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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0273700 |
| Transcript ID | LotjaGi2g1v0273700.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12700.2 RNA processing FACTOR; Swiss-Prot: sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial; TrEMBL-Plants: tr|K7K229|K7K229_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0273700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74507889..74512419) extracted from Lotus japonicus Gifu genome v1.2.
GAGAAACTGAAATTCTTATTGTTGCCATTGTACTGCTTCATCCTTCCTGCACACACACGGAGCCCAATTCAAACGATCCT GCCGCCGCCGCCAGACACCACCAACCACCGTATCCGCCGCCATCGATCAAGCATCCCATGCCAAATCCAGCCACCTCGCC GCCCGCTTGAGGCGTAACCTCGTCGCACTCGCAGTATCACTTGTATGATTCTCCTCTCCACGATTCATCATTATTAACTA ATTCAATCTATCGATATCCTATCAATTTCATCTCGCGTGTGGTTTTCAGATCCAGCTTCTTCGACAATCGAAGTTAGGGT TCAATGTTTTGAAACTCCTAGTGATGTTGTTGCGAAGAAGAAGGTTCCCAATCCTTCAACATTTGGGCGTTTTCTCAAAC CCTAGGAGCTTTCTTCTTCACCCATTACATTCCCCTCAATATTCATCTTCCAAGCGGAACAGGGAGCAGTTATTGAATTC CATGAGAGATCTCAAAACTGTCGATGCTGCTTTGGATTTCTTCAACAAAATGGTTGCAATGAACCCTTTCCCATCTGTCA AAGACTTCAATTGTTTGTGCAGCATTGTTGTGAAGATGAAGCATTACACCACCGCCATTTCGCTAATCAAACGAATGCAT TCGTTGGGGGTGAAAATTGATTCATGGACCCTCAATATTGTCGTCAATTGTCTCTGCCGATTGAAGCGAACGGTATTCGG GTTATCGATTTTAGGGCTTATGTTTAAAATTGGTTTGGAGCCGACGGTAGTGACGATTAACACCATTGTTAACGGGCTTT GTGTGGAGGGCAATGTGGAACAAGCATTGGGGTTAGCTGAGCGTATCGAAAATATGGGCTATGAATCGGATAGTTACACC CATGGAGCAATAATTAATGGATTGTGTAAGGTAGGTGATACTTCTGTCGCTATTGGGTATCTAAGGAAGGTGGAAAAAAG AGGTTGCAAATTGAATGTCGTAGCTTATAGTGCAATTATGGATGGTCTTTGCAAGGATGGGTTGGTACCTGAGGCTTTGG GTTTGTGGTCAGAAATGACTGGTAAAGGTATTCAACCTACTCTTGTCACCTACAATTGCTTAATTAAAGGACTTTGTGAT TTTGGTAGATGGCAAGATGCTGCAATTCTACTTGGTATGATGATGAAAAAGGGAATCATGCCTGATGTGCAAACTTTCTC GGCTATCGTTGACAATTTTTGCAAAGAGGGGATGATTACAAGGGCTGAAAGTGTAATAGGTTTCATGGTTCGTATGGGAG TGGAGCCTAATGATTTCACCTATAACGCAATGATTAATGCTCATTGTTTGCAAAATCAAATGAAGGAGGCCATGGATGTT CTTGATATGATGGTTCGCAAGGGTTGCTTGCCATGCACTGTAACTTATACGTCATTAATCCATGGGTGGTGTAAAATTAA AAACATGAATAAGGCTATGTCTCTCTTGTGTGAGATGATTAATAAAGGATTAAGTCCAAACATCTGCACATGGAATGCTC TTATTGGTGGGTTATGCAAAGTATGGAAACCTCTAGCTGCAAAAGAATTGATTTTTACAATGCAAAAGCATGGCCAACTT CCCAATCTCCGTACTTATGCTATTATTTTGGATGGCCTATTCAAATGCAATTTTTATTCAGAGGCAATATCATTATTTAG GGCATTGGAACAGATGAATTTGGATCGTCATATTTTAATTTATAGTATTGTACTTGATGGGATGTGCAGTTTTGGAAAAC TGAATGATGCGCGGGAACTCTTTTCTTGTCTACCAGCTAAAGGTTTGAAAATTAATGTTTATACATATACAATAATGATT