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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0282500 |
| Transcript ID | LotjaGi2g1v0282500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome b561; TAIR: AT1G26100.1 Cytochrome b561/ferric reductase transmembrane protein family; Swiss-Prot: sp|Q9C540|ACFR4_ARATH Probable transmembrane ascorbate ferrireductase 4; TrEMBL-Plants: tr|I3SU65|I3SU65_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0282500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75495928..75498518) extracted from Lotus japonicus Gifu genome v1.2.
TCATACATCTAATTTCCTAAAAGAATCACATATAAGCTAAATAAAATAACCCTTTAACATATAGTTATTTAATTTCCCTA AAACCCCTTTAGTACAGCACTCACTTTACCACTGAAATCAGTACACAGTCACATACCAAGGTGGATCTAGAACAGAGTTG TCGGCATCTCTCAGTAGAGTACACAGAGATACCAACACCAACACCAACCACCACTTCTTATGGCCAATCTCTCTCCCACA CTCCCATCAGTACCTCTCCTCTTCTTTGCAAGAATTTCAGGGCTCACAGTAGCACTGCTTGTTCTCTTCTGGGCTCTTGC CTTCAAATCCAGCTTCCTCACTCACTCCCTTTCCCAACAAGACCTCATCTATGCAGTACACACCACAACTTGCTCTTTTT TTCTGCATTACTTCCTTTCTTCATTCCCTGATTAGAAAGTTACCTTTTTCCAATTAGCTAGCTAAAGGAGCTTCCTTTTT CCTGTGTGTTTTTTTACTGCAGATTCTTCATCCTCTTTTGATGGTCATTGGATTTATCATCTTAAGTGGAGAAGGTAAGC TTAATTAATTAGCTAGAAACTAGTTTTAATTATCAGAGAAACCCTGAAATGTGATACATTATATCATGTTATTGGTCATT AGGTGATTTTTTGTAATTTGAAAATGAAATGCTGTGCAGCAATCTTGGTGCATAGATGGTTACCTGGGTCTAGGAGCTTG AAGAAATCAGTGCACTTGTGTCTTCAAGGGGTGGCTTTGACTTCTGGGATCTTTGGGATTTGGACTAAATTTCAGGGACA GAATGGGATTGTGGCTAATTTCTATAGCCTACATTCATGGATGGGTTTGCTTTGTGTATCCCTCTTTGGAGCTCAGGTAA TTAATTCATCTTCATATTCTTCCAGGATTATTTCTTCATATTTTCTTAACTTAATTAAAATCTTTTGAAAACTATGCTCA ATTGTAATCCAGTTATATATGTCTTAATAGCGCTCATTAATCAGGATAAATTGTTTTAATGAAGCTGGTCTACTTTTCAA TCAATCTTTGGTTTTTTAATGAAATTATTTTGGCAAAATTAACTAAGCTGAATTCAATAATGTCACTATGTTCATAAATA GGGGCTCGATAATTGATATTGATGATGACATTGTGGCCCCTCTGTCTCTTTTTAGTTTTTAGAAGGAAGACATATATTGC GTTAACCCACCATTTTTCTTGAAATCATGAAAAACAAATTCATTAGACGAAGTCCCGTAAGAAAACTATACTTGTTGCAA ATGTTAGTAAGATACTTTTAATACAATTTTTTGACATATGATATATTATTAAGTGGAATTTCAGCCCCTAACTCACTTTC TAGTCACTTGTATGTAGTCTAATAAAAAAATGTATATAAAAAAATATGCTACAAAAATATTTATAATTTATAATTTTTTA AAATCCTTTTGTCATTGTTTTGAACTCAACGAATACTTTTGATATTGATACTGTATTTCTAGTTGTGTACTTTTTATAAA GTACAATTAATTTAAATAATGAGAATTGAATTTAATTGATGATAATAATTGTTTTTACAACTAGAGCTTATTATAATAAT ATAATATTTGAAAAATAAGGAAATGATCCTACCAATACCATGTTAGTAACATGTAAGCAACCTACACTTATCTTAATTAA TAGTGTACCCTGTGATAAAACATTGGATAGAATATTATTTTAAGCAAGAGCACTTGTTCAAGGGGGGTAAAAGAGCACAA AGATACACTTTGGTTCTGGAAATGTGTCGGTCGTTTACATTCATCCCAGGTTGGATCAAATGAAACCAAAAATAACAACC AAAGTTTAAATAATTTGTAACAGCTAGCGTTTATTTTCACTGTAATAATTCATTTTACCAGCAATGTTCAGAGTGGTAGT GGCTCTGGTTTCTTGAGCTTACAGTCTTAAGTTCGATCCCTGGATCCATGTTTATGAAAAACAACCCTGTCGAGAGGGGT CTCTGCTTTGATGGTTGATAGTACTCCAAGGGTTCCCTATGGAGTATACCTATGGTGGGGAAAAAATATTTTATCATTTA CTAATATTATATTTCCATTTGCACTATAAAAATAAAAGAGATTATATTTTGGAGCTGATTTTACAGTGAAGGTCAGCTCT