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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0265400 |
| Transcript ID | LotjaGi2g1v0265400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; TAIR: AT5G15530.1 biotin carboxyl carrier protein 2; Swiss-Prot: sp|Q9LLC1|BCCP2_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic; TrEMBL-Plants: tr|I3SWG0|I3SWG0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0265400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73477975..73480869) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTCGGTGCACGTGGAAGTCGTTAGGAACGTTAATGTTGAAGACGATAACTCCAACGTTGTTCTCTTGGATTGGAGGG AAACAAAAATCAAACAAACATTCATTCATGTCTCCGAGAACCATGATTTATTGTTGTTCCAAAGTTAGCTGTGTGACATT GATGGCCATTGCATCGTAATCATCGAACCTGTAATAATTTTCTAAAATCTAACTCACTCTCTTCCAATTCCTTTGTATTC TCCATCACATTTGCATTTTCCTCTTCCTCTTCGTTCTCATCGCCTTCAAGCTTAAATTCTCACCGACCCACATTGCCATT CCTAATTCCTTCAAATCACGCACCCCTTTGATCGGAGACTAGTTTTTGATTCGTGGGGTGGTTCCAGAATGGCCTCTTTC TCGGTTCCATGCTCAAAATCTCCTGCCCCTGCACCTTTGGGATTGAGATCATCCCACAAGGTTGAGTTTCAGAATGTGTT GTGCTTGAAGCCTTCCCAACAATCATTTGGATCTTTGTGTGCTCGGCCAGCTTCATCTGAGATTGGGGTATGTGATTATG TAGAAATTAGAATATGAATGAATTTGGTTTGACTAGATAAGACCCTGTTGATTTGTTTAGGATTTGGCCAATGATGTCAC TGTATGTGGTTGATTGTTTTATCAGCTTTTACATATTACAATTAATCAATGTGATGAAGACAGGATTAAGAAGCCAAGGG TAGCAAGCTATACCTATTTTTGGTTTTATGTGCTTCTCCATTTTTTTACTTGGAAGATTGGATAGTGAAAGAATGGAATT GTTATACATGTTTAATTGCTGGACCTGGATTTTAGAAATTTGGATGCCTTGCCCTTTTTATTATTTGGTACATTGGTTAT TGAGTTATTGGCTTCCCTTAATCTAATGATTCTATCAATTTCAGCATAAACTAGTATTGACCAAAATCCAATTGTACTTT GTGTGTCTAAGGTTCTATACTTTTGATAAAAACAAAATGAATTCTTGTTGTTCCTTGATTTCTCTTTGTTCATAGATGGT ATGTGACTAATTGAATAAATAATACATTATAAACGTCTGTCGAAACCTTTTCAGCTATATTTTATTTTTTCTAATTATTA ATTGTTCCATTGCTGTTTGTTGTTTTGCAGTGTCTTAACAGGAAGCAACTATCTGTCCAGAAGTTGCAAGCACAACGTAA TGAGGTCAGTTTGCATTGAGTCCTTTTTCTTTTCATGCATTGAGTCTTTTTCTTTTCATGGAAGTTTTATTCTCCTGTGC TGCTCTAATGTGTTCTTTATTAGATTGGGAATTTTTTACCATAAGTATCCCTGCTTTTGACATCATAGGCAGCTACTGTT GGAAATTCTAATTCTGCACCGTTACCTGTCAATGTTGCTTCTTCAAAAGAGAAAGAAGACTATAATGGGAGTGTCTCTTG TGGCACTGTCGCAGACGCATCTTCAATTTCTACATTCATGGCCCAGGTTTCAGACCTTGTAAAGTAAGATTAAGAAGCTC TGCAAGCAAACATCACATGTTTTTAAATTATCATGTTTATTGTTTGGACATGCATTGTGTTCAATACTTCAGTGTTTTTA TTTAATATTCTTTCCATGGCTAGACTTGTGGATTCTAGAGATATTGTAGAACTGCAACTTAAGCAATCAGACTGTGAGCT CATGATAAGAAAAAGAGAAGCTTTGCACCCTCCACCAGCCCCAGCAGTGGCTCCAGCATCACCATCATTTTACTATCCCC CACTTCCTTCGTCGCCATCCCCGCCACCAGTGGCTGCTTCTGCTCCTGTGAGCTCTCCACCTTCAAAAGCAGCACCTGCC TTACCTTCCCCTGGAAAAGAAAGCAAATCATCTCACCCTCCACTGAAATGTCCAATGGCAGGAACCTTTTATAGGAGTCC AGCACCTGGTGAACCTCCCTTTGTCAAGGTATGTAAACTGTAAAGTGTGACCTACATGGTTTAAAGGCATACTTCTTTTT CTGTTGAGGTGTCAATATGCCAAGGCTACTACTGTATATTTACTACAAGGAAGGAAATCTGTTCTGAATTTCAAAGATTT GTCACTGTGTTTACTAAATAATATAGTGAATTAGTGATTAACCTAAATTTATGTTGCTGTTGCTTCAGGTTGGAGATAAA GTGCAGAAAGGACAGGTTATTTGCATTATTGAGGCCATGAAACTGATGAATGAAATTGAGGTTTGTGTATTTTTTTTTCT GTTGGTTACTATATAGATTATCCTCCCATAACCAAGTGCAGAAACCTTAATTTCTTGGTTACCTTTCATTGCTTGGTGAC AGGCTGATCAATCAGGAACAATAACTGAGATAGTGGCTGAGGATGGAAAACCAGTCAGTGTAGACGCGGTACTCTCTCTC CCTCTCTCTCTTATCTGCGTCTGTCTATTTATAACTACATGCTTCATTTTTCTAACCAATTTACTTGTGCCGCATGCAGC CTCTTTTTGTAATAGCTCCATGAGTACCGGAAGGGACCTTAATTCGAAGTTGATGGGAATCTCTCTTGTTGAATAGCATC GTATTGAAAGATTTAGACCTTCCATTGTTCAGAAATTTCTTGTGTGGTACCGTTTGTCTCATGTTAAGAAATCCCAGGTT TCTTATGCCTTCCCTCCCTCCTAATTCAGTGTTGGACTGTGTAATTCTAAGAAGTGTTGTAATATAAATTATAAATTAAT GTTTCTGCTATTGGTTTTTGAAGGGTCCATGTTTCGTGTATGAACCTGCATGTTGGATGCTATGTTATTAGTTACAGTTT GCATCTTTCTAAGCCAAAAATGATGACTTGCAACAATCTTCCTTGCATAAAGCTCCTAAATTAGTAGGCCACTTTTGTCT ATTGTGAAAATGGTG