AAAGGCCTATGTAAAGAAGGATTATTGGATGATGCTGAAGACTTACTGATGAATATGGAAGAGAATGGCTGTCCCCCTAA TGCTTGTACTTATAATGTTTTGGTTCAAGGATTACTGCGAATATATGATATTTTAAGGTCAGCAAAATACCTTCAACTAA TGAAAGGCAAAGGTTTTTCTGCAGATGCTACCACTACAGAATTGCTTATCAGCTCCTTCTCTGGTATTAAAGGAGAAAAT GCATTTCAAGAGTTTTTGCAGAAATTAGTTGGGGTATAATCTCAGTGTATTCAAAATCTCAATTTTCTTGAAGGCGAAGC TGTAAGAAACTGTAAGTAGAGTCAAACTAAATACACCAGATTTTTATATAAGTTCTCCTGCCATTCCTTTGCTTGACTTT AATATTACAATAATAATGTTTGCATGTTAGGATTAGTATTTCAGTTAGATATTTTTGGTCAAAATGTATATCTATCCCCA TAGATTCTCACCTGTTATATTTTCTAATTCTTAGCACTTCTTAGTTCCTCTTTGTTTTAGGTTTCATCAAAAGAAAATGC ATGTCCAAGATTTAACTTCTATTATTTCCGGCTGCCAATTCAGGTCCTATTTTAATTTTTTTTTCTTAAAGGTAGAGAAC AGAGAAAAACATGGAACATAGTAATTTGAAAAGGAAGTAGACTGAGTATCAATGGAGAAGATTGAATTTAGGGATATATG ATAGAATGGACGGATGATGAAGCTTGTGTTAGCTCTTTCTGGATGGAGAAAAATATTGGGAAGGCTCAGACCCACATATG AAAGAAAAGGAAATACAGAACAAATAAAAGGGAGGGTCATGGATCTTGTGCTCTTCTTTTACACCATTATACAGGTAACA TTCAGGTGTGATTATTTGTATTGAATAATTTTGACCATATACAATAAATAACAAACTGACAACAAACTAGACAATCTAAT CCATTTTCTTTGCAATTAATGTCCTATCAGATCCTTCCTATATATCTCTGTCTCTTGGTGTTACTTATTATATACTATTT ATTTGTTAATTTGGTATGCCAGTTGAGTTGTGTACTTGTATACATACTGCAGATAAAGAAAAATTAGACAGTGAGCTTTA TTTTTTCTAATCATTACTTACAGCACAGTTCTTTCTGAGCTATCTTCCAGATATAAAGAAGAGCCCTGGAATGGTTGGGG GAATTCTCCTGCAAGTTTCTGGTTTTGTTAGAAACATCAGCATTCCCATGCTTTAGGAAGATAGCTTCACTGAGGTATAG CTGATTTATCTTAGTTGTTTTTAGCTTTAATGAATAGAACTTGTGGACTCTACCACTGAGGGTTAGTTCTACTAGGAGGT CTAATTGTGTTGACTCAGAGGTCTTCGGTTTGAGCTGAGTATCATTTAAATTGGTCTGTGCTGTAATGGAGTAACCTTCC CTTACCCTAAATTTTTATGGACTAAATTTTTGCTAAGCTGTCTGTGTTGAACCATCTTAATCAATTTCTACGATTAAAAA TTGAAGGATACATGATTGCACTTTTCTTAGAAGTATGTTCTTTTCTTTTGATTTGGGCCTTATTTTTGTAATTGAAGGAA TGAAAAATTAAGGGTTAAAACAATTATTCATTTGTTTTGTCTATCTAAAAGAAGTTGTAGTGCCATAAGAAATATTCATA TCTACCAATAATTTATTTTTAAATCAAAGAATCGACAATATTAGTCTACAAGTCAATACATATTATTACTGTAAAATGCA TAACAAAATGTTAATGTAGACTATAATATACAAGTTTGCACTCATGTCTAGATAACTAGTTTTATATTTTCAAATTTTTA TTTATAATTCATTTATCTGTGGATAGATCTTGAAATGACACATGAGTAGTGTTTTCAAAATGGCTGAGGTTCTTACTGCT GCTCCATGTTGCAGTCCAAAGGAAGAAGCTGAGCAGAATCATCTGGCAGAAGCCATCATGGTTTGTTATTGTCTTGGGAT GGGGGTGCCAAAGGGTGAGAATAAAGCATTTGAGCATAAGCAGAATCCGCAGAGTCAGGAACATAATTTGAAGGATGATG AATCTGTGAGTAAGCGACATATTGTTGCTGCTGATGCTGACTAGTAGGAATCTGAACTAACTGAGGCAAGGGAGCATTTC TTAGGAGGTTGTAAGCGGAAGATGATGGAGCCGCACTTCAAGATATAGTTGTGGCAGATTCACCTACATTAGCATGCTGC GCTGACAAGTTATATGCTTGGGCCTGTCTTGCTGACAAGATATTGTTACTGATGCTGCTCACTAGTAGGAATCTAACAAA CTGAGGCAAGGGAACATTTCTCAGGGAATTGTTATAAACAGCAGATGATGGAGCAGCATTTGACTAGCTAGAAGAGATAG TTGTGCTGGTAATAACCCGTTCCAGATTGAATTTGAACTTGGTCTTGATAGATTACAGGTTTCGGGTATGACACTGCAGT TAAAAGACATTTGTTACTGCAGAACATGTGACACAATAACAAATCAATCTTTCAATCAAGAAAACAAAGAGGTAAATGAA GTATAATCAATTGTATGATGTTACCAAGTGTCTTTGGACATTTGTACTATGTAATTTTATTTATTATATTTTAAGTTTAT GTTCCCTTTGTAGTAAGCGAAGTTTGATTTTGGTCTCTAATCTGAATAAAG