TATATAATCTTCGCCATATATGTGCAGTGGTTGATGGGGTTCTTGAATTTTTGGCACCGGGGAGAGGCGCGTTCAGCGAG GATAAGGATCTTACCTTGGCATATCTTCCTGGGACTATACACTTATGGATTGGCAATAGCAACTGCTGAAACTGGATTGC TGGAGAAATTGACATTATTACAAACAAAGAGAAATGTACCTAAACACAGCACTGAGTCCATTGTTGTTAATAGCTTAGGT TTGGGTCTTGCCCTCCTAAGTTGCTTTGTTATTTTGGCTGCTGTTTCACCTAAGTATCAATCATCTCTTCAAAGCAAACT TTTGTACTTAGACACGAGGTGTTTGTCATCTTAATCAATAAAACGCTACACTGGCTGATTTGCCTTTTCTGATCAATAAA TTCATATGCCTTACATTGTGGTCATAGTGAG
CDS sequence (LotjaGi2g1v0282500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAATCTCTCTCCCACACTCCCATCAGTACCTCTCCTCTTCTTTGCAAGAATTTCAGGGCTCACAGTAGCACTGCT TGTTCTCTTCTGGGCTCTTGCCTTCAAATCCAGCTTCCTCACTCACTCCCTTTCCCAACAAGACCTCATCTATGCAATTC TTCATCCTCTTTTGATGGTCATTGGATTTATCATCTTAAGTGGAGAAGCAATCTTGGTGCATAGATGGTTACCTGGGTCT AGGAGCTTGAAGAAATCAGTGCACTTGTGTCTTCAAGGGGTGGCTTTGACTTCTGGGATCTTTGGGATTTGGACTAAATT TCAGGGACAGAATGGGATTGTGGCTAATTTCTATAGCCTACATTCATGGATGGGTTTGCTTTGTGTATCCCTCTTTGGAG CTCAGTGGTTGATGGGGTTCTTGAATTTTTGGCACCGGGGAGAGGCGCGTTCAGCGAGGATAAGGATCTTACCTTGGCAT ATCTTCCTGGGACTATACACTTATGGATTGGCAATAGCAACTGCTGAAACTGGATTGCTGGAGAAATTGACATTATTACA AACAAAGAGAAATGTACCTAAACACAGCACTGAGTCCATTGTTGTTAATAGCTTAGGTTTGGGTCTTGCCCTCCTAAGTT GCTTTGTTATTTTGGCTGCTGTTTCACCTAAGTATCAATCATCTCTTCAAAGCAAACTTTTGTACTTAGACACGAGGTGT TTGTCATCTTAA
Protein sequence (LotjaGi2g1v0282500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANLSPTLPSVPLLFFARISGLTVALLVLFWALAFKSSFLTHSLSQQDLIYAILHPLLMVIGFIILSGEAILVHRWLPGS RSLKKSVHLCLQGVALTSGIFGIWTKFQGQNGIVANFYSLHSWMGLLCVSLFGAQWLMGFLNFWHRGEARSARIRILPWH IFLGLYTYGLAIATAETGLLEKLTLLQTKRNVPKHSTESIVVNSLGLGLALLSCFVILAAVSPKYQSSLQSKLLYLDTRC LSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 243 | 243 | 7.4E-127 | ||
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 243 | 243 | 7.4E-127 | – | |
| Gene3D | 4 | 231 | 228 | 1.4E-66 | – | |
| Phobius | 12 | 33 | 22 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| ProSiteProfiles | 16 | 221 | 206 | 36.81 | ||
| Phobius | 34 | 52 | 19 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 53 | 74 | 22 | - | – | |
| Pfam | 54 | 184 | 131 | 1.2E-38 | ||
| CDD | 54 | 187 | 134 | 3.56987E-63 | – | |
| SMART | 54 | 179 | 126 | 2.7E-44 | ||
| Phobius | 75 | 85 | 11 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 86 | 104 | 19 | - | – | |
| Phobius | 105 | 123 | 19 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 124 | 144 | 21 | - | – | |
| Phobius | 145 | 155 | 11 | - | – | |
| Phobius | 156 | 180 | 25 | - | – | |
| TMHMM | 157 | 179 | 23 | - | – | |
| Phobius | 181 | 199 | 19 | - | – | |
| TMHMM | 199 | 221 | 23 | - | – | |
| Phobius | 200 | 221 | 22 | - | – | |
| Phobius | 222 | 243 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of LotjaGi2g1v0282500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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