACTCTGTTTTTCTTGTGTTTGCTAAGAACATGCTGGTTTATGATGCTGCCAGTTACAT TGCCTTGCTTTGAGAAAAAATAAAATTATTTTTATTCTCAACCATAAAATTGTTATTTTATTTGAAGGCGATGTTTTCTA ATTGTAAAAGAATAGCAAATAGTCCAACAGCATTTTGTTCCTCGACGTGTATTATTCAGGAATTTATCCTTCATGTTTGG TCTGAGTCTCTGAGAGATTTTTTATTTTATTTTTGCTTTTAATTATGAAAATAGTACTGTAGTTTTATTTTGTTGTTGCG TAAAGGTTTAAAATTAGGAAATAAATGGGGTGAATTTTTCTGTCCTGATACCTTCTTCTTCACACTTTCGTTCTGCTGAT TGTTGTGGTGACCAGGGCTCAGTTGTAGAAATGATAAATTTGGATGCCTATCAAAAGAGATCGAGAGACGCTATTCAGAC ATTAAGTGATCATAAAGCAAGAATCACCTGTATGAGGTAAACATTGTTGAATTTTATTTTTTTTGTTGGTAAATTAATCA GCTGTATTTGATTCATAGAATGATCTGAACAGGCATAAGAAATTCTCCGTATCTCCACTTTCTGAATTTAATAAATGATG TTACACGAGAGCTGTAACCAAACTTGTTTACTTTTCATTTGTATAACTATTTCTGGAAATGCTAATAGAAAAAAGAATCT ATTACTAACTGGAAATCAAAGCATTGAAATTTAACAATACACATTAAACTTTCTGCTGATGCTTTTCTATTATATTATAA TCATATTTATTGTTTTGATTGAAAAGGGTCCTTCAAAGTTCTAGGTTGCTGAAGTACAGCGTATATGTAATATGATATTC CACGCTTTTTGCAACAAAGTAAATTGCTAACACGTAGTCATACTGTCATAGGTATGCATAAACTAAAAAATTAATGATTC TTTCAATACCCAAAAGGAATCATACTTTCTGGCTCAATAATTAGAAATTAGAAATTACTTTATTTTGTTAGCTTAGGGCG AAAGGTTAATAGTATGAAGCGTGGCTCGCGGGCTTCTTGTTGGCTGGTAGCCTGGTGCCACTACTAACACTCCAGGAATT ATTGTCTGTCTTGCGTTTTATGAGTTGTTATTGCATATCTTTTTTGCCTAAAAACTGATATTTCATGGAATCCTAAGTAA ACTGGCTTAATCTTAACTGAAATAATCAAACTACAGGTTGTTTTCCCACAATGAAATGTCTTCGTGTCGAGGTGAAACAC AAGGGGAGCAAAATGTTTTGGTCACTTCAAGCTGTGATCACTCCATTCGTCTGTGGAGGAAGGTAATGCTTAGTTTAAAC AACATTTGAGGGGCCAATGTGTATGTACACATTCTTAATTCTGTTTTACACCATTATGTTTGGGATGCATCTTAGTAGGA AAGGTAGAATGTAGAGGGGTGAGTGAAAATAGAGAGTGATGGAGAAACATCGTGATGTTCAATCTTAATGCTTGATAGAG AAGGTCGATAATGGAATGTATAAGTAACATGTTTACCCCTATTTCTTTACACTTTTGTAGGATTAAAAGTAAATAAAAGA AATATTTTAAGTTGTTTATGTTACCATTTGATTTTTCTATTGCTGGTGTTGTATGTAGAGTAAGTTCAGTATTCTACTAG AAAACAAAACCAAGAAGAACAAAAAGAATTTTTAAGATTGGCTTATTTGTTCACTTGTGCTTGCTCCTTGAAAGCACTAT TTACGTTTGGCAATTTTTCTCTCGGAGTGTACAGTCTGCACACCTCTGACAATATTGGAACAATATATTGTTTATGTAAT ACCTCTTTTTTATTCTGGTAAGAGTCCGAGACTTTGCGGAATTAGAAGAGGATGTATCACTGGATACAAGTCCAAGCAAA CCAACCATTTGGAAGGTTTACTCCACAAGGAATAAGGGAATCGCCATGTAAGACAGTTAATTGTAAGTTAGTGTGTAGTG TAGGGAAAAATCTACAATACTCTTCTAGTATGTACTCCTCCATTAGAACAATGACACGTGTTCCATGAATGGTTATTTTT ACCATTTTTTTCAATTTTTTAAAAATAAAAGTATTTGGTACCACTGGAGTATTGAAGATTCGCTTGTAATGTAGGGTAGT TATTTGTTAGTTATTTATTGTGTACTTGTTTTGGGCAGTTATTGTAGTAGGAGACTTAAAAAACTGTTGTGTAGAGCAGT TATTGGCAGAAAAGGAAGTTAGTTATCTCTATTTAAATATATGTAGTAATTTAGGGAAGTAAGGGGGATATGTGAGAAGT