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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0287300 |
| Transcript ID | LotjaGi2g1v0287300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase; TAIR: AT3G12500.1 basic chitinase; Swiss-Prot: sp|P06215|CHIT_PHAVU Endochitinase; TrEMBL-Plants: tr|Q7X9F5|Q7X9F5_9FABA Class Ia chitinase; Found in the gene: LotjaGi2g1v0287300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76035300..76037801) extracted from Lotus japonicus Gifu genome v1.2.
GTGGATACATTACAGTACATATGGATATGATTATAAATACAGAACATGCCGTGGGGTGGAAGGAAGGAAGTCAAGTGAGT AAAAGAAAATGAAGATGAAGTTAGCCATAGCAGCTGTGTTAGCAGTGTCGTTTGTAATAGGAACCTGCATGGGAGAGCAA TGTGGAAGTCAAGCAGGGGGTGCTGTTTGCCCCGGTGGGGCATGTTGCAGCAAATACGGTTGGTGCGGTTCGAGCTCTGA CTACTGCAGCAATGGTTGCCAGAGCCAATGCGGTGGCAGTGGAGGTGGAGGAGGCGGTGGTGGTGGTGGTGGAGGCGGTG AAGGTGTTGGGAGCATCGTCCCGAGGGATGTCTTCAACCAGATGTTGAAGCATCGTAGTGACGGAGGGTGCCCAGCTAGA GGGTTTTACTCGTATGATTCTTTTATTTCAGCTTCCAAGGCTTTCCCTAGCTTCGGTAACACTGGGGATGTCGCCACTCG CAAAAGAGAGATGGCTGCTTTCCTCGGCCAAACTTCTCATGAAACTACTGGTCAGTTTTTGATATCCTGTTGGTTTTATT ATTAAGGCCAAGACGTACCAATTCTTTTCATAAAGTTATGTGTTTGATTCGGGCTCTAAGAAAGAGATCTATTTATATAC CTTATTAATCACAAATTAATTTCTCTTGTATGTATGATGACAGGGGGATGGCCAAGTGCACCAGATGGCCCATACGCTTG GGGATATTGCTTCAATAAGGAACGAAATCCAAGTGACTATTGCTCTCCAAACTCTCAATACCCTTGTGCTCCAGGCAAAC AATACTACGGTCGGGGTCCAATGCAAATCTCATGGTATGTGTTGTTATGTTATAGGGATGACAATGGGTAGGGTCTGGAT AGGGTACTATAGTACCCATTCTCATACCCGCGTTTTAAAAAATTACCTGTACCCGTCCTCATACCCGCGTGGGTAGCAAC TTGAATGCTCGTCCCCGTACCCTCTGGGTACGTATATGCCCGTACCCGTGCTTATTACCCGCAATTTAGCTAACCAAAAT ATATTTTTCACTATTTTTGTTAATAGAAAACAAAAAATACAACTTACTTTTTAAATAAAAAACACTAATATAAATACAAA AGATTATCTACGTAACAAATAAAATCATTAAACTAAGAATATATTTTTTTAGAACGAATAAGCAAGAAAGATATAACTTA ATTTTTAATTTTGGATTTATAATATAGGCCTAAAGTTGTAGGTTATTATCTTACTAATTTTAAAAATAAGTGGGAGTAAA TTAGCAATGATTATGAATACTTTAAATAGTCACCTATTTCTTAAAATAATTAAGTTTGAAAACTATAGGTTAAGTTGATT TGTTCATATAATACTAAAAAAAAAAAATAATAATAACAATATGTGTGTGCGGGTATGCGGCGGGAGTACCCAACCCGCGC CCATACCCATTACTTTTTGCGGGTAATTACTCATACGGCCATACCCAACCTCATACCCATCTAGCGGGTTTTTACCCTAC CCATAGTGGGTATTTTTTGCGGGTACCCTATGGGTCCAAGACCCATTGCCATCCCTATTATGTTATGTCCTAGAGTATTT CCTTCGTTTTAAAATTGTTTGTTATACCACATTTTATTTTCATATTACGAATTCTCATTAATTACTCACATTAAATAATA GTGTTTTACTCAAATTATTACTCGATGAGCTCTTAAACTGTATGCATAAAACAATCATTTTGCAATAGAAAGAGTACTAT AATTAATTGATTAATTAATAAAATTATTGACTAACCAATGTGAAATTAGTAATCATGATGAGTTGAATTGAATATTGAAG GAACTACAACTACGGGCAATGTGGAAGAGCAATAGGTGTGGACTTATTGAACAACCCAGATGCAGCGGCAAATGACGCAG TGGTGTCGTTCAAGACAGCGATCTGGTTCTGGATGACAGCACAATCACCGAAGCCGTCATGCCACGACGTCATCACCGGA AGATGGGGTGGTGATCAGGCAGGGTATGGCACCATCACCAACATCATCAATGGAGGACTTGAATGCGGGAGAGGACAAGA TGCCAGGGTGCAGGATCGCATTGGATTTTATAAGAGATATTGTGATTTGCTTGGTGTTGGATATGGCGATAACCTCGATT GTGGTTCGCAGAGACCATTTGGCACCAATTCACAGCCCCTTATCGACACCATGTAGTTATTTTTTTGTTTTTGTTTTAAT CACCAGTGTGGGTTCATTTTGTGGTTTTTGTTTTTTTTTTATTTGTTGTTGATGTTCTCATCTCTGATCACATATGATGA TCACCTTCTATGAAATAAAATATTATGAACATTTTCTATCCGATTCCTGAACTTCACTCTAATAAAGGAATCCAGATCCT CTACGATAACCGTCTTCCCCAACCTCTCTGCGGCAGAGTCTTCGACTGTTTGATTCATCCAACAGTTAAGAATTTACAAG CATAAAAAAAAAACGTTTTAAC
