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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0261700 |
| Transcript ID | LotjaGi2g1v0261700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT5G15340.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340, mitochondrial; TrEMBL-Plants: tr|G7KKZ3|G7KKZ3_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi2g1v0261700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73019855..73022398) extracted from Lotus japonicus Gifu genome v1.2.
CGTGTGTACAAGAACTTACTAGATAAGTAAGAAAAAAAGAAGCCTAGTGTAGCATTTAGCATTGCAGTATAACCCATTTG TGCTGGTCATATGAAGTTAGTTTGTTGATCTATGTGACATTTGAACCCCCTCAAATAAAACTTTGAGAAGTTAAGAGGAA CAGGTAAATGAGATGGTCACAGTCACATATAACGCTACACCGTGCTTCCTCATCCCTCGCTCTCCAGTTACGCTCTCTTC TCAGAAGATGCGCACGCGCCACCGCTCTCCGCCCCGGCAAGCAACTCCACGCCGTCGCTACCGTTACCGGCCTCCTCTCC TCCCCCAACCTCTTCCTCCGCAACGCCATTCTTCATGTCTATGCTGCCTGCGCTCTCCCTTCCCACGCACGTAAACTGTT CGACGAAATTCCCCAATCGCACAAAGACTCCGTAGACTACACCGCCCTCATCCGTCGCTGTCCCCCTCTCGAATCCCTCC AACTGTTCATTGAAATGCGCCAACTGGGCCTCTCCATTGACGCGGCCGCCATGGTTTGCGCTCTCAACGCGTGTGCCAGG CTCGGAGACCCGAATGTTGGGCCTCAGGTGCATTCAGGTGTGGTGAAGTTCGGGTTTGGGAAGTGCACCAGAGTGTGCAA TGCGGTAATGGATTTGTATGTGAAGTTTGGGCTTCTGGGTGAGGCTAGAAAGGTGTTTGGAGAGATTGAGGTGCCTAGTG TTGTGTCTTGGACAGTGGTTTTGGACGGTGTGGTGAAGTGGGAAGGTGTGGAGAGTGGGAGGGTGGTGTTTGATGGAATG CCTGAGAGGAATGAGGTTGCTTGGACGGTTATGATTGTCGGTTATGTTGGGAACGGGTTTACAAAGGAAGCTTTTTGGCT CCTGAAAGAAATGGTATTTGGTTGTGGTTTTGAGTTGAATTGTGTTACCCTTTGTTCAGTTTTGTCAGCTTGTTCTCAGT CTGGTGATGTGTGTGTGGGTAGGTGGGTTCATGGTTTTGCTGTGAAAGCAATGGGGTGGGACTTGGGTGTTATGGTGGGG ACAAGTTTGGTTGACATGTATGCAAAATGTGGGAGGATAAGTATTGCGTTGGTGGTGTTTAAGAACATGTCAAGGAGGAA TGTGGTGGCGTGGAATGCTGTGCTTGGTGGGTTGGCCATGCATGGGATGGGGAAAGCTGTGGTGGATATGTTTCCTCACA TGGTGGAAGAAGTGAAACCGGATGCTGTGACTTTTATGGCTTTGTTAAGTGCCTGCAGCCATTCGGGTCTAGTTGAACAG GGTCGGCAGTACTTTCGTGATCTTGAGTCTGTTTACGAGATAAGGCCAGAAATAGAGCATTATGCTTGCATGGTAGATCT TCTTGGTCGAGCTGGACATTTGGAAGAAGCTGAGCTTTTGGTGAAGAAGATGCCAATTCGTCCAAATGAAGTTGTTCTGG GGTCCCTTTTGGGTTCCTGTTATGCACATGGTAAGTTGCAGCTGGCCGAAAAGATTGTGCGAGAGTTGGTTGAGATGGAT CCACTCAACACAGAGTATCATATCCTCCTTTCCAACATGTATGCATTGTCTGGGAAAGTAGAAAAGGCAAATTCCTTTAG GCGGGTTCTTAAGAAAAGAGGTATCAGAAAGGTGCCAGGAATGAGCTCCATATATGTTGATGGTCAACTTCATCAGTTCA