GTATTTGAATCCTTAGAGCATAGAAAATACTCTTTGTAGGAGCCTTGGCTCTGGATCTGGATCAAACCGTGTATGAGATA GAATTTCTTTCTCAATTCAGAATTAGTGCTCAAACATATTCTTAGTGTCTTCATCCGTCTTGTTGTAGGGTTCTTGCCTG CGATGCTTGAGAGGTCACAACGGTCCAGTGTTGTCACTGTCAAATAAATTATTGGGAGAGGGTAGCAGCAAAGTATTGGC TAGTGGAGGGGAAGATAGTACTGTTCGACTGTGGTCCCTTGGTTCAAGTGGCAAACGAGGACAGCATGCTCTAAAGGCTA CATTCTATGGGCATGAAAAAGGCGTAAATTTTTTGTCAGTTGCCGGGTATGAGTTGGCCTGTTAAAGTATTCACTGACAC TGCTAATCTGTTACTTTACTTTCCTTCCACCAATGCTATATGTGAATAATGTAGATGATATCTTGGTAAATTAATTGTGT TATTCTTTTTTTTTTGATTTTAACCTGGCAGGGTAAGTCTTGAGTGGGTAGGCTGTAGGCATGCTATGTGCCTATGCATT TCAAACTTATAACTTTTATTCTAATTCTTATAGGGAAGGGAGGGCCATCTTATAAAAATTCTTTTGTATTTACTCTATTG ATTTGTTGTATTTTGTCTCATGGATATACTGTAATTTAGGGATGCAGTATTATTGAATGCTAAGGTTTCTTATAAGTTAT AATTTTCACTTAACCTGCCTAGCAGATTAGCTGGTGTTAGAGATGCTACATAGTACAGATTAAACTTTCCTTTTTTTGCT AAAACCAGCTTTAGAATTTTCTTTTTTGACAAACATGAACATATTTGTCAACAGCCAGCACAAAACTTTGTCAATATTTG ACATGGATTAACAATTTGCATCCCACTTAAGAGGGAAAGACTTTACTGTTGTAAATAGCAATACATTTCTATGTCGTAGG ATCTTAAATTTGTTGAAGTCCAAGAGTTAACTAAAGAACTTGACAAACATGCTCTCATATTGATTTTTAGGTGGTATTTT ATTTTGACTGATTTGGGCTGGTCATGATTTTTTTGCCTAGAGATGTATTGACTTGGACTTGTTTTATACAGTTGATTTAA ATTCATGTTTTAAAATATATCTTGAATTCATGGGTTGAATACTATGATTCATAATTTCATATACTCACTTATCAGTATTA GGGAGAAAGTAGAAAGTAATTTGGTTTCCCAAATGTGGTTTTAGTGGTGTATGTATTCATATGATTTGTCAACTTATACT GCTTTGCTTAAGAGGGGGAAATTATACATTTTTGAGATGTCACTTGTTTAGTATGCTTAATGCATTACTACAATTATTCA TCAATGGGTGAAGTGAGTGGTATCCATATTAATCATTTTCGCCATGTGCCAATATATTGGTAAATCCTTGCTTTCCTCAA TTTTCAGGCACAAAACATCACTTTTGGTGAGCATGTCAAGAGATTCTAAGGTTCTTGTTTTCCTGTCTTTTATGTTGTCA TGTCCATTTACTTGTCTATCTACTTAATTTTGAATTTTCATTTACACTGTCAATTCTTCCTTTCCTGTCCTAACATGCTT TGATTGTTTCAATAGGACTATAGGTACTAATCAATAAGTTGTTTGTGTGTGTTGTAAAATCTAAAAGAGGAATAAAGTTA TCTGTGAAGTTCAGTTTATAAAAAATAGTTTTCCTAGCGGAAGCTAACAGAGATCTAGAGTGTTTTTTCCTTACTAAATG AATATTTATGTCTTTCTAGTATTCAATCATTATTTATATACTATTTGATTAATCTGACGTATAATTTGTAGCTTCAAATT GATTGCCATGGCAAGTTCATACATTTTAGATATTTCTTCCACTTCAATGCTCCAGTACTTTTTACTTTTTTAGATATTTC TTCCAGTTAAGCCCTATGCTTGAAACCTTATTATATTCTGCCATGACCATTTGAGAAAAAATATAAATTTTAGTTTAAAT TCTGTCCACATTCAGTGTGAATTTTTTACAGTTTACACTTGCAGCTAATGAATAAGTGTCCCATCATTATAGTAGCTAAG CTTAGGTTATGATTTGCTGATGCTGTAAAAAAAATTCACTGTCAATGAATTGAAATTAAATCCTAATAATTTTCTCAAAT TTTGAGCTCTTCTTTTACAATTAATTTGGTTCTTCTAATAGGTAAAGGTTTGGGATACAGCTTCATCATCCTCTGCTCGT TCATCCCCTTGTGTGGGAATGACTTCTTTTCGTGGTGCTCCTGTAAACATGAAATGCCATGAATCACTGTTGTATGTGGC AGCTGGTTCCTCTGTCACTGCTGTTGATTTAAGGACAATGCAGAAAGTCATCACCGTAGCTGTGGATCAATCAAAGCTGT