CDS sequence (LotjaGi2g1v0287300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATGAAGTTAGCCATAGCAGCTGTGTTAGCAGTGTCGTTTGTAATAGGAACCTGCATGGGAGAGCAATGTGGAAG TCAAGCAGGGGGTGCTGTTTGCCCCGGTGGGGCATGTTGCAGCAAATACGGTTGGTGCGGTTCGAGCTCTGACTACTGCA GCAATGGTTGCCAGAGCCAATGCGGTGGCAGTGGAGGTGGAGGAGGCGGTGGTGGTGGTGGTGGAGGCGGTGAAGGTGTT GGGAGCATCGTCCCGAGGGATGTCTTCAACCAGATGTTGAAGCATCGTAGTGACGGAGGGTGCCCAGCTAGAGGGTTTTA CTCGTATGATTCTTTTATTTCAGCTTCCAAGGCTTTCCCTAGCTTCGGTAACACTGGGGATGTCGCCACTCGCAAAAGAG AGATGGCTGCTTTCCTCGGCCAAACTTCTCATGAAACTACTGGGGGATGGCCAAGTGCACCAGATGGCCCATACGCTTGG GGATATTGCTTCAATAAGGAACGAAATCCAAGTGACTATTGCTCTCCAAACTCTCAATACCCTTGTGCTCCAGGCAAACA ATACTACGGTCGGGGTCCAATGCAAATCTCATGGAACTACAACTACGGGCAATGTGGAAGAGCAATAGGTGTGGACTTAT TGAACAACCCAGATGCAGCGGCAAATGACGCAGTGGTGTCGTTCAAGACAGCGATCTGGTTCTGGATGACAGCACAATCA CCGAAGCCGTCATGCCACGACGTCATCACCGGAAGATGGGGTGGTGATCAGGCAGGGTATGGCACCATCACCAACATCAT CAATGGAGGACTTGAATGCGGGAGAGGACAAGATGCCAGGGTGCAGGATCGCATTGGATTTTATAAGAGATATTGTGATT TGCTTGGTGTTGGATATGGCGATAACCTCGATTGTGGTTCGCAGAGACCATTTGGCACCAATTCACAGCCCCTTATCGAC ACCATGTAG
Protein sequence (LotjaGi2g1v0287300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMKLAIAAVLAVSFVIGTCMGEQCGSQAGGAVCPGGACCSKYGWCGSSSDYCSNGCQSQCGGSGGGGGGGGGGGGGEGV GSIVPRDVFNQMLKHRSDGGCPARGFYSYDSFISASKAFPSFGNTGDVATRKREMAAFLGQTSHETTGGWPSAPDGPYAW GYCFNKERNPSDYCSPNSQYPCAPGKQYYGRGPMQISWNYNYGQCGRAIGVDLLNNPDAAANDAVVSFKTAIWFWMTAQS PKPSCHDVITGRWGGDQAGYGTITNIINGGLECGRGQDARVQDRIGFYKRYCDLLGVGYGDNLDCGSQRPFGTNSQPLID TM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PIRSF | 1 | 312 | 312 | 1.4E-125 | ||
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| PANTHER | 5 | 314 | 310 | 3.7E-152 | – | |
| PANTHER | 5 | 314 | 310 | 3.7E-152 | – | |
| Phobius | 5 | 17 | 13 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| ProSiteProfiles | 22 | 63 | 42 | 10.766 | ||
| Gene3D | 22 | 64 | 43 | 2.0E-14 | ||
| CDD | 23 | 61 | 39 | 8.37025E-16 | – | |
| Phobius | 23 | 322 | 300 | - | – | |
| Pfam | 24 | 61 | 38 | 8.9E-13 | ||
| SMART | 24 | 61 | 38 | 1.2E-14 | ||
| SUPERFAMILY | 24 | 64 | 41 | 4.9E-11 | ||
| PRINTS | 32 | 40 | 9 | 2.0E-5 | ||
| ProSitePatterns | 34 | 53 | 20 | - | ||
| PRINTS | 40 | 47 | 8 | 2.0E-5 | ||
| PRINTS | 47 | 54 | 8 | 2.0E-5 | ||
| Gene3D | 77 | 169 | 93 | 3.0E-39 | – | |
| SUPERFAMILY | 80 | 312 | 233 | 9.84E-101 | ||
| Pfam | 83 | 305 | 223 | 3.0E-115 | ||
| CDD | 84 | 305 | 222 | 4.99644E-116 | – | |
| ProSitePatterns | 101 | 123 | 23 | - | ||
| Gene3D | 170 | 217 | 48 | 7.2E-29 | – | |
| Gene3D | 218 | 305 | 88 | 2.9E-32 | – | |
| ProSitePatterns | 226 | 236 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chitinase activity | Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Chitin catabolic process | The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Molecular function | Chitin binding | Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Biological process | Cell wall macromolecule catabolic process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. |
Expression pattern of LotjaGi2g1v0287300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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