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LotjaGi2g1v0270700.1

Overview

Field Value
Gene ID LotjaGi2g1v0270700
Transcript ID LotjaGi2g1v0270700.1
Lotus japonicus genome version Gifu v1.2
Description tRNA (Adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A; TAIR: AT5G14600.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q80XC2|TRM61_MOUSE tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; TrEMBL-Plants: tr|V7AKG9|V7AKG9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0270700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:74159028..74162151) extracted from Lotus japonicus Gifu genome v1.2.

GATGCTAATCCCATTTTTAACCATTTTTATCCAGGGTAAGTCGTACACAACACATATCACCGAAGCCAACCGTAGCGCCG CCATTCTTCTTCACCCTCCTCCGCCGAACCGAACCGCAGCGCCGCCCTTCCACTCCTTTTTCCTGCTCTCTCCTCCGTCA CTATCTGCTTCGTTCTTCGTTGTGTCCTTCTTCTTCACCAGTCTCATAGCTTCAAATATTGCTAGCAATAGCTTGGTGTT TCTAAGGAAGGTTTGTGTTCTTTTCTAATTTTCTAGTTCCGGGTCTGTTCCTGTTTTCAACATGGGATATCAAAGCTAGT GCTATTGCTTGGTGTTATGTTGTTCACTTCAGCTTTCTGATATGTATTTGTTTTTACACACTCAGTAACTGATATGTAAA CATGTATGTTTTACTTGTTTCTATAGTTCTATTTACTTTACTTTTGCTTGATTAAGGATTTGTTGTAGTAGTCTCATTCA TCATTTTCTATTTGACTGTTTTTGGGTCTGGGAGTGTTCTGGTAAATTTTGAAAGGTTTGTGTTTTTGGGTGTCCTATGT TTCAATGTAGAGCATATTAGTATATTACAAAATATTTAACATTATAGTCATTGTCTTGGTTTCAATTTTTTTTTGTGTAT TCATTTTTTGTGTGTGTGTGAATTTAGATGGCTTTATTCCCAGAACACCCTGCATATGTGTAATGTGTTTCTCTATGTTT GTTGGGTGGCAGATATTTGTTCATTTTAAGTGGACTGAGAGTTTTGATTTTTGAAGACTTGTAAGATGTTGGCCGGCGAT CCTGCAAAAAGGATATCATTTAATCGATGTATTAGGAATGGTGATTTGGTTATTGTTTATGAAAGGCATGATAGCATGAA GGCTGTAACAGTTGCTGAAGGATCAGTGCTGCAGAATCGATTTGGCGTTTTCAAATATTCGGACTGGATAGGGAAGCCAT TTGGGTCAAAAGTATTCAGCAACAAGGGTGGTTTTGTGTACTTGTTAGCTCCTACGCCAGAACTATGGACTCTTGTTTTA AGCCACAGGACTCAGATTCTATATATTGCAGACATTAGCTTTGTTGTCATGTACTTGGAGATTGTTCCTGGTTGTTTGGT TCTTGAATCTGGAACTGGAAGTGGTTCTTTAACTACTTCACTTGCAAGGGCAGTAGCTCCTGCAGGACATGTGCATACAT TTGATTTCCACGAGCAAAGGGCTGCATCAGCTAGGTAACATCGAAGGGACTATTGAGATTGCCAGTTTAATATTGTATCT GTCACTATCATTTATCTGATATTTGATACATGTGTTTTTAGCTTTCAACAAAACCTTGTGTTTTATTTTCATTTTTTTGC ATATTGTTTTGTTTATTCTATTGATGAAATTGTAAGTGATAGAGACCTGAAAAGATTATGCTGGATTAAAGGGAATTTTA TTGAATTCAAAGCGGACCCAAAGAGCTATTACAATAGTTGGAGAAAAGGAAACCAGAGCATAACCTCCTCAGTCCTCACA GAAAATATCATTTGTCCAGCAAATATGCCTAACAAACTTTGATCATCGCAACTGCATCACCTTGTTCATGCTAACCTCCT AGAATACCGAATACCGCCCGCCTTGTGTGTGTGAATCCTTACCTCCTATGCACCCACCTCACCTTCTGTCTGGCCCGTTA AGGCTCTCCTCCTCTTGCCTAACTAATCCAGATAGACCACGCTCACGTTGGCTATCCCCTGTAACTTCCTTCTGGAGATA TACTTACCAGATCTTGTGCTAGGGTCTTCATCATTTAGGACATTTTCTAAAATTGGATCTCTATCAGTAAACCATAGGTT TGGTGAACTAATACTCCATTATTCAGAATGCCAACACTCAAGTACAAGTTTATTTGTTTGTACTCAGCTTTTGATCTGTT ACATCATTTAAGACACAACAAAACATGATTAACAAAACTTACGATAATTACAGTATCTGTGTGTTTGTTTGTCTGTGTGT GAAAGTGTGAGAATACACTTAAGTTGCTCAATATCAAGGTAAATTGTGCTTCTGTTATTTGTTTCGCAGGAGTTACAGAA TTGTTCCTGACATATTGTTAACTTCTTTTCTTCCATGTAGGGATGATTTTCAGAGGACTGGTCTAAGCAACTTAGTCAGG GTGGGAGTGAGGGACATTCAGGGTCAGGGATTTCCTGATGATTTTGCTGGCTTGGCTGATGCAGTTTTTTTAGATCTACC CCAGCCTTGGCTAGCTATTCCTTCAGCTGCCAAAATGTTAAAACAAGATGGCACGCTTTGCTCGTTCTCCCCATGTATTG AACAAGTACAACGATCATGTGAAACACTTAGAACCAGCTTCACTGGTACTATTCAATTTTCTACTTTCTGTCTTCATCTA TGTATTCCTTTTTAGATTTGAACTTGTTGAACCACCATGTTACTTATATTTTTTTGCTCTTTCTCTCATAATATTCACGT AATTAGTGCAGTTTATTAATCACTGATGAAATTCATGTGTAACTGTGTGTTTATGTAATAGATATAAGGACTTTTGAGGT