CDS sequence (LotjaGi2g1v0273700.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTTGCGAAGAAGAAGGTTCCCAATCCTTCAACATTTGGGCGTTTTCTCAAACCCTAGGAGCTTTCTTCTTCACCC ATTACATTCCCCTCAATATTCATCTTCCAAGCGGAACAGGGAGCAGTTATTGAATTCCATGAGAGATCTCAAAACTGTCG ATGCTGCTTTGGATTTCTTCAACAAAATGGTTGCAATGAACCCTTTCCCATCTGTCAAAGACTTCAATTGTTTGTGCAGC ATTGTTGTGAAGATGAAGCATTACACCACCGCCATTTCGCTAATCAAACGAATGCATTCGTTGGGGGTGAAAATTGATTC ATGGACCCTCAATATTGTCGTCAATTGTCTCTGCCGATTGAAGCGAACGGTATTCGGGTTATCGATTTTAGGGCTTATGT TTAAAATTGGTTTGGAGCCGACGGTAGTGACGATTAACACCATTGTTAACGGGCTTTGTGTGGAGGGCAATGTGGAACAA GCATTGGGGTTAGCTGAGCGTATCGAAAATATGGGCTATGAATCGGATAGTTACACCCATGGAGCAATAATTAATGGATT GTGTAAGGTAGGTGATACTTCTGTCGCTATTGGGTATCTAAGGAAGGTGGAAAAAAGAGGTTGCAAATTGAATGTCGTAG CTTATAGTGCAATTATGGATGGTCTTTGCAAGGATGGGTTGGTACCTGAGGCTTTGGGTTTGTGGTCAGAAATGACTGGT AAAGGTATTCAACCTACTCTTGTCACCTACAATTGCTTAATTAAAGGACTTTGTGATTTTGGTAGATGGCAAGATGCTGC AATTCTACTTGGTATGATGATGAAAAAGGGAATCATGCCTGATGTGCAAACTTTCTCGGCTATCGTTGACAATTTTTGCA AAGAGGGGATGATTACAAGGGCTGAAAGTGTAATAGGTTTCATGGTTCGTATGGGAGTGGAGCCTAATGATTTCACCTAT AACGCAATGATTAATGCTCATTGTTTGCAAAATCAAATGAAGGAGGCCATGGATGTTCTTGATATGATGGTTCGCAAGGG TTGCTTGCCATGCACTGTAACTTATACGTCATTAATCCATGGGTGGTGTAAAATTAAAAACATGAATAAGGCTATGTCTC TCTTGTGTGAGATGATTAATAAAGGATTAAGTCCAAACATCTGCACATGGAATGCTCTTATTGGTGGGTTATGCAAAGTA TGGAAACCTCTAGCTGCAAAAGAATTGATTTTTACAATGCAAAAGCATGGCCAACTTCCCAATCTCCGTACTTATGCTAT TATTTTGGATGGCCTATTCAAATGCAATTTTTATTCAGAGGCAATATCATTATTTAGGGCATTGGAACAGATGAATTTGG ATCGTCATATTTTAATTTATAGTATTGTACTTGATGGGATGTGCAGTTTTGGAAAACTGAATGATGCGCGGGAACTCTTT TCTTGTCTACCAGCTAAAGGTTTGAAAATTAATGTTTATACATATACAATAATGATTAAAGGCCTATGTAAAGAAGGATT ATTGGATGATGCTGAAGACTTACTGATGAATATGGAAGAGAATGGCTGTCCCCCTAATGCTTGTACTTATAATGTTTTGG TTCAAGGATTACTGCGAATATATGATATTTTAAGGTCAGCAAAATACCTTCAACTAATGAAAGGCAAAGGTTTTTCTGCA GATGCTACCACTACAGAATTGCTTATCAGCTCCTTCTCTGGTATTAAAGGAGAAAATGCATTTCAAGAGTTTTTGCAGAA ATTAGTTGGGGTATAA