GCGCAGGGGATAAGTCACACCCGCGAACTTCAGAGATTTACTTAAAGCTAGACGACATGATTTGCAGGTTGAGGTTGGCT GGCTATGTCCCCAATACAACTTGTCAAGTTTTGTTTGGTTGTTCCAGCAGTGGTGATTGTACTGAAGCATTGGAGGAGGT AGAACAGGTATTGTTCGCTCATAGTGAGAAGCTGGCACTGTGTTTTGGCCTAATTAGCACATCATCTGGTTCTCCACTAT ATATTTTCAAGAACCTACGGATATGCCAAGACTGTCATTCTGCTATTAAGATTGCCTCTAACATATACAAACGTGAAATT GTTGTCCGAGATCGTTATCGTTTCCACAGTTTCAAGCAGGGTTCTTGTTCTTGCTCTGACTATTGGTGAGTGAACCTTTT GGACGAGGAAGTTGAAGTTTCAATCATCAGGGACTCATTAGAGTAACTCGGTTTACATTATGAGGAGGTCCATCCTCAGA CCAAGTATTGTTGGGGAAAGTGAAAGCTAGGCTGACTACAAAGAGAATGAAATGAGTTGGTTTCAGTTTCAAGACCTATG TTGTGTTTACTTCCCTCACCTATTTTTTGGGAAGTTCTAAATCTAAACAAGAACGATATCTCACTTAATATGTATGACAT TGTAACTATTGAACAGCACTTGAACTTTATAATTACCTAGAAGAATAGACATGAAAGATATCACCAATTCTTTTCAGTTT GCATGATCAATCCAGGTTAATGAGTTGTCTTTCTGAAGTTATAGATGTTATATACTATAACTATGGTATAATTTTATCAT GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGTACAGGGTTCGATCCCCT
CDS sequence (LotjaGi2g1v0261700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATGGTCACAGTCACATATAACGCTACACCGTGCTTCCTCATCCCTCGCTCTCCAGTTACGCTCTCTTCTCAGAAG ATGCGCACGCGCCACCGCTCTCCGCCCCGGCAAGCAACTCCACGCCGTCGCTACCGTTACCGGCCTCCTCTCCTCCCCCA ACCTCTTCCTCCGCAACGCCATTCTTCATGTCTATGCTGCCTGCGCTCTCCCTTCCCACGCACGTAAACTGTTCGACGAA ATTCCCCAATCGCACAAAGACTCCGTAGACTACACCGCCCTCATCCGTCGCTGTCCCCCTCTCGAATCCCTCCAACTGTT CATTGAAATGCGCCAACTGGGCCTCTCCATTGACGCGGCCGCCATGGTTTGCGCTCTCAACGCGTGTGCCAGGCTCGGAG ACCCGAATGTTGGGCCTCAGGTGCATTCAGGTGTGGTGAAGTTCGGGTTTGGGAAGTGCACCAGAGTGTGCAATGCGGTA ATGGATTTGTATGTGAAGTTTGGGCTTCTGGGTGAGGCTAGAAAGGTGTTTGGAGAGATTGAGGTGCCTAGTGTTGTGTC TTGGACAGTGGTTTTGGACGGTGTGGTGAAGTGGGAAGGTGTGGAGAGTGGGAGGGTGGTGTTTGATGGAATGCCTGAGA GGAATGAGGTTGCTTGGACGGTTATGATTGTCGGTTATGTTGGGAACGGGTTTACAAAGGAAGCTTTTTGGCTCCTGAAA GAAATGGTATTTGGTTGTGGTTTTGAGTTGAATTGTGTTACCCTTTGTTCAGTTTTGTCAGCTTGTTCTCAGTCTGGTGA TGTGTGTGTGGGTAGGTGGGTTCATGGTTTTGCTGTGAAAGCAATGGGGTGGGACTTGGGTGTTATGGTGGGGACAAGTT TGGTTGACATGTATGCAAAATGTGGGAGGATAAGTATTGCGTTGGTGGTGTTTAAGAACATGTCAAGGAGGAATGTGGTG GCGTGGAATGCTGTGCTTGGTGGGTTGGCCATGCATGGGATGGGGAAAGCTGTGGTGGATATGTTTCCTCACATGGTGGA AGAAGTGAAACCGGATGCTGTGACTTTTATGGCTTTGTTAAGTGCCTGCAGCCATTCGGGTCTAGTTGAACAGGGTCGGC AGTACTTTCGTGATCTTGAGTCTGTTTACGAGATAAGGCCAGAAATAGAGCATTATGCTTGCATGGTAGATCTTCTTGGT