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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0259300 |
| Transcript ID | LotjaGi2g1v0259300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb-related protein; TAIR: AT3G28910.2 myb domain protein 30; Swiss-Prot: sp|P81392|MYB06_ANTMA Myb-related protein 306; TrEMBL-Plants: tr|I3SB61|I3SB61_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0259300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72686902..72688927) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAGTGGATCATAGAGTCACCAGTTTTATCTCACTTCACATTAATGGTCCCTATGGGGTTCAGAGACTTTAAAAAGT GGATCATAGAGGTTTCCCAGTGCAACCACATTGAATGCACCACGCGGTTTTGAAAGAAGGACATTTCATGAGAGAGCTGA CTTTGGCCGTCTTACTCTCCTTAATAGAGTTAAAGCATTTTGCTGTCAACTTTTGACTATTTGCCACCCTTCTCTTCTTT CTTTCCCTATTTATACACCCCTTGCTTTTGACTCTTGCCTCAACACCACACCTTATAGTAGCAAGTGAGGGAGAAAAAAA GCTTAAAGTTTCAAGTAGAAAAGAAAGAGATCATCAATCTCATAGCTAGAGAGGTACAAGTGTAGTGAAAGATGGGAAGG CCACCTTGTTGTGATAAAGAAGGTGTGAAGAAAGGACCATGGACCCCTGAAGAGGACATCACTTTGGTCTCTTATATACA AGAACATGGTCCTGGCAACTGGAAGGCTGTTCCTGCCAATACTGGTACTAATCTACTTTTGATCTTTGTGATTTTATGAT AGTGGATTTTCATTTTCTTTTAATTTGTCTTGTTTTATTAAATATAACATGTTTAGATTAACTTTTTTCCATCAAATCAA TCTTGTAACTCATAAGCTATTTCTGACTTCAAACTTAATTGTAGAAGGTTTCCAAACACGCGTTAACAGTATCATTTATG GAAACACGCAGGTTCTTTTAGTCTTCATGTGTGATCTAAAATGATCTCTCTTTTTTTTCAGGGTTGTCAAGGTGCAGTAA GAGCTGCAGACTTAGATGGACCAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACAGAACAAGAGGAGAAGATGA TAATCCATCTTCAAGCACTTTTAGGGAACAGGTAAATAAATTCATCCTCAACCTCTTTAAATTTTACTACAACAAACACC TAGTTTAGAAAAAAAATTATACTCGATTCTAAAGCCAGAAAGTTTCAAATCAATTATACAAAGAAGCTTCTGAGTTTCAG AGTCGGTTTTGAGGAAATAGAAGCTGATTAAAACATGTGTTGGATTTATTTTTTTTCTTTTGCACTCACATGCTAAACCA AAGTGCATTGATTATGGTGCAGATGGGCTGCAATAGCCGCATACCTACCACAGAGAACAGACAATGACATCAAAAACTAT TGGAACACTTATTTGAAGAAGAGACTCAATAAATTGCAAACAGGTGCTGCTGATGGAACCTTGGGACATGCAGGGTTTTC ACCAATTTCTAGGCCAATGCCAAGAGGTCAATGGGAAAGAAGACTCCAAACAGATATTCACATGGCCAAGAAAGCTCTCA GTGAAGCTCTCTCACCAAACAACAACACATTCACCTTGTTACCTGAATCAAACTCAACCCTTTCGAGTGAAAGCTCATTC TGTTCCACTAAACAAACTCAATCTTCACCATGCTATGCTTCAAGTGCTGACAACATAGCACGTTTGCTGAAGGGTTGGAT GAAAAAATCACCAAAGGGATCATGTTCCAAGACCCTGAATGACACTGATTCTACTAGTGAAGGATACTCAATTGTTGCAA AGGGAAGCAACAACTGTGTTGAATTGAATGAGACTTTTGAGTCCTTGTTTGGTTATAATGAGTCTTTGGATTCTTTAAAT TCTGAGTCCCCTGAAGCTACCCTTTTCCAAGATGAGAGCAAGCCTGCAGGGGTTGGTGCTGAAATGCCATTCTCTTTGCT TGAGCAATGGCTTCTGGATGATGCTGGTTATCAAGAGAAATTGAGCTTGCTGCAGTGAAATCACTGAAATTTCCACGATA TTTTAGGATATTGGATCTCAAATTGTAACATGAGGGAATCTGATTAAAAAAACTGCTTTTTCTTAGTTTTAGGATTAATT GAAGCCTGATCAAAAAACTCACTTTGGCCTTTTTCAACTTTTTGGTGCTAGAAGTGTATATTCCAATGCGAAATTGACAT TAGTGTTTCATCATCATGTTCTATAA
CDS sequence (LotjaGi2g1v0259300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCAATAGCCGCATACCTACCACAGAGAACAGACAATGA CATCAAAAACTATTGGAACACTTATTTGAAGAAGAGACTCAATAAATTGCAAACAGGTGCTGCTGATGGAACCTTGGGAC ATGCAGGGTTTTCACCAATTTCTAGGCCAATGCCAAGAGGTCAATGGGAAAGAAGACTCCAAACAGATATTCACATGGCC AAGAAAGCTCTCAGTGAAGCTCTCTCACCAAACAACAACACATTCACCTTGTTACCTGAATCAAACTCAACCCTTTCGAG TGAAAGCTCATTCTGTTCCACTAAACAAACTCAATCTTCACCATGCTATGCTTCAAGTGCTGACAACATAGCACGTTTGC TGAAGGGTTGGATGAAAAAATCACCAAAGGGATCATGTTCCAAGACCCTGAATGACACTGATTCTACTAGTGAAGGATAC TCAATTGTTGCAAAGGGAAGCAACAACTGTGTTGAATTGAATGAGACTTTTGAGTCCTTGTTTGGTTATAATGAGTCTTT GGATTCTTTAAATTCTGAGTCCCCTGAAGCTACCCTTTTCCAAGATGAGAGCAAGCCTGCAGGGGTTGGTGCTGAAATGC CATTCTCTTTGCTTGAGCAATGGCTTCTGGATGATGCTGGTTATCAAGAGAAATTGAGCTTGCTGCAGTGA
Protein sequence (LotjaGi2g1v0259300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKRLNKLQTGAADGTLGHAGFSPISRPMPRGQWERRLQTDIHMA KKALSEALSPNNNTFTLLPESNSTLSSESSFCSTKQTQSSPCYASSADNIARLLKGWMKKSPKGSCSKTLNDTDSTSEGY SIVAKGSNNCVELNETFESLFGYNESLDSLNSESPEATLFQDESKPAGVGAEMPFSLLEQWLLDDAGYQEKLSLLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 49 | 49 | 1.3E-15 | – | |
| PANTHER | 1 | 208 | 208 | 1.4E-69 | ||
| SMART | 1 | 38 | 38 | 0.0023 | ||
| CDD | 1 | 36 | 36 | 3.21037E-8 | ||
| ProSiteProfiles | 1 | 40 | 40 | 19.86 | ||
| Phobius | 1 | 1 | 1 | - | – | |
| PANTHER | 1 | 208 | 208 | 1.4E-69 | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| SUPERFAMILY | 2 | 42 | 41 | 7.49E-10 | ||
| Pfam | 3 | 36 | 34 | 6.9E-10 | ||
| Phobius | 10 | 17 | 8 | - | – | |
| Phobius | 18 | 236 | 219 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0259300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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