CDS sequence (LotjaGi2g1v0265400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCTTTCTCGGTTCCATGCTCAAAATCTCCTGCCCCTGCACCTTTGGGATTGAGATCATCCCACAAGGTTGAGTT TCAGAATGTGTTGTGCTTGAAGCCTTCCCAACAATCATTTGGATCTTTGTGTGCTCGGCCAGCTTCATCTGAGATTGGGT GTCTTAACAGGAAGCAACTATCTGTCCAGAAGTTGCAAGCACAACGTAATGAGGCAGCTACTGTTGGAAATTCTAATTCT GCACCGTTACCTGTCAATGTTGCTTCTTCAAAAGAGAAAGAAGACTATAATGGGAGTGTCTCTTGTGGCACTGTCGCAGA CGCATCTTCAATTTCTACATTCATGGCCCAGGTTTCAGACCTTGTAAAACTTGTGGATTCTAGAGATATTGTAGAACTGC AACTTAAGCAATCAGACTGTGAGCTCATGATAAGAAAAAGAGAAGCTTTGCACCCTCCACCAGCCCCAGCAGTGGCTCCA GCATCACCATCATTTTACTATCCCCCACTTCCTTCGTCGCCATCCCCGCCACCAGTGGCTGCTTCTGCTCCTGTGAGCTC TCCACCTTCAAAAGCAGCACCTGCCTTACCTTCCCCTGGAAAAGAAAGCAAATCATCTCACCCTCCACTGAAATGTCCAA TGGCAGGAACCTTTTATAGGAGTCCAGCACCTGGTGAACCTCCCTTTGTCAAGGTTGGAGATAAAGTGCAGAAAGGACAG GTTATTTGCATTATTGAGGCCATGAAACTGATGAATGAAATTGAGGCTGATCAATCAGGAACAATAACTGAGATAGTGGC TGAGGATGGAAAACCAGTCAGTGTAGACGCGCCTCTTTTTGTAATAGCTCCATGA
Protein sequence (LotjaGi2g1v0265400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASFSVPCSKSPAPAPLGLRSSHKVEFQNVLCLKPSQQSFGSLCARPASSEIGCLNRKQLSVQKLQAQRNEAATVGNSNS APLPVNVASSKEKEDYNGSVSCGTVADASSISTFMAQVSDLVKLVDSRDIVELQLKQSDCELMIRKREALHPPPAPAVAP ASPSFYYPPLPSSPSPPPVAASAPVSSPPSKAAPALPSPGKESKSSHPPLKCPMAGTFYRSPAPGEPPFVKVGDKVQKGQ VICIIEAMKLMNEIEADQSGTITEIVAEDGKPVSVDAPLFVIAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 284 | 284 | 1.7E-109 | – | |
| PANTHER | 1 | 284 | 284 | 1.7E-109 | – | |
| TIGRFAM | 116 | 283 | 168 | 3.4E-40 | ||
| MobiDBLite | 170 | 214 | 45 | - | – | |
| MobiDBLite | 170 | 195 | 26 | - | – | |
| ProSiteProfiles | 207 | 283 | 77 | 26.46 | ||
| Gene3D | 207 | 282 | 76 | 7.0E-30 | – | |
| SUPERFAMILY | 209 | 282 | 74 | 1.31E-23 | ||
| Pfam | 210 | 282 | 73 | 7.8E-25 | ||
| CDD | 210 | 282 | 73 | 4.58092E-27 | – | |
| PRINTS | 212 | 225 | 14 | 1.7E-20 | ||
| PRINTS | 229 | 243 | 15 | 1.7E-20 | ||
| ProSitePatterns | 239 | 256 | 18 | - | ||
| PRINTS | 244 | 257 | 14 | 1.7E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Acetyl-CoA carboxylase activity | Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA. | ||
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Cellular component | Acetyl-CoA carboxylase complex | A protein complex that catalyzes the first step in long-chain fatty acid biosynthesis. For example, in E. coli the complex is heterohexameric and composed of biotin carbonyl carrier protein, biotin carboxylase and the acetate CoA-transferase complex. |
Expression pattern of LotjaGi2g1v0265400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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