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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0273700 |
| Transcript ID | LotjaGi2g1v0273700.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12700.1 RNA processing FACTOR; Swiss-Prot: sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial; TrEMBL-Plants: tr|A0A0R0LE28|A0A0R0LE28_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0273700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74499127..74505116) extracted from Lotus japonicus Gifu genome v1.2.
GTACTACTTGGTACTTCAACCTTCATCGTCACACCACTAGAACTGATAAGTTTCATTCTGCTTCAAACATCTTTGCCCTC TTAATTCTCACGCCACCGCCAGCCACCGTCTCCTCCGCCATCGATTCAACATTCCCCGGCCAAATTCAAACACTCTCTCT GATCCACTGCCGCTTCCGGCGTCTCATCACCACACTCACAGCTTCATTGGTATGGTTTTCCTTTTCATGCTTTCTCATTA GCGATGTTGCGAAGAAGAACCACCTATGTTGATTTCTTCCCCCTCTTTCAACACCTTCTTCACCACCCATCATCATCGCT TTCCCCTCGCTATTCATCTTCCACGCCGAAGCGAAGAGAGTTATTGAGTTCCATGAGAGATCTCAAAACTGTCGATGCTG CTGTCGATTTCTTCAACAAAATGGCAGCAATCAATCCTTTCCCCAATATCAAAGAATTCACCGTTTTGATCAACCTCGTT GTGAAAATGAAACACTACACCACTGCCATTTCCTTAGTCAAACGCATGCATTCACTGGGTATCGAAGCTGATTCGTTTAC CTTCACCATTGTCATCAATTGTCTGTGTCGATTGAGCCGCACCGATTTAGGGTTTTGTGTTTTAGGGCTTATGTTCAAAA TGGGGTTGGAACCTGATATTGTGACTCTTACTACCATTGTTAACGGGCTTTGCGCGGAAGGGAATGTGGAACAAGCATTA GGGTTAGCTATGCGTATGGATGAGATGGGGTATCGATGTAATAGTTACACCCACGGAGCGATAATTAATGGGTTGTGTAA GGTTGGGAATACATCTGCTGCTATTGGGTATTTCAAGAAGGTGGAAGGAAGAGGTTTTAAATTCGATGTGCCGGTTTACA CTGCGATTATGGATAGTCTTTGCAAAGATGGGTTGGTGAATGAGGCTTTGGGTTTGTGGTCAGAAATGACTGGGAAAGGT ATTCAGCCTGATGTTGTCACCTACAATTGCTTAACTAGAGGACTTTTTCATTGTAGTAGAGGGAAAGATGCTGTAATTCT ACTGGATCAGATGTTGAAAAAGGGAATCATGCCTGATGTGCACACGTTCTCGGCTATAGTTGACAATTATTGCAAAGAAG GGATGATTGCAAGGGCTGAAAGGTTAATGGGTTTCATGGCTCGTGTTGGGGTGGAGCCTAATGTTTTCACCTATAATTCA TTGATTAATGCTCATTGCTTGCAAGATCAAATGCAGGATGCCATGAAAGTTTATGATAGCATGATTTACAAGGGTTGCTT GCCAAGCACTGTAACTTACAATACATTAATCCACGGGTGGTGTAAGATTAAGAAAATGGATAAGGCTATGTCTCTTTTGG GTGAGATGGTTAATAAAGGATTAACTCCGGACATTTGCACTTGGAATGCTCTTGTTGGTGGATTTTGCAAAGCTGGGATG CCTCTAGCTGCAAAAGAATTGATTTCTACAATGCAAAAGCATGGCCAACTTCCCGATCGCATAACTTATGCCATTATATT GGATGGACTATTTAAATGTCATTTTTATCCCGAGGCAGTATCATTGTATAGGGAATTGGAAAAGATGAATTTGGATCGCC ATATTACAATTTATAGTATTATGCTTGACGGGTTGTGCAGTTATGGAAGACTGAAAGATGCACGGGAATTCTTTTCTGGT