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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0297900 |
| Transcript ID | LotjaGi2g1v0297900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P29024|CHIA_PHAAN Acidic endochitinase; TrEMBL-Plants: tr|G7JXV4|G7JXV4_MEDTR Chitinase; Found in the gene: LotjaGi2g1v0297900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77251470..77252484) extracted from Lotus japonicus Gifu genome v1.2.
GATATACAGATTTTGCATGCAATTGGGAATGGCAAAGATGGCTGCTTCAATTTCATTCTTCTCCTTGATCCTATTGGCAC TAGCACATAGTTCTAATGCTGGTGGAGGCATTGCAGTCTACTGGGGGCAAAATGGCAATGAAGGCAGCCTTGCTGAAGCA TGTGCCACAGGGAACTACAATTTTGTCATCTTAGCCTTCCTTCCAACATTTGGCAATGGCCAGACCCCAATGGTAAACTT CGCCGGCCATTGCGATCCTTACAGCAACGCGTGCACAGGGCTAACCTCTGATATCAAGTCCTGCCAGGCCAAAGGCGTTA AGGTCTTGCTGTCTATTGGAGGAGGGGCTGGTAGCTACTCGCTCGCTTCCTCTAAGGATGCGAGCCAAGTAGCTACTTAC CTCTGGAACAACTTCTTAGGAGGAAGCTCTTCCTCCCGCCCTCTCGGGCCAGCCGTTCTTGATGGCATTGATTTTGACAT CGAAGGAGGCACGAACCTATACTGGGGCGATCTTGCTAGGTCTCTGAAGGGATACAACAAAAATCTGTACCTGACAGCAG CTCCTCAGTGCCCATTTCCTGATGCTTGGATTGGAAATGGGCTCAAGACCGGTTTATTCGACTATGTTTGGGTCCAATTC TACAACAACCCTCCTTGCCAGTACAGTGAGAGTGATATTAGCAATCTTGAAAATGCTTGGAAGCAGTGGACATTGGATAT TCCAGACAAAAAGGTTTTCTTGGGATTGCCAGCTTCCCCTGAAGCTGCAGGGAGTGGATTCATTCCAGTTACTGATCTTA CTTCCAAAGTGCTTCCAGCAATTCAGGGATCTTCTAAATATGGTGGTGTTATGCTGTGGTCTAGGTACTATGATATTCAG AGTGGATACAGTTCCTCCATCAAGAACCATGTCTAGAATCTAAGTTTATATGGGTGTGTTTTGGTGTATGTTATATGTAA TGCTTGTCTTTGTACTGGTGTGTGATGTGAAGAATGTGATCAATATATATGAAGT
CDS sequence (LotjaGi2g1v0297900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATTGGGAATGGCAAAGATGGCTGCTTCAATTTCATTCTTCTCCTTGATCCTATTGGCACTAGCACATAGTTCTAA TGCTGGTGGAGGCATTGCAGTCTACTGGGGGCAAAATGGCAATGAAGGCAGCCTTGCTGAAGCATGTGCCACAGGGAACT ACAATTTTGTCATCTTAGCCTTCCTTCCAACATTTGGCAATGGCCAGACCCCAATGGTAAACTTCGCCGGCCATTGCGAT CCTTACAGCAACGCGTGCACAGGGCTAACCTCTGATATCAAGTCCTGCCAGGCCAAAGGCGTTAAGGTCTTGCTGTCTAT TGGAGGAGGGGCTGGTAGCTACTCGCTCGCTTCCTCTAAGGATGCGAGCCAAGTAGCTACTTACCTCTGGAACAACTTCT TAGGAGGAAGCTCTTCCTCCCGCCCTCTCGGGCCAGCCGTTCTTGATGGCATTGATTTTGACATCGAAGGAGGCACGAAC CTATACTGGGGCGATCTTGCTAGGTCTCTGAAGGGATACAACAAAAATCTGTACCTGACAGCAGCTCCTCAGTGCCCATT TCCTGATGCTTGGATTGGAAATGGGCTCAAGACCGGTTTATTCGACTATGTTTGGGTCCAATTCTACAACAACCCTCCTT GCCAGTACAGTGAGAGTGATATTAGCAATCTTGAAAATGCTTGGAAGCAGTGGACATTGGATATTCCAGACAAAAAGGTT TTCTTGGGATTGCCAGCTTCCCCTGAAGCTGCAGGGAGTGGATTCATTCCAGTTACTGATCTTACTTCCAAAGTGCTTCC AGCAATTCAGGGATCTTCTAAATATGGTGGTGTTATGCTGTGGTCTAGGTACTATGATATTCAGAGTGGATACAGTTCCT CCATCAAGAACCATGTCTAG
Protein sequence (LotjaGi2g1v0297900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLGMAKMAASISFFSLILLALAHSSNAGGGIAVYWGQNGNEGSLAEACATGNYNFVILAFLPTFGNGQTPMVNFAGHCD PYSNACTGLTSDIKSCQAKGVKVLLSIGGGAGSYSLASSKDASQVATYLWNNFLGGSSSSRPLGPAVLDGIDFDIEGGTN LYWGDLARSLKGYNKNLYLTAAPQCPFPDAWIGNGLKTGLFDYVWVQFYNNPPCQYSESDISNLENAWKQWTLDIPDKKV FLGLPASPEAAGSGFIPVTDLTSKVLPAIQGSSKYGGVMLWSRYYDIQSGYSSSIKNHV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| PANTHER | 10 | 299 | 290 | 2.3E-169 | – | |
| PANTHER | 10 | 299 | 290 | 2.3E-169 | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| SUPERFAMILY | 29 | 297 | 269 | 2.97E-95 | ||
| Phobius | 29 | 299 | 271 | - | – | |
| Gene3D | 30 | 299 | 270 | 5.1E-99 | – | |
| CDD | 30 | 297 | 268 | 1.73502E-139 | – | |
| Pfam | 32 | 286 | 255 | 1.6E-28 | ||
| ProSitePatterns | 148 | 156 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0297900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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