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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0302000 |
| Transcript ID | LotjaGi2g1v0302000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin; TAIR: AT1G69530.4 expansin A1; Swiss-Prot: sp|Q9C554|EXPA1_ARATH Expansin-A1; TrEMBL-Plants: tr|Q8L5G4|Q8L5G4_CICAR Alpha-expansin 4; Found in the gene: LotjaGi2g1v0302000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77601090..77602149) extracted from Lotus japonicus Gifu genome v1.2.
TCAAACCAAATTCCATTTCTCATGGCTCTCATTGGCTTTCTCCTGCTCACAATGTTCACCTCTGCTTATGCCTATGGTGG AGGTTGGACTGATGCACATGCTACTTTCTATGGTGGGGGTGATGCCTCAGGAACAATGGGTATGCCTAAAAACTTCCCAT ATATGTTACAACTTTTTTAAGGTTAAAATGTAGAGAAAACTCAGTTGACTAATTGTTTTTTTTTTTCCTAATGAAATTTG AACAGGTGGGGCTTGTGGATATGGGAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTCTGAGCACTGCTATGT TCAACAATGGTTTGAGCTGTGGCTCTTGCTATGAAGTTAGGTGTGTGAATGACCACAGGTGGTGCCTTCCTGGCTCCATT GTGGTCACTGCCACCAACTTCTGTCCACCAAACAATGCTCTGCCCAACAATGCAGGAGGGTGGTGCAACCCTCCCCTCCA CCACTTTGACCTTGCTCAGCCTGTTTTCCTACGCATTGCCCAATACAAAGCTGGAATTGTGCCTGTGTCATACAGAAGGT AGCTTTTATTTCTTCCTTTATATACCGCCGCAACTAAATTAATTTATAAAAAACTTGTCAATGGTGTTTTTATTTAGTAT ATATGTTCCTTATGGTTAGAATTAATTTGCAAATAAATCTTTTAATTTGTGAGCTATATCTTTCTTAGTATGCAAAATGC CTAAATTAAATGTGTGTTTATTTTTGTGTGTAGGGTTGCCTGCAGGAGAAGGGGTGGGATCAGGTTCACAATCAATGGTC ATTCCTACTTCAACCTGGTTCTGATTACTAATGTGGGTGGTGCTGGGGATGTTCATAGTGCGGCTATCAAAGGGTCAAGA ACTGGGTGGAGTCCAATGTCAAGGAACTGGGGGCAGAACTGGCAGAGCAACAGCTATCTGAATGGACAGAGCTTGTCTTT CAAGGTCACCACTAGTAGTGGACAGACTGTGGTGTCCTACAATGTTGCTCCAGCTGGGTGGTCCTTTGGCCAAACCTACA CTGGTGCTCAATTCCGCTAG
CDS sequence (LotjaGi2g1v0302000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCATTGGCTTTCTCCTGCTCACAATGTTCACCTCTGCTTATGCCTATGGTGGAGGTTGGACTGATGCACATGC TACTTTCTATGGTGGGGGTGATGCCTCAGGAACAATGGGTGGGGCTTGTGGATATGGGAACCTCTACAGCCAAGGGTATG GAACAAACACTGCTGCTCTGAGCACTGCTATGTTCAACAATGGTTTGAGCTGTGGCTCTTGCTATGAAGTTAGGTGTGTG AATGACCACAGGTGGTGCCTTCCTGGCTCCATTGTGGTCACTGCCACCAACTTCTGTCCACCAAACAATGCTCTGCCCAA CAATGCAGGAGGGTGGTGCAACCCTCCCCTCCACCACTTTGACCTTGCTCAGCCTGTTTTCCTACGCATTGCCCAATACA AAGCTGGAATTGTGCCTGTGTCATACAGAAGGGTTGCCTGCAGGAGAAGGGGTGGGATCAGGTTCACAATCAATGGTCAT TCCTACTTCAACCTGGTTCTGATTACTAATGTGGGTGGTGCTGGGGATGTTCATAGTGCGGCTATCAAAGGGTCAAGAAC TGGGTGGAGTCCAATGTCAAGGAACTGGGGGCAGAACTGGCAGACTGGGTGGTCCTTTGGCCAAACCTACACTGGTGCTC AATTCCGCTAG
Protein sequence (LotjaGi2g1v0302000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALIGFLLLTMFTSAYAYGGGWTDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTAMFNNGLSCGSCYEVRCV NDHRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVSYRRVACRRRGGIRFTINGH SYFNLVLITNVGGAGDVHSAAIKGSRTGWSPMSRNWGQNWQTGWSFGQTYTGAQFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| PANTHER | 6 | 202 | 197 | 8.5E-136 | – | |
| PANTHER | 6 | 202 | 197 | 8.5E-136 | – | |
| SUPERFAMILY | 8 | 170 | 163 | 5.58E-56 | ||
| Gene3D | 9 | 148 | 140 | 9.0E-45 | ||
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 216 | 199 | - | – | |
| PRINTS | 21 | 36 | 16 | 7.1E-44 | ||
| PRINTS | 39 | 57 | 19 | 7.1E-44 | ||
| ProSiteProfiles | 40 | 152 | 113 | 30.437 | ||
| PRINTS | 52 | 66 | 15 | 8.1E-63 | ||
| SMART | 57 | 142 | 86 | 4.1E-54 | ||
| Pfam | 57 | 142 | 86 | 5.6E-22 | ||
| PRINTS | 61 | 79 | 19 | 7.1E-44 | ||
| PRINTS | 79 | 90 | 12 | 8.1E-63 | ||
| PRINTS | 91 | 101 | 11 | 8.1E-63 | ||
| PRINTS | 110 | 127 | 18 | 8.1E-63 | ||
| PRINTS | 127 | 140 | 14 | 8.1E-63 | ||
| PRINTS | 135 | 151 | 17 | 7.1E-44 | ||
| SUPERFAMILY | 149 | 211 | 63 | 1.57E-19 | ||
| PRINTS | 151 | 163 | 13 | 8.1E-63 | ||
| Gene3D | 152 | 205 | 54 | 1.3E-9 | ||