GCTCCTACGCACATATGAAGTTGGAGAAGGGAAAATGGAAAGATTACAGGAGAATGGGAAAGGCTCTAATGGTTCACTTC CTTGTAAGAGGAGGCAGTGTTCAGATGGAGGCTATGTGCTCAGCAGTAATATTTCTTCTGTTGTAGCTAAACCTTGCGGT GAAGCTAGAGGTCACACAGGCTATTTGACATTTGCAAGGCTTAAATGTCTCTCATGAGTGTTATCATGTCCATTTGGATT TTTGTAGGAGAGAAAATACTGTATTTTTATGATCTATTCAATTTGAACATCATAAACAGTGTTCGGGAGCAGATATTTGA AGCTAGATTTCTGAGCAAATCCAATTCTCCAAACCAGTGTAGTCTTCAGCAGGAAAGAAATGGATTTCTTCTGAAGTGCT TTCTTGTTAGTATTTGCACAAATGTGCTTGATTGTGTTCTCTAATTAAGCCTCAAGGAATGATTTTTTATGTTTGAAATG GAATGAAAATGATCCTGAACTAGACTCGGAAGAGGTAGAATTAAGTATGCTATGAGAAGCTTAATAACAAAAGATGTTTC CTGC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0270700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGGCCGGCGATCCTGCAAAAAGGATATCATTTAATCGATGTATTAGGAATGGTGATTTGGTTATTGTTTATGAAAG GCATGATAGCATGAAGGCTGTAACAGTTGCTGAAGGATCAGTGCTGCAGAATCGATTTGGCGTTTTCAAATATTCGGACT GGATAGGGAAGCCATTTGGGTCAAAAGTATTCAGCAACAAGGGTGGTTTTGTGTACTTGTTAGCTCCTACGCCAGAACTA TGGACTCTTGTTTTAAGCCACAGGACTCAGATTCTATATATTGCAGACATTAGCTTTGTTGTCATGTACTTGGAGATTGT TCCTGGTTGTTTGGTTCTTGAATCTGGAACTGGAAGTGGTTCTTTAACTACTTCACTTGCAAGGGCAGTAGCTCCTGCAG GACATGTGCATACATTTGATTTCCACGAGCAAAGGGCTGCATCAGCTAGGGATGATTTTCAGAGGACTGGTCTAAGCAAC TTAGTCAGGGTGGGAGTGAGGGACATTCAGGGTCAGGGATTTCCTGATGATTTTGCTGGCTTGGCTGATGCAGTTTTTTT AGATCTACCCCAGCCTTGGCTAGCTATTCCTTCAGCTGCCAAAATGTTAAAACAAGATGGCACGCTTTGCTCGTTCTCCC CATGTATTGAACAAGTACAACGATCATGTGAAACACTTAGAACCAGCTTCACTGATATAAGGACTTTTGAGGTGCTCCTA CGCACATATGAAGTTGGAGAAGGGAAAATGGAAAGATTACAGGAGAATGGGAAAGGCTCTAATGGTTCACTTCCTTGTAA GAGGAGGCAGTGTTCAGATGGAGGCTATGTGCTCAGCAGTAATATTTCTTCTGTTGTAGCTAAACCTTGCGGTGAAGCTA GAGGTCACACAGGCTATTTGACATTTGCAAGGCTTAAATGTCTCTCATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0270700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLAGDPAKRISFNRCIRNGDLVIVYERHDSMKAVTVAEGSVLQNRFGVFKYSDWIGKPFGSKVFSNKGGFVYLLAPTPEL WTLVLSHRTQILYIADISFVVMYLEIVPGCLVLESGTGSGSLTTSLARAVAPAGHVHTFDFHEQRAASARDDFQRTGLSN LVRVGVRDIQGQGFPDDFAGLADAVFLDLPQPWLAIPSAAKMLKQDGTLCSFSPCIEQVQRSCETLRTSFTDIRTFEVLL RTYEVGEGKMERLQENGKGSNGSLPCKRRQCSDGGYVLSSNISSVVAKPCGEARGHTGYLTFARLKCLS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12133:SF2
6 305 300 3.7E-126 –
PANTHER
PTHR12133
6 305 300 3.7E-126
IPR014816
Gene3D
G3DSA:3.10.330.20
8 77 70 4.4E-28 –
PIRSF
PIRSF017269
10 308 299 1.9E-97
IPR014816
SUPERFAMILY
SSF53335
15 305 291 1.27E-75
IPR029063
ProSiteProfiles
PS51620
19 306 288 97.481
IPR014816
Pfam
PF08704
69 304 236 1.8E-95
IPR014816
Gene3D
G3DSA:3.40.50.150
78 307 230 1.0E-78 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016429
Molecular function TRNA (adenine-N1-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methyladenine.
Subterm of
GO:0030488
Biological process TRNA methylation The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule.
Subterm of
GO:0031515
Cellular component TRNA (m1A) methyltransferase complex A protein complex involved in the catalysis of the formation of the modified nucleotide 1-methyladenosine (m1A) in tRNA. In yeast, it is a heterotetramer of two subunits, Gcd10p and Gcd14p, while in bacteria and archaea it is a homotetramer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0270700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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