Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0294500 |
| Transcript ID | LotjaGi2g1v0294500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G69290.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g69290; TrEMBL-Plants: tr|A0A1J7HII5|A0A1J7HII5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0294500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76920236..76925139) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATCGCTAGAAGGAGGGTTCGAACCTCCGACCTTGTGGTTAACAGCCACACGCTCTAACCAGCTGAGCTATTCCAG CTTCTTGTTTAACATTCGTTCATATTTATTCAAAACCCTTACACTCACTGAAGTGGAAAACAGAGAAACTGAGTCTGAAC CTTCAACCTTGTGGTTAACCTTGACACCATCATCGTCACCTCCTCGTTCCACCGATGCCGCCGCGGAGAAACCCCATTGC ATCAAGCTAGACACTTGACGAAGAATGGCCAAAAGAGTTCTCACCTTTCTTCCCCATAGACAATTCTCATCAATACCTGA AATTCCAAGCCTTTACTCCTTCCTTCAACCTTCTGTGTTTGCTCTCAACAGAAACAGGACACAACCCATTTGTGAAGAGC CCCAAAAGCTTCCAACTTCACCCCCAAAGTCCCTTTCCCTCACCCCTGACCAAGTCTCCACACTCCAAACCACTCTTCAC AAGTCCCTCATCACCAGTGACACTGATGAAGCTTGGAAGTCCTTCAAGTCTCTTACCTCTCATCAAGCCTTCCCACCTAA ACCCCTCACCAATTCTCTCATTACTCATCTTTCATCCCTTGGTGACATTCACAACCTCAAGAGGGCTTTTGCTTCTGCTG TTTTTCTCATGGAGAGGAATCCAATGGTGCTGGAGTCTGAAACAATACATGCCATGCTTGATTCCATGAAGGGTGCCAAC ACTGCTGCCCCTGCTTTTGCTCTTGTCAGGTGTATGTTCAAGAACAGGTATTTTGTGCCTTTTGCCATGTGGGGTAATGT GCTTGTTGAGATTATTAGGAAAAGTGGTAACCTTGCTGCTTTCTTGCCTGTTTTTGAAGAGAGCTGTAGGGTTGCTTTGG ATGAGAAGTTGGAGTTCATGAAACCTGATGTTGCTGCTTGTAATGCAGCACTGGAAGGTTGCTGTTGTGAGCTTGAATCA GTGACTGATGCTGAGAGGGTTGTTGGAACAATGTCTAATCTTGGTGTTAGGCCGGATGAATTGACTTTTGGATTTCTTGG TTATTTATATGCAGTTAAGGGGTTACAGGAAAAGATAAATGAGTTAGAAGTTTTGATGGGTGAGTTTGGTTGCTCAAACA AAAAGGTTTTTTATTCTAATTTGATTAGTGGGTATGTTAAGTCTGGCAATTTAGCTTCTATGGAGTCAACGATTCTCAGG AGTCTGAGTGATGAAGACAGGAAAGATTGGAATTTTGGAGGAGAAACGTTCTGTGCAGTAGTTAAGGAATATCTTCGGAA GGGAAATATCAAGGGTTTAGCTAATCTGATCAACGAAGCTCAGAAGTTAGAACCTTCTAACATTAAAGCTGATAACTCTA TAGGTTATGGTATTGTTAATGCTTGTGTTAGTATGGGATTATCAGACAAAGCTCACAGCATTCTTGATGAAATGAATGCT CTGGGAGGCTCAGTAGGTCTTGGGGTCTATATACCTATCTTGAAGGCTTACTGCAAAGAAAATCGAACTGCTGAGGCTAC TATATTGGTGATGGAGATTAGTAGTTCAGGTCTTCAGTTGGATGTGGAAACCTATGATGCTCTCATAGAAACATCCATGT CCAGCCAAGATTTTCAGTCAGCGTTTTCCCTGTTTAGGGACATGAGGGAGGCAAGGGTTCCTGACTTGAAAGGGAGTTAC TTGACTATAATGACGGGTTTGATGGAGAATCATCGACCTGAGTTGATGGCAGCTTTCTTAGATGAGGTGGTTGGGGATCC TCGTATTGAAGTCGGTACTCATGATTGGAATTCTATCATTCATGCTTTCTGTAAAGCCGGGAGACTAGAAGATGCTAGAA