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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0283400 |
| Transcript ID | LotjaGi2g1v0283400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA pyrophosphohydrolase; TAIR: AT1G68760.1 nudix hydrolase 1; Swiss-Prot: sp|Q9CA40|NUDT1_ARATH Nudix hydrolase 1; TrEMBL-Plants: tr|A0A0L9UU59|A0A0L9UU59_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0283400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75576622..75580660) extracted from Lotus japonicus Gifu genome v1.2.
TTGATTTTAAAAGCCATTGCTTGAAGTCCAAGCAGTCAAAGCACGAGTCAGGTTCCGCGAAAAGACGCAAAAGAACAAGT GTCGTTTAATAACTTGTCAAGACCAAACCCAATACAAAACGACACCATTTTTCAACATCAAAAAACAAACGCAGCAGAGA ACACAAAAAGACACGACACAGGAGAGAAAAATGGACAACAACGGAGACCAACCAGTGCCGAGGGTGGCGGTGGTCGTGTT TCTCTTGAAGGGAAGATCTGTCCTCCTCGGCCGCCGCCGCTCCGCCGTCGGAAACTCCACCTTCGCCCTTCCCGGCGGCC ACCTCGAATTCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTTTCCCATTTTTCATTCCATTTTTCACAT CAGATTTTCTCAGCTCGATGGTTTTTCAGGGGAGAGCTTTGAGGAATGCGCGGCGAGAGAGATGAAGGAGGAAACGGGAT TGGAGATTGGAAAAGCTGCAGAGCTGTTGACGGTGACCAACAACGTGATGTTGGAGCAGCCGAAGAAGTGCCACTACGTC ACCGTGTTCATGAGGGTGGTGGTGGATGCGGCGGCAGATCAGGTGCCGCAGAATCTTGAACCTGAAAAGTGTGATGGTTG GGATTGGTATGATTGGGACCATTTGCCACACCCTTTGTTTGGGCCTCTTCACAAGATGGTCAGTTCGGGCTTTCATCCAT TTCCTCTCTGATTTCGTTTTGTACTAATTAATCACATGATTTGCTTAAATAGTAGTAATTACATACATGGTAGGCTCGGC TCGCATGAGACTAATCCACTCGATACCCAGAGAACTCATTAAGTGGTGGATAAGTCTTTCCCTACTAATTCTTCCACGTA CTCAGAATCGTATCGTAGACTAGATGCTTATATAGTTCAATTATCTACAAATTGTGTTAGACATTATTGGTAGTAGTAGT AGTAGTAATTGTTTTATGTGTTGTCTAATACTTAATTGCCGGTTGGGACCCTATATCATGTGTAATGTGTTGTTTGAACT CCGTTTACTACTATTAGGTGGGTACTGTAATTTAGCTTGAGCTGCATATGTAAGTGGCTTGTGATTGTTTTTTTGTACAC TAGTAGATTGTGATTGGGAAGAAGCTACTTTGTTGCGTGGAAATAGGAAAGCAATGTGCTATAGGAACTAGTAAAAATAG TTAGTAATTACTTTTAACAATCATATAATTGATGGTTCGGATTGATGAAATTTTGGAATTAAAATTATAGAAGTAACATT TCATCTATCCTTTGTTTCTTTGTTCACCGATATCAATCATGGCCATTGCCGGATCTACTCATGCCCCCAAGGAAGTTCAC CCTTTTTTTTGGGCAATGGATCATGATTCCATAAAAGAGGCACAAAAGGCCAAGGAACAAGGCAGAGCCCAGGAGGGTTA GGAAGTCAACCTCTAATACAGCATGGATACAACAAAAACAAGTGAGGGACACTAACCCAAAGTCCACACTGGACAGGGAA CAGAAAGCTACAAGGTAAATGAAACACAACATAAACCAAACATAGGAAGCAGCATCCTATTGCATCTTGTCATTGACCAT GAACACGATTGTGGGCACTTCTAGCAGCAGTATGCGATTGAATGTCACTTCCAACAGCGCAGACCCCAACCTCTTGCCAC TTCGATTAGGATCAAGGCTAGCACGGCCACTATGGAGGAATCAGAACCACAGAGAAGAGCCCCTCTCCCCAGCACTAATC GATCCTATAGAGTCCCCTGGATCAAAATCCCCCCCTGGGACCTTGGAGCTTAATGTCCATGCTACCTGCTTCCAATCCTC CAAGAAAGGAACGATTGCAGTAGTGATCAAGGATGATGAAGGCAGTACTGTCCTATCCCACTCAAGGTCAATCCTGGCAC ATGAACCACTAGTGGCAGAAGGACTAGCTATCCGAGAAGCTTTACTGTTGGCTATGAACCTGGAGCTCAGCAAAGTCTAC AGTTGCTCTGATAACCTTAAACTAGTTTCGCTGATTCGTGAGCATAGGTATGCATGGAGAAGTGTTTATGCCATTTTGAG AGATATTCAGAGCTGCAGGAAGTTCACCCTTGTGGATGAATCAAATGCTTCAAAATATATGGGCTAAGTAGGTAGATATC AAAGTGATGGGCCTCAATGATGACTATTTTCTTGATAGGTTCTTGTTCTGGGAGCCTCCAAAACCGACCGTCCCCCGAGG ACGATCGGCCCAATCTCGTAACTCAAACTCCACAACCCTTGTGGACCAGAGCTAGGGGACTACACTGTTCTGGGAACTTG GGAAATACCTAGGTCCGACCCCACACTCCCACAAAGGACAACGGTGGGACCCAGGGCCTAGGAGTTAACTTCCCTCAACC