ATTCATTTGACGCTTTCCCTTCAAAATCTTTAATATGCACTGGAGGTTATGGCAGGTATGACTGAGAGAAGAAACTTAGC TATTGTGGTGTCTAATCATCTAAATTAGTGAATTGCTCTTGTCCATTCGTTGTTTTTACTTTTTACTTAGAAAATGGCTA AATCTTAGTGAATTATCATGTAATATTGAGTTGATATATTTTATGGATGAGCACTGACCAAAAACTCAAATGCTTCAGAG CAATGCTCTGGGATATTAGGAGAAATCAAGAATCAGCAAAACCAGATCCGATAACAGAGTTGGATGGGCATGACGGGCCA GTAACTATGTTACACATGGATTCATACAAAATCGTTACTGGGAGCGCTGAAATGGTGCGTGTATGGGGAGTTGACACTGG TGTACAGACAATGTCCTTGCTTTCCTGTTTAACGCAAGATTATATGGGCAGATCTAATTTTGATGCCATGGCTATAGATG GCTGTAGAGCTATCACTGCTTGCTATTGTGAAGATCGGGGTCTTTTGCGCTTTTGGGACTTCAACGACGCTACAAAACCT TTCACGAAAATAGAAGATTGCCCTTCTTCAAGATTTTGGGATTCTCTGTCTGATGGTAGCAGCAGCGATGACGATGACGA TGACGATGATTCTGAAGATGAAGATGACGATGACAATGAGGATGATGATGATGAGTGGTGATCTTGGTGGCTCTCAAAGT TGTTTAGATCAACTTATTTTGTGTTTGCTTCCCAGAGCGTTGGTTTTCTTTGAAATGCTTATACCTTCAGTAGAAAGACC CACCTAAGCACGACTCAAGTAAATTCAAATAGTAAAATATGATTTGTTTATTTTTGCATGAATTATGAACTATGTACAAG GGGGATGTATGAAGTAAAAGGACTACTCTGATAAGAATGATAGGAAAAAACATTTAAAGTACAACCGTACATAGATGTTA AGATTTAAATGATTTTAATGACTAAAAGTCATTATTTTAAGGATTCATTCACACTTTATTTTATTTTTAATTTCATTTCT TCTACTCATCTTCTCTACTCTTTTTTATTTTCTGTTTCTATCACATTATCTTTCATACATCTTATTTTTCTCCACTCTCT TCGTGTGTATCATGTATATT
CDS sequence (LotjaGi2g1v0257200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGCCCGTCACCGCCACCGTCACAGTCGCCATCACCGGCGGCAACCACCATAACCGATCTGAACGACGACACCTT TGCTCACTGCGCCTCCTTCCTCAACCCCCGCGACGTGTGCAGTCTGGCGATGACCTCCACTGCCCTCAACCGCCTCGCCT ATTCCGATTCCATTTGGCAACGCTTCTTCACGGAGCGCTGGCAGCATGAAATACCTCGCGCCTCTCCTTCGCATTGGAGT GGAAATGGAGCCAGGGAACTGTACCTGGCTAGGCACACCGAGTTGCAACAGTTCAAGTTCTTTGACCCTTTCATTCTCGA CATTCACTTGCAACCAAAACCTTTCACACAGTTGCTCCTCCATGAAAACTATGCTTACTCCGTGCAGGGCTCAGTTGTAG AAATGATAAATTTGGATGCCTATCAAAAGAGATCGAGAGACGCTATTCAGACATTAAGTGATCATAAAGCAAGAATCACC TGTATGAGGTTGTTTTCCCACAATGAAATGTCTTCGTGTCGAGGTGAAACACAAGGGGAGCAAAATGTTTTGGTCACTTC AAGCTGTGATCACTCCATTCGTCTGTGGAGGAAGGGTTCTTGCCTGCGATGCTTGAGAGGTCACAACGGTCCAGTGTTGT CACTGTCAAATAAATTATTGGGAGAGGGTAGCAGCAAAGTATTGGCTAGTGGAGGGGAAGATAGTACTGTTCGACTGTGG TCCCTTGGTTCAAGTGGCAAACGAGGACAGCATGCTCTAAAGGCTACATTCTATGGGCATGAAAAAGGCGTAAATTTTTT GTCAGTTGCCGGGCACAAAACATCACTTTTGGTGAGCATGTCAAGAGATTCTAAGGTAAAGGTTTGGGATACAGCTTCAT CATCCTCTGCTCGTTCATCCCCTTGTGTGGGAATGACTTCTTTTCGTGGTGCTCCTGTAAACATGAAATGCCATGAATCA CTGTTGTATGTGGCAGCTGGTTCCTCTGTCACTGCTGTTGATTTAAGGACAATGCAGAAAGTCATCACCGTAGCTGTGGA