Protein sequence (LotjaGi2g1v0273700.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLRRRRFPILQHLGVFSNPRSFLLHPLHSPQYSSSKRNREQLLNSMRDLKTVDAALDFFNKMVAMNPFPSVKDFNCLCS IVVKMKHYTTAISLIKRMHSLGVKIDSWTLNIVVNCLCRLKRTVFGLSILGLMFKIGLEPTVVTINTIVNGLCVEGNVEQ ALGLAERIENMGYESDSYTHGAIINGLCKVGDTSVAIGYLRKVEKRGCKLNVVAYSAIMDGLCKDGLVPEALGLWSEMTG KGIQPTLVTYNCLIKGLCDFGRWQDAAILLGMMMKKGIMPDVQTFSAIVDNFCKEGMITRAESVIGFMVRMGVEPNDFTY NAMINAHCLQNQMKEAMDVLDMMVRKGCLPCTVTYTSLIHGWCKIKNMNKAMSLLCEMINKGLSPNICTWNALIGGLCKV WKPLAAKELIFTMQKHGQLPNLRTYAIILDGLFKCNFYSEAISLFRALEQMNLDRHILIYSIVLDGMCSFGKLNDARELF SCLPAKGLKINVYTYTIMIKGLCKEGLLDDAEDLLMNMEENGCPPNACTYNVLVQGLLRIYDILRSAKYLQLMKGKGFSA DATTTELLISSFSGIKGENAFQEFLQKLVGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 30 | 171 | 142 | 5.6E-21 | ||
| ProSiteProfiles | 36 | 70 | 35 | 5.47 | ||
| PANTHER | 43 | 206 | 164 | 6.5E-124 | – | |
| PANTHER | 43 | 206 | 164 | 6.5E-124 | – | |
| ProSiteProfiles | 71 | 105 | 35 | 6.906 | ||
| ProSiteProfiles | 106 | 140 | 35 | 8.923 | ||
| Pfam | 140 | 189 | 50 | 2.4E-10 | ||
| ProSiteProfiles | 141 | 175 | 35 | 9.405 | ||
| TIGRFAM | 143 | 176 | 34 | 0.0013 | ||
| ProSiteProfiles | 176 | 210 | 35 | 9.843 | ||
| TIGRFAM | 178 | 212 | 35 | 1.8E-5 | ||
| Gene3D | 189 | 300 | 112 | 2.7E-31 | ||
| PANTHER | 200 | 425 | 226 | 6.5E-124 | – | |
| PANTHER | 200 | 425 | 226 | 6.5E-124 | – | |
| Pfam | 211 | 259 | 49 | 2.5E-16 | ||
| ProSiteProfiles | 211 | 245 | 35 | 12.463 | ||
| TIGRFAM | 213 | 246 | 34 | 8.5E-7 | ||
| ProSiteProfiles | 246 | 280 | 35 | 12.167 | ||
| TIGRFAM | 248 | 282 | 35 | 1.1E-6 | ||
| Pfam | 276 | 308 | 33 | 6.1E-6 | ||
| ProSiteProfiles | 281 | 315 | 35 | 11.159 | ||
| TIGRFAM | 284 | 316 | 33 | 1.0E-5 | ||
| Gene3D | 301 | 406 | 106 | 2.8E-31 | ||
| Pfam | 311 | 344 | 34 | 2.8E-10 | ||
| ProSiteProfiles | 316 | 350 | 35 | 12.792 | ||
| TIGRFAM | 318 | 350 | 33 | 2.0E-9 | ||
| PANTHER | 319 | 576 | 258 | 6.5E-124 | – | |
| PANTHER | 319 | 576 | 258 | 6.5E-124 | – | |
| Pfam | 350 | 399 | 50 | 1.8E-15 | ||
| ProSiteProfiles | 351 | 385 | 35 | 11.882 | ||
| TIGRFAM | 353 | 387 | 35 | 2.8E-9 | ||
| ProSiteProfiles | 386 | 420 | 35 | 9.679 | ||
| Gene3D | 407 | 586 | 180 | 1.1E-35 | ||
| ProSiteProfiles | 421 | 455 | 35 | 8.594 | ||
| Pfam | 424 | 452 | 29 | 0.11 | ||
| ProSiteProfiles | 456 | 490 | 35 | 8.835 | ||
| Pfam | 458 | 504 | 47 | 1.9E-12 | ||
| ProSiteProfiles | 491 | 525 | 35 | 13.954 | ||
| TIGRFAM | 493 | 527 | 35 | 5.3E-11 | ||
| ProSiteProfiles | 526 | 560 | 35 | 7.903 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0273700.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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