CTGCAAGCTAAAGGGTTGAAAATTGATGTTTTTACTTATACCATAATGGTTCAAGGTCTATGTAGAGAAGGATTATTGGA TGATGCAGAACAGTTACTGATGGATATGGAAGAGAAGGGCTGTCCCCCTAATGATTGTACTTATAATCTTTTTGTACAAG GATTGCTGCGAAGAGGTGATATTTCACGGTCGGAAAAATACCTTCAACTAATGAAAGGCAAAGGATTTTCTGCGGATGCT ACCACCACAGAATTGCTTATCAACTTCTTCTCTGGTAATAAAGCAGATAATACATTTTAAGAGTTCTTGCAGAAATTTGA TGGAGTATAATCTCAATGTATTCAAAATCTCAATTTTTTTGAGGACCAAGCTGTTGGTAGAGTCGGACTCTAAATACACC AGGTTTTGGTATTTATCTTCTACCATTTCTTTGCTTTGCTTGATTTTAATCATCCAATAAACAATGTTTGGATTTTAGGA TGTGTAATTTTAGTTAGATACATTATAGACAAATTATCCCAAAAATTCTCACCTATTTGATTTTCTAATTCTTAGTACTT CTCAGTTCCTCTTTGTTTTAGGTTTCATCAACAGAAAATTCATGTCCAAGGTTTAGCTATATATTTTCAGCTGCCAATTT AGGTCCTTTTTTAATTAATTGTTTCTTCAAGGTAGAGAACAGAGAAAAGCATGGGAACAAGTGAACAACATCATTTGAAA AGGTATCAGACTGAGTAGTAGTGGAGAATATTTAATTTAGAGATATGGTAGGAAGGATGGGTGGTGAAGCTCATTGTGGC TCTTTCTAGTTAGAGGAAATTATTGGGATGGTTCAGATCCCATCTGAAAGAAAAGGAAATACAGAACAAAGAAAAGGAGT ATCATGGTACATATACTCTTCTTTTACATCATTAGTTCAGGTGACATTCAGTTGTGATTGCTCGTAATTGAACAATTTGG ACCATATACAATTGATAACAGTGAAAAAACAATCTAATCCATTTGTTTTGAAGTTAATTTATCTATGAATTTGATTTGCC AGTTGAGAGTTGTTTACGGCAGAGGGCAGACATAGCAAAATTAGACAAAGAGTTATTTATTCTAATTAGCAACAGCACAG TTCTTTCGGGGGCTATCTTCCAGGTATTAAGTGGAGCCCTGGAATGGATGGGGAAATTCTCCTGCAAGCTTCTGGTTTCA TTAGAAACATCAGCATTCTCATGCTTTAGGAGGATAACATCAGCTAAGGTATAACTGATTTATCTTTATAGTTGTTACTT TTTAGCTTTAATTAATAGAAATTATGTACTCTGCCAATGAGGGTTAGTTCTGCTAGTAGGTCTAAATTGTGCTGACTCAC AGGTCTTTGGTTTGGTTTGCATCTTAAAGTAGCTTTTTAAGTGGTCTGTGCGGTCCTCTGAACTTGTTATGGTGTAAACT GTAATCTTTCGCCCCTAAATTTTAATGTTCTAAAAAACTTTGTTAAGTTGTCTTTGTTTAACCATCGTAATCAATTTCTA GAATTGAAAATTGAGGTATATAATTGCACTTTTCTTTCTTTTTTTTTTGGTCAAAAGATTGCACTTTTGTTAGAAGTGTA TTTAACATTTTCTTTTGATTTTGGCGCTATTTTTGCAATTGAAGGAATGAAGAATTGAAAGAGTTTAAAACAATTATTCT TTTGTTTCGTCTCTGCGAAAGAAGCTGTAGTGCCAAATAGATATTAATTTCTACATATAAATAACATTTTTTAAATTAAA GAGTCAATTGTATACAATCAATATATTATCATTATTATTATTATTATTCTTATTATTATTAGAACAAAATATTAAAGTTA CATAATTATTATTTAAGACTATTGATGGGTTTGCAATTCTGAACTGATGACTAATACAAAACTTCAAATTTTATTCATAC TTCATGAATGGTATTAAAACATGTACCATGAATTGGTTAGAGTTTAGGTCTTATGGTTAAGCTGGCTAATTCAAAATTTC AAATTTTATTCGTAATTCATGAATGGTATTAAAACATGTACCATGAATTGGTCAGAGTTTAAGGTTTAGGTCTTATGGTT AATTTTCATAAGAGTAAGCTGGCTGGTATATCTGTTGTAAGAGGAGAAATGCAGAAGTTTGTATCCTTACTCAATTGTAA