TCAATCAAAGCTGTATTCATTTGACGCTTTCCCTTCAAAATCTTTAATATGCACTGGAGGTTATGGCAGAGCAATGCTCT GGGATATTAGGAGAAATCAAGAATCAGCAAAACCAGATCCGATAACAGAGTTGGATGGGCATGACGGGCCAGTAACTATG TTACACATGGATTCATACAAAATCGTTACTGGGAGCGCTGAAATGGTGCGTGTATGGGGAGTTGACACTGGTGTACAGAC AATGTCCTTGCTTTCCTGTTTAACGCAAGATTATATGGGCAGATCTAATTTTGATGCCATGGCTATAGATGGCTGTAGAG CTATCACTGCTTGCTATTGTGAAGATCGGGGTCTTTTGCGCTTTTGGGACTTCAACGACGCTACAAAACCTTTCACGAAA ATAGAAGATTGCCCTTCTTCAAGATTTTGGGATTCTCTGTCTGATGGTAGCAGCAGCGATGACGATGACGATGACGATGA TTCTGAAGATGAAGATGACGATGACAATGAGGATGATGATGATGAGTGGTGA
Protein sequence (LotjaGi2g1v0257200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGPSPPPSQSPSPAATTITDLNDDTFAHCASFLNPRDVCSLAMTSTALNRLAYSDSIWQRFFTERWQHEIPRASPSHWS GNGARELYLARHTELQQFKFFDPFILDIHLQPKPFTQLLLHENYAYSVQGSVVEMINLDAYQKRSRDAIQTLSDHKARIT CMRLFSHNEMSSCRGETQGEQNVLVTSSCDHSIRLWRKGSCLRCLRGHNGPVLSLSNKLLGEGSSKVLASGGEDSTVRLW SLGSSGKRGQHALKATFYGHEKGVNFLSVAGHKTSLLVSMSRDSKVKVWDTASSSSARSSPCVGMTSFRGAPVNMKCHES LLYVAAGSSVTAVDLRTMQKVITVAVDQSKLYSFDAFPSKSLICTGGYGRAMLWDIRRNQESAKPDPITELDGHDGPVTM LHMDSYKIVTGSAEMVRVWGVDTGVQTMSLLSCLTQDYMGRSNFDAMAIDGCRAITACYCEDRGLLRFWDFNDATKPFTK IEDCPSSRFWDSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDEW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 485 | 478 | 2.2E-184 | – | |
| PANTHER | 8 | 485 | 478 | 2.2E-184 | – | |
| SUPERFAMILY | 9 | 92 | 84 | 1.96E-13 | ||
| Gene3D | 9 | 99 | 91 | 3.1E-8 | – | |
| Pfam | 18 | 63 | 46 | 3.7E-4 | ||
| Gene3D | 124 | 248 | 125 | 3.1E-16 | ||
| SMART | 145 | 197 | 53 | 0.01 | ||
| SUPERFAMILY | 146 | 481 | 336 | 5.5E-37 | ||
| Pfam | 149 | 196 | 48 | 0.011 | ||
| PRINTS | 184 | 198 | 15 | 5.0E-6 | ||
| SMART | 198 | 241 | 44 | 1.2E-4 | ||
| Pfam | 199 | 241 | 43 | 7.2E-6 | ||
| ProSiteProfiles | 205 | 299 | 95 | 16.296 | ||
| ProSiteProfiles | 205 | 242 | 38 | 9.84 | ||
| PRINTS | 228 | 242 | 15 | 5.0E-6 | ||
| Gene3D | 249 | 490 | 242 | 3.6E-23 | ||
| SMART | 250 | 290 | 41 | 1.5E-4 | ||
| Pfam | 255 | 290 | 36 | 0.053 | ||
| ProSiteProfiles | 257 | 299 | 43 | 11.945 | ||
| ProSitePatterns | 277 | 291 | 15 | - | ||
| PRINTS | 277 | 291 | 15 | 5.0E-6 | ||
| SMART | 337 | 375 | 39 | 16.0 | ||
| SMART | 384 | 420 | 37 | 1.4 | ||
| MobiDBLite | 486 | 523 | 38 | - | – | |
| MobiDBLite | 496 | 523 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0257200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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