ACCCTAGAAAGCTAGGGACTGTACCTACCACACGTGGAATCCTGGACCGTGAGATCTCACTGGCGTCGCAGGAATGACAA GAGGATCGAACGATTGGGAGCCACCTGCATACAGGGCATGCATGACTATTCAGAGAACCCTAGTAACTCCTCCGCGAAAA CACCGCCCTTAATGCTCATGCTCCACTGTGGCAGTGGACCAGAGCTGGGGGACTACTGTTCTAGGAAACCATGGCACGAA CGACCAGAGCAGGCCCAGGGCGGAAACCTAATGAAACAGCCACCACCGCCCGTAGACGACCACCGCTCCAGGAAACCCTC GAACGGACGACCGGAGTGGACCTAATGGGACGATCACCCACTAAACGATCGCTACCTCCTCCCGACCCGCTTGGGACGGA GGAGACTTACCTTTTGAGTACAAGACAATCATCGGGCCCACCATGTAAGGGTTGACCTATCCCAACCACCCTACGGTACT AGTGGTTGGAGGCACAGGTCCCAAGGAACCCTGGACCATTGGATCACTGCTTTGCGGCAGGGAGCAACAAAGGATCCAAC GGCCCAGGATGAACCAAGTACGAGCCAGGCATGACGTTGCATGACTCCAACCCTAATTTCCCTTCGTGTATATAAGGAGA GCTCCTCCTCCATATTAAGGTAACTCATTCTCTTCACCTCTTAACTTACACATTCTTCATTCCTCTACTTACTTTAGCAT CGGAGTCCCTTGCAGGAGCCCCTCCCGGGAACGTCCAGATCGCCGGCTTGCCACTCCCCCACCTTTCTCCGCTACCCCCT TCCACGGGTAGTTTGGTCGCTCCTCGATCAGTTCTCTCATGAAAATGATTACCATTTTTCTTTGTTTGAAAGCCCTTGGA TAATTGCAGACCACTACATACCTATGGTACAAAGATAGTGTCTATGTTTAAAGCTATGGTAATGATGTCAAGAAGATTGT TGTATGAGTTAGATTGCTAAAGCCTTTTGAAAAACTTTTCAATGAGAAATTTCTTCAGAGAATAGATAGATTCGTTAGGA ACTATGCTAAAATTTGATATCCATTCATCTATCCATCTAGGGATAAATTTGCTTGTATTTGTGTTGAATTGAACCGAAGT TCGTTGGTGCCTAATTTTACTGTGTTGGGAAAGGAGTACTGCTTGGAGTATGAAGGTCTTCATTTCATATGTTTTCGTTG TGGGAGATATATATAAGCATGAGCTCTTTTTCATAAGCTATCATGAATAGCTTATGAAAATGAGCTCAAAACAGCTTATG GTAGGTCATAAGTTGTTTGCATAAGCTCTCCCAAACACTGACATAAGAACTTATCCTATCAGATAAGCTTAAATAAGCTC TTCCAAACGGTGTCATAGTCATTGAGGGCCGCACAAAGGCTACCTAGTGTTAACATGACTAGTGTCTCTATCGAGTGATG TTACACATCTGATTCCATAAGAACCGGTTGAGTTGACACCAAATCTACATGTTGCCTATGTTTGATGGCTAGTTTATAAG ACTCTCTGGTTCTTAATATAAGAATCAACCAACTATTTTACACTTCTTAAGAAAGTATGTTAATTTAGTTAGAGTAAAAT ACACTCACCCCCTCAAGGTTTATAAGAATGACACTCCAC
CDS sequence (LotjaGi2g1v0283400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACAACGGAGACCAACCAGTGCCGAGGGTGGCGGTGGTCGTGTTTCTCTTGAAGGGAAGATCTGTCCTCCTCGG CCGCCGCCGCTCCGCCGTCGGAAACTCCACCTTCGCCCTTCCCGGCGGCCACCTCGAATTCGGGGAGAGCTTTGAGGAAT GCGCGGCGAGAGAGATGAAGGAGGAAACGGGATTGGAGATTGGAAAAGCTGCAGAGCTGTTGACGGTGACCAACAACGTG ATGTTGGAGCAGCCGAAGAAGTGCCACTACGTCACCGTGTTCATGAGGGTGGTGGTGGATGCGGCGGCAGATCAGGTGCC GCAGAATCTTGAACCTGAAAAGTGTGATGGTTGGGATTGGTATGATTGGGACCATTTGCCACACCCTTTGTTTGGGCCTC TTCACAAGATGGTCAGTTCGGGCTTTCATCCATTTCCTCTCTGA
Protein sequence (LotjaGi2g1v0283400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNNGDQPVPRVAVVVFLLKGRSVLLGRRRSAVGNSTFALPGGHLEFGESFEECAAREMKEETGLEIGKAAELLTVTNNV MLEQPKKCHYVTVFMRVVVDAAADQVPQNLEPEKCDGWDWYDWDHLPHPLFGPLHKMVSSGFHPFPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 146 | 145 | 7.1E-41 | – | |
| PANTHER | 4 | 146 | 143 | 3.3E-60 | – | |
| SUPERFAMILY | 4 | 137 | 134 | 5.28E-29 | ||
| ProSiteProfiles | 9 | 147 | 139 | 14.821 | ||
| CDD | 10 | 134 | 125 | 8.08464E-58 | – | |
| Pfam | 11 | 130 | 120 | 2.1E-19 | ||
| PRINTS | 38 | 52 | 15 | 4.3E-7 | ||
| ProSitePatterns | 43 | 64 | 22 | - | ||
| PRINTS | 52 | 67 | 16 | 4.3E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0283400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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