AATCACAAACATCCCTTTTGTTTATTTAGGGATGCCTGTGCTAATCCAAGAAAAGCGGCAACATGGGATCCACTGATTAG TAGAATGAAGAAGAGATTAGCTTCTTGGAAACAAAAATCATTGTCATTTTGGTGGAGAATCTGCCTAATGAAGAGTGTGT TGCCTAATTAAAATGATTCAGAAAGATTTTCTTTGGGGAGGGAGGGAAAAAATAGCATGGGTAAAATAGGAGGTGTGTAG ATCCTAGCAAGAGGGGGGGGGGGGGAATCAAAGTTTTGGGGAAGTGGAGGTGTAGGCTTTTGAGGGAGCAAGGAAGCTTG TGGAGTAGGGTTCTAAAAGCTCAAGTATGGGGTGTTTAAGGAGAATGGCAATGAAATGGAGTTCGACAAGGATTCTGTTT GGTGACGGGACTTAGGGAAGGGTTGTGGGGGTATGAGAGGATGGTTTGAGGAGAATATGAGCAGAAAACTGGGTAATGGA AGTCAGGTTCTGTTCTGGCAGGATAAGTGGGTGGGAGAAGAAGGAAGTTTAAAAACAAGAACGATATCATAGGCTGTTTG TTGTTTCTGTACAGCAGCAGTGTTCTGTGGAAGAAATGGGGAAGTGGGTAGAAGGAGGGTGGGAATGAAAGTTTAAGTGG ACGAGAGAAGTTTTGGCATAGGAAAATCAAATGTTGAAAAAACTGATGCAGGATATTGGCTTCCAGCTAGACAAAATAAT GGCTTATAATGGCTTATTTAGAAGCTTGTGGAAGGTTTCGGGGCCATCTAATGTATTAGCATTTGTTTGGCGGGTCTTTC TGGATAGGACCAAACTAGAGAGAATTTAAGGAAAAATATTATTGTTCAAACAGAACCAGGTTGTATTTCCTGTCTATCTC AAGAAGGGGAGGAGACTTCAAGTCATCTTTTACTTTCCTGCAAGGTTGATATGGCTGTTTGGTTGGAATGCTATGACTGG GTGAGATTGGCTACTGTACTGCCCATACAATGCAAGGCTCATTTCCAACAACATGGCCATGGGTTATTCAAAGGTAATAA ACAATTGGTTTGGTTGGCTGTTTGGGCTGCTACTATTTGATCCCTGTGGTTGCATAGGAATAATATATTATTTCATGATG AGGATACTAATGTTGATACGGTAGTTGATTTAATTAAATTTAGATCTTGGAATTGCCTGAAATCTAAGGTTAACTTCAAG TCTTCATTTTATGATTGGTCTGTGAGTCCTAGTATTTCTTTGGAAGCTATTAGCTGAAATTGTACTTGGCAGGTGATGTA AACTGATCTATGTATATGGGTTGAGGTATTCCTCATACCTAAAGTAATATATTGTTTTGCTGTCCAAAAAAAATGTACCA TGATTGGTGCAACCTTTACATTGACAATATGATTTTGTTTTGTCGATTCATTTGTGGAGGGTGGTTGTCTATTTATAGGT AGCATATTGAAGAGTATTGGTGACAAAGTTGTTTTCATTACTGAAAAGTCGTTGTTCTATTTTTATTTTATTTTTTTGCA GAAACAAATCCACAAGACAAATACAATCTTTATTTCAATTGCGAAGAAATAGGTTGAAGCTCAATGATGCCTGCGTTCAA ATTATTAGGAGCTTCATTCAGGGAATCAGGGGTGCGGAAGTTTTCTATGATTTTTTTTCTGTCAAGAAACCTTCTCTCGT CAAGTAAATATGCCACTCTATTCTACTCCCAAGCTAGAGGAGGACGGGAAAAAGGAGCTCATTAGTCCTGTATAAAAGGA AGAGGTCAAGAATGCTTTGATGTCAATTGAATCTTTCAAAGGAAGAGCTCTAGCGTTGGATGTTTTCAACCATTTTTCTT CAAGAAGTACTTGGATATTGTTGGAGATGGTATTGGTAATTGGAGGATGATCGCAAAGGTGTTCAGCATTGGTAATCTTG AAGCAAGCTTAGCGAAAACCATAGTGGTTATGATTCCTAAAGTGGATCACCTTTTCCACTTGAAGGAGTTTAGACCAATA AGTTTATACAATGTGACTAATAAGCTCGTAAGGAATTGAACAAATAAAAAGGCTCGTAATGGAAGTTTTCAATTCATGAT AATGTGTGGAAGGCCATTCACATTTTTCAATTCATATTTAGATTTAATGAAAATTTAAACATTTAATCCA
CDS sequence (LotjaGi2g1v0273700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCGAAGAAGAACCACCTATGTTGATTTCTTCCCCCTCTTTCAACACCTTCTTCACCACCCATCATCATCGCTTTC CCCTCGCTATTCATCTTCCACGCCGAAGCGAAGAGAGTTATTGAGTTCCATGAGAGATCTCAAAACTGTCGATGCTGCTG TCGATTTCTTCAACAAAATGGCAGCAATCAATCCTTTCCCCAATATCAAAGAATTCACCGTTTTGATCAACCTCGTTGTG AAAATGAAACACTACACCACTGCCATTTCCTTAGTCAAACGCATGCATTCACTGGGTATCGAAGCTGATTCGTTTACCTT CACCATTGTCATCAATTGTCTGTGTCGATTGAGCCGCACCGATTTAGGGTTTTGTGTTTTAGGGCTTATGTTCAAAATGG GGTTGGAACCTGATATTGTGACTCTTACTACCATTGTTAACGGGCTTTGCGCGGAAGGGAATGTGGAACAAGCATTAGGG TTAGCTATGCGTATGGATGAGATGGGGTATCGATGTAATAGTTACACCCACGGAGCGATAATTAATGGGTTGTGTAAGGT TGGGAATACATCTGCTGCTATTGGGTATTTCAAGAAGGTGGAAGGAAGAGGTTTTAAATTCGATGTGCCGGTTTACACTG CGATTATGGATAGTCTTTGCAAAGATGGGTTGGTGAATGAGGCTTTGGGTTTGTGGTCAGAAATGACTGGGAAAGGTATT CAGCCTGATGTTGTCACCTACAATTGCTTAACTAGAGGACTTTTTCATTGTAGTAGAGGGAAAGATGCTGTAATTCTACT GGATCAGATGTTGAAAAAGGGAATCATGCCTGATGTGCACACGTTCTCGGCTATAGTTGACAATTATTGCAAAGAAGGGA TGATTGCAAGGGCTGAAAGGTTAATGGGTTTCATGGCTCGTGTTGGGGTGGAGCCTAATGTTTTCACCTATAATTCATTG ATTAATGCTCATTGCTTGCAAGATCAAATGCAGGATGCCATGAAAGTTTATGATAGCATGATTTACAAGGGTTGCTTGCC AAGCACTGTAACTTACAATACATTAATCCACGGGTGGTGTAAGATTAAGAAAATGGATAAGGCTATGTCTCTTTTGGGTG AGATGGTTAATAAAGGATTAACTCCGGACATTTGCACTTGGAATGCTCTTGTTGGTGGATTTTGCAAAGCTGGGATGCCT CTAGCTGCAAAAGAATTGATTTCTACAATGCAAAAGCATGGCCAACTTCCCGATCGCATAACTTATGCCATTATATTGGA TGGACTATTTAAATGTCATTTTTATCCCGAGGCAGTATCATTGTATAGGGAATTGGAAAAGATGAATTTGGATCGCCATA TTACAATTTATAGTATTATGCTTGACGGGTTGTGCAGTTATGGAAGACTGAAAGATGCACGGGAATTCTTTTCTGGTCTG CAAGCTAAAGGGTTGAAAATTGATGTTTTTACTTATACCATAATGGTTCAAGGTCTATGTAGAGAAGGATTATTGGATGA TGCAGAACAGTTACTGATGGATATGGAAGAGAAGGGCTGTCCCCCTAATGATTGTACTTATAATCTTTTTGTACAAGGAT TGCTGCGAAGAGGTGATATTTCACGGTCGGAAAAATACCTTCAACTAATGAAAGGCAAAGGATTTTCTGCGGATGCTACC ACCACAGAATTGCTTATCAACTTCTTCTCTGGTAATAAAGCAGATAATACATTTTAA
Protein sequence (LotjaGi2g1v0273700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRRRTTYVDFFPLFQHLLHHPSSSLSPRYSSSTPKRRELLSSMRDLKTVDAAVDFFNKMAAINPFPNIKEFTVLINLVV KMKHYTTAISLVKRMHSLGIEADSFTFTIVINCLCRLSRTDLGFCVLGLMFKMGLEPDIVTLTTIVNGLCAEGNVEQALG LAMRMDEMGYRCNSYTHGAIINGLCKVGNTSAAIGYFKKVEGRGFKFDVPVYTAIMDSLCKDGLVNEALGLWSEMTGKGI QPDVVTYNCLTRGLFHCSRGKDAVILLDQMLKKGIMPDVHTFSAIVDNYCKEGMIARAERLMGFMARVGVEPNVFTYNSL INAHCLQDQMQDAMKVYDSMIYKGCLPSTVTYNTLIHGWCKIKKMDKAMSLLGEMVNKGLTPDICTWNALVGGFCKAGMP LAAKELISTMQKHGQLPDRITYAIILDGLFKCHFYPEAVSLYRELEKMNLDRHITIYSIMLDGLCSYGRLKDAREFFSGL QAKGLKIDVFTYTIMVQGLCREGLLDDAEQLLMDMEEKGCPPNDCTYNLFVQGLLRRGDISRSEKYLQLMKGKGFSADAT TTELLINFFSGNKADNTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 35 | 203 | 169 | 6.2E-32 | ||
| PANTHER | 38 | 271 | 234 | 6.6E-132 | – | |
| Pfam | 67 | 116 | 50 | 1.5E-8 | ||
| ProSiteProfiles | 68 | 102 | 35 | 7.695 | ||
| ProSiteProfiles | 103 | 137 | 35 | 10.249 | ||
| TIGRFAM | 105 | 139 | 35 | 1.1E-6 | ||
| Pfam | 137 | 186 | 50 | 7.6E-12 | ||
| ProSiteProfiles | 138 | 172 | 35 | 9.843 | ||
| TIGRFAM | 140 | 173 | 34 | 4.8E-4 | ||
| ProSiteProfiles | 173 | 207 | 35 | 9.405 | ||
| TIGRFAM | 175 | 208 | 34 | 7.0E-5 | ||
| Pfam | 208 | 254 | 47 | 3.0E-13 | ||
| ProSiteProfiles | 208 | 242 | 35 | 12.2 | ||
| TIGRFAM | 211 | 244 | 34 | 3.6E-8 | ||
| PANTHER | 212 | 412 | 201 | 6.6E-132 | – | |
| Gene3D | 219 | 328 | 110 | 3.8E-32 | ||
| ProSiteProfiles | 243 | 277 | 35 | 11.049 | ||
| TIGRFAM | 245 | 279 | 35 | 4.2E-4 | ||
| Pfam | 273 | 305 | 33 | 7.2E-8 | ||
| ProSiteProfiles | 278 | 312 | 35 | 11.345 | ||
| TIGRFAM | 280 | 314 | 35 | 5.6E-5 | ||
| Pfam | 312 | 361 | 50 | 1.2E-16 | ||
| ProSiteProfiles | 313 | 347 | 35 | 12.321 | ||
| TIGRFAM | 315 | 348 | 34 | 9.1E-8 | ||
| Gene3D | 329 | 433 | 105 | 3.4E-32 | ||
| ProSiteProfiles | 348 | 382 | 35 | 13.351 | ||
| TIGRFAM | 350 | 384 | 35 | 5.8E-10 | ||
| PANTHER | 378 | 567 | 190 | 6.6E-132 | – | |
| Pfam | 382 | 431 | 50 | 2.0E-12 | ||
| ProSiteProfiles | 383 | 417 | 35 | 11.542 | ||
| TIGRFAM | 385 | 418 | 34 | 4.5E-6 | ||
| ProSiteProfiles | 418 | 452 | 35 | 8.813 | ||
| Gene3D | 434 | 578 | 145 | 7.0E-32 | ||
| ProSiteProfiles | 453 | 487 | 35 | 9.81 | ||
| TIGRFAM | 456 | 489 | 34 | 7.6E-6 | ||
| Pfam | 483 | 516 | 34 | 2.4E-12 | ||
| ProSiteProfiles | 488 | 522 | 35 | 14.25 | ||
| TIGRFAM | 490 | 523 | 34 | 4.1E-10 | ||
| ProSiteProfiles | 523 | 557 | 35 | 9.317 | ||
| TIGRFAM | 525 | 558 | 34 | 1.6E-4 | ||
| Pfam | 526 | 555 | 30 | 0.013 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0273700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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