GGACTTTTAGAAGGATGAATTTCCTGCAATTTGAGCCAAATGATCAGACATACTTGTCCCTGATTAATGGTTATGTCTCG GCAGAGAAACATTTTAATGTGCTGATGTTGTGGAATGATGTTAAGCGAAAGCTATCGTCAGATGGGCACAAAGGGATCAA ATTTGACCACAATCTAGTTGATGCCTTCCTGTATGCTATGGTCAAGGGAGGTTTCTTTGATGCTGCTATGCAAGTTGTGG AGAAATCTCATGAGATGAAAATATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACCCATAAAAAGCTCAAA GTGGCAAAGTTGAGAAAAAGAAATACTAAAAAAATGGAAGCAGTTATAGCTTTCAAGAATTGGGCTGGCTTAAATGCATG AACTTGAAGCACTGGCTACTTCTTATCTCAAGGATTAAACCATCATGTCTGGAAGAAACTGCTCAAAATGACAGTTGAGG AGGGATTCAACCTCGCATGATCTTTGGAAGTGAGCTTCGATTTCACTAACTTTAGAGCCCTTCAATTTTGACATTTTTCT ATTTACATGGATAATAACTGCCAGTTTGGGACTAGTAGTTTCTGCTCAACGCAACAATGTTCTGTTCTCTTTTTTCTTCC TGATGTTATACAAAGCAATTAATTGTCAATCTTTTAATTAGTTTATCCAGATAAATCTTGCATTATGAGAAACATGTATC TTTTCTTTCATTATGTTAATCCCTCAGAAGAAAAAAAATTATTTCAAGAGATTGACTGCTTTCTTGCTAAACATTTATGA AGGATGAAAACATGTAACATTAAGGCATATTAAATACATACTTAGTAGAGGTCAATATCATACACCCGAATCTTGCATCT CTGCAAACTTCATTGCTTTTGATTTTCTCTTTCCATGTTTTTTGCTTCTAAACTTGGTTTGCCACAAGATAATGTTCTTC TCCCAAGACTTGTATCTTCAGGAATTCAGGTTTAGTATATTGACTTAGCCTCATATTTTTTCTTTAGTGATAGCAGTTCT GAGTTGAGACTTCATATGCTGCATATTACTATATCACTTATAGTGATGGGCAATGACTTTACTTTCATCATGAAATTCTG AACATTACTAATTTATATGAGATTATAATCACGGAGAGCTGTCACTGATACAATATAAAACATAATTGTAAGTGGCCTTC AGTGTTAAAACAATAATTAGAAATTGAAAAGAGATGTAAATATGTTATAGACTTTATTGGTGTTCCACACTTTTTAGGAC TATGTCATGTTGTAAGTTGTTTAAGGAACATTTTGCTATCACATGGCTTTAATTTGCTTTTTATATTGATGTTGATGTCT CTTCTCTCCACGCCCATAATTTAGTAAAGATAACTTTCTTCCAAGTTCGTAGTGTATTAGTTTTGAATTTTCATATTTTT CTTGTTTGAATTGCTTTCCTTGTTTTCTCTACGATGTAAAAGATTGCCTATGTGCATTCACTGTTGATTTTCTAGTGACT TTGCTCAAGGTCAAACAACAGTTAGTTTCACTTACAGCAATGAAGTTGCTGTCAACAGAAGTGGTTAGACTGTGAGAGAT GCTGTAAGTAACTGAAGCATCAGGTGGAAAAACTTTTTGCCAAGTGAAGTACTGAGTTATTTCCATTTTTTGGGCTGTCT TGAAATACTAGTAAACTGACCTGTGTTTAACGGGTCTTATGGTTGAAGAAGCTTCTTCATAAATATAAAGTCATTCAGTA AATAAAGATTAGTGTAAATAATCAACGAATACTAACAAAAGATTAAAATAAACATTACTCATAACATGAAAATTAAACTT CACTATCATGTTTACTTTAATTATGGGTATGCATAAATAAAACAAATTATGTGGTGTGTTAAATCTACTAGCCTCTTTGT TCTTTGGAATGGCTCCCGCTTGGAGGGTTTCAAGCCAACCAAGGATTACGACAAGGAGACCCCATGTCTCCTTACATGGA GAGAAGCTGTCATAGTTTGAAAACTTATACAAAGTGGAGCAGGGGATTTGAAAACTTGTACATATTGCTAGGGGTTGTCC AGGTCTTTCACATCTTCTTTTTGCAGGTGATGTCCTTCTCTTTGGTCGTGCTTCTAATATCAAATGTCTCCAAGGGTTTT TGACTTTTTGTACAACATCGGCTCCCAACAGACTGTCCTCGTTTTAAATGTAATTTGGCTTCCTCTCAAAGTTGCAGTCG