CGAGCTGGACATTTGGAAGAAGCTGAGCTTTTGGTGAAGAAGATGCCAATTCGTCCAAATGAAGTTGTTCTGGGGTCCCT TTTGGGTTCCTGTTATGCACATGGTAAGTTGCAGCTGGCCGAAAAGATTGTGCGAGAGTTGGTTGAGATGGATCCACTCA ACACAGAGTATCATATCCTCCTTTCCAACATGTATGCATTGTCTGGGAAAGTAGAAAAGGCAAATTCCTTTAGGCGGGTT CTTAAGAAAAGAGGTATCAGAAAGGTGCCAGGAATGAGCTCCATATATGTTGATGGTCAACTTCATCAGTTCAGCGCAGG GGATAAGTCACACCCGCGAACTTCAGAGATTTACTTAAAGCTAGACGACATGATTTGCAGGTTGAGGTTGGCTGGCTATG TCCCCAATACAACTTGTCAAGTTTTGTTTGGTTGTTCCAGCAGTGGTGATTGTACTGAAGCATTGGAGGAGGTAGAACAG GTATTGTTCGCTCATAGTGAGAAGCTGGCACTGTGTTTTGGCCTAATTAGCACATCATCTGGTTCTCCACTATATATTTT CAAGAACCTACGGATATGCCAAGACTGTCATTCTGCTATTAAGATTGCCTCTAACATATACAAACGTGAAATTGTTGTCC GAGATCGTTATCGTTTCCACAGTTTCAAGCAGGGTTCTTGTTCTTGCTCTGACTATTGGTGA
Protein sequence (LotjaGi2g1v0261700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRWSQSHITLHRASSSLALQLRSLLRRCARATALRPGKQLHAVATVTGLLSSPNLFLRNAILHVYAACALPSHARKLFDE IPQSHKDSVDYTALIRRCPPLESLQLFIEMRQLGLSIDAAAMVCALNACARLGDPNVGPQVHSGVVKFGFGKCTRVCNAV MDLYVKFGLLGEARKVFGEIEVPSVVSWTVVLDGVVKWEGVESGRVVFDGMPERNEVAWTVMIVGYVGNGFTKEAFWLLK EMVFGCGFELNCVTLCSVLSACSQSGDVCVGRWVHGFAVKAMGWDLGVMVGTSLVDMYAKCGRISIALVVFKNMSRRNVV AWNAVLGGLAMHGMGKAVVDMFPHMVEEVKPDAVTFMALLSACSHSGLVEQGRQYFRDLESVYEIRPEIEHYACMVDLLG RAGHLEEAELLVKKMPIRPNEVVLGSLLGSCYAHGKLQLAEKIVRELVEMDPLNTEYHILLSNMYALSGKVEKANSFRRV LKKRGIRKVPGMSSIYVDGQLHQFSAGDKSHPRTSEIYLKLDDMICRLRLAGYVPNTTCQVLFGCSSSGDCTEALEEVEQ VLFAHSEKLALCFGLISTSSGSPLYIFKNLRICQDCHSAIKIASNIYKREIVVRDRYRFHSFKQGSCSCSDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 143 | 140 | 7.8E-11 | ||
| PANTHER | 21 | 134 | 114 | 1.3E-86 | – | |
| PANTHER | 74 | 271 | 198 | 1.3E-86 | – | |
| Gene3D | 144 | 270 | 127 | 7.5E-20 | ||
| Pfam | 156 | 180 | 25 | 0.013 | ||
| Pfam | 217 | 243 | 27 | 5.0E-5 | ||
| PANTHER | 270 | 482 | 213 | 1.3E-86 | – | |
| Gene3D | 277 | 382 | 106 | 3.0E-20 | ||
| Pfam | 292 | 319 | 28 | 0.012 | ||
| Pfam | 320 | 347 | 28 | 0.062 | ||
| Pfam | 354 | 380 | 27 | 0.23 | ||
| Gene3D | 383 | 511 | 129 | 8.4E-13 | ||
| SUPERFAMILY | 392 | 477 | 86 | 1.07E-5 | ||
| Pfam | 392 | 415 | 24 | 0.038 | ||
| Pfam | 490 | 623 | 134 | 2.4E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0261700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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