TTGTTCAAGTATTATCGAGGATATAATCCTTTGTCTTAGAGACCGCCTTCACTCTATGGAGGTGTGGCTGAGGTCCAGCA GACTGGTTCGTCAAACACTTTCTGTTTGGATTTGTTTTTTTTTTTCATCTGCTCATTCCACAACTTTGTTTGGTGGATTT GGAGGTTGAGGAATAATGTTGTATTAGATCTGTCAACTTGGACACGAGTTTTTTCTTCCTTTCCTAGTATTACAAACTCA ATTCGAGACATTTGTATGAGAATATTTTTCTAAGAGCAGGTATTCGCTCTTCTTGGAGCCCTGTGGATGAAATTGAATGT AGGTACTAGATGGAAGCTTTTTCTATGGATTGACAAGTATGGCTCACGAGGGGAGTTATTCGAGACTTCTCTGTAGCTTG GATAAAGGGGTTTGCCACTAAGGAAGGCATGGGAGATATTTTTCTAGCTGAAACTGTAGCAGTCTTGAGGGGTCCAAATC TTTGTTGAAAGCTGGGATTTAGAAAGGTGGAATGTGAATCTGATAATATTCAGGTTATATCTTTTCTCCAACAAAGGAAG CTTAACAAAGTTCATGCTCATGTGGCTTACTTCTCTGAAATTTTTTATCTCCTGCAATGTAACTCCACTGGGAGATAGTT TTGCCACATTCCAAGAGTGTGCAATATGGTTGCAGATAAATTAGCAAAACAAGTTAGCAAGGGAGGCCTTCAACTTTGAG TAACTAACTTACATATAATTCTAGTTGTTTAGAGAGTCACTCAATCATCCTTTTTCACTTATTCAAACATGCTTAAATCT ACAAAAGACGTCACTAAATTTGCC
CDS sequence (LotjaGi2g1v0294500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAAAGAGTTCTCACCTTTCTTCCCCATAGACAATTCTCATCAATACCTGAAATTCCAAGCCTTTACTCCTTCCT TCAACCTTCTGTGTTTGCTCTCAACAGAAACAGGACACAACCCATTTGTGAAGAGCCCCAAAAGCTTCCAACTTCACCCC CAAAGTCCCTTTCCCTCACCCCTGACCAAGTCTCCACACTCCAAACCACTCTTCACAAGTCCCTCATCACCAGTGACACT GATGAAGCTTGGAAGTCCTTCAAGTCTCTTACCTCTCATCAAGCCTTCCCACCTAAACCCCTCACCAATTCTCTCATTAC TCATCTTTCATCCCTTGGTGACATTCACAACCTCAAGAGGGCTTTTGCTTCTGCTGTTTTTCTCATGGAGAGGAATCCAA TGGTGCTGGAGTCTGAAACAATACATGCCATGCTTGATTCCATGAAGGGTGCCAACACTGCTGCCCCTGCTTTTGCTCTT GTCAGGTGTATGTTCAAGAACAGGTATTTTGTGCCTTTTGCCATGTGGGGTAATGTGCTTGTTGAGATTATTAGGAAAAG TGGTAACCTTGCTGCTTTCTTGCCTGTTTTTGAAGAGAGCTGTAGGGTTGCTTTGGATGAGAAGTTGGAGTTCATGAAAC CTGATGTTGCTGCTTGTAATGCAGCACTGGAAGGTTGCTGTTGTGAGCTTGAATCAGTGACTGATGCTGAGAGGGTTGTT GGAACAATGTCTAATCTTGGTGTTAGGCCGGATGAATTGACTTTTGGATTTCTTGGTTATTTATATGCAGTTAAGGGGTT ACAGGAAAAGATAAATGAGTTAGAAGTTTTGATGGGTGAGTTTGGTTGCTCAAACAAAAAGGTTTTTTATTCTAATTTGA TTAGTGGGTATGTTAAGTCTGGCAATTTAGCTTCTATGGAGTCAACGATTCTCAGGAGTCTGAGTGATGAAGACAGGAAA GATTGGAATTTTGGAGGAGAAACGTTCTGTGCAGTAGTTAAGGAATATCTTCGGAAGGGAAATATCAAGGGTTTAGCTAA TCTGATCAACGAAGCTCAGAAGTTAGAACCTTCTAACATTAAAGCTGATAACTCTATAGGTTATGGTATTGTTAATGCTT GTGTTAGTATGGGATTATCAGACAAAGCTCACAGCATTCTTGATGAAATGAATGCTCTGGGAGGCTCAGTAGGTCTTGGG GTCTATATACCTATCTTGAAGGCTTACTGCAAAGAAAATCGAACTGCTGAGGCTACTATATTGGTGATGGAGATTAGTAG TTCAGGTCTTCAGTTGGATGTGGAAACCTATGATGCTCTCATAGAAACATCCATGTCCAGCCAAGATTTTCAGTCAGCGT TTTCCCTGTTTAGGGACATGAGGGAGGCAAGGGTTCCTGACTTGAAAGGGAGTTACTTGACTATAATGACGGGTTTGATG GAGAATCATCGACCTGAGTTGATGGCAGCTTTCTTAGATGAGGTGGTTGGGGATCCTCGTATTGAAGTCGGTACTCATGA TTGGAATTCTATCATTCATGCTTTCTGTAAAGCCGGGAGACTAGAAGATGCTAGAAGGACTTTTAGAAGGATGAATTTCC TGCAATTTGAGCCAAATGATCAGACATACTTGTCCCTGATTAATGGTTATGTCTCGGCAGAGAAACATTTTAATGTGCTG ATGTTGTGGAATGATGTTAAGCGAAAGCTATCGTCAGATGGGCACAAAGGGATCAAATTTGACCACAATCTAGTTGATGC CTTCCTGTATGCTATGGTCAAGGGAGGTTTCTTTGATGCTGCTATGCAAGTTGTGGAGAAATCTCATGAGATGAAAATAT TTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACCCATAAAAAGCTCAAAGTGGCAAAGTTGAGAAAAAGAAAT ACTAAAAAAATGGAAGCAGTTATAGCTTTCAAGAATTGGGCTGGCTTAAATGCATGA
Protein sequence (LotjaGi2g1v0294500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKRVLTFLPHRQFSSIPEIPSLYSFLQPSVFALNRNRTQPICEEPQKLPTSPPKSLSLTPDQVSTLQTTLHKSLITSDT DEAWKSFKSLTSHQAFPPKPLTNSLITHLSSLGDIHNLKRAFASAVFLMERNPMVLESETIHAMLDSMKGANTAAPAFAL VRCMFKNRYFVPFAMWGNVLVEIIRKSGNLAAFLPVFEESCRVALDEKLEFMKPDVAACNAALEGCCCELESVTDAERVV GTMSNLGVRPDELTFGFLGYLYAVKGLQEKINELEVLMGEFGCSNKKVFYSNLISGYVKSGNLASMESTILRSLSDEDRK DWNFGGETFCAVVKEYLRKGNIKGLANLINEAQKLEPSNIKADNSIGYGIVNACVSMGLSDKAHSILDEMNALGGSVGLG VYIPILKAYCKENRTAEATILVMEISSSGLQLDVETYDALIETSMSSQDFQSAFSLFRDMREARVPDLKGSYLTIMTGLM ENHRPELMAAFLDEVVGDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMNFLQFEPNDQTYLSLINGYVSAEKHFNVL MLWNDVKRKLSSDGHKGIKFDHNLVDAFLYAMVKGGFFDAAMQVVEKSHEMKIFVDKWRYKQAFMETHKKLKVAKLRKRN TKKMEAVIAFKNWAGLNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 658 | 655 | 0.0 | – | |
| PANTHER | 4 | 658 | 655 | 0.0 | – | |
| Gene3D | 174 | 320 | 147 | 2.8E-10 | ||
| ProSiteProfiles | 215 | 250 | 36 | 8.912 | ||
| ProSiteProfiles | 286 | 321 | 36 | 6.029 | ||
| Pfam | 288 | 306 | 19 | 0.58 | ||
| Gene3D | 327 | 465 | 139 | 9.2E-17 | ||
| Pfam | 353 | 462 | 110 | 1.8E-6 | ||
| ProSiteProfiles | 363 | 397 | 35 | 6.281 | ||
| ProSiteProfiles | 398 | 432 | 35 | 7.52 | ||
| ProSiteProfiles | 433 | 467 | 35 | 8.791 | ||
| Gene3D | 468 | 632 | 165 | 2.6E-16 | ||
| ProSiteProfiles | 504 | 538 | 35 | 11.477 | ||
| Pfam | 508 | 551 | 44 | 3.3E-11 | ||
| TIGRFAM | 508 | 539 | 32 | 5.0E-7 | ||
| ProSiteProfiles | 539 | 569 | 31 | 6.456 | ||
| ProSiteProfiles | 581 | 615 | 35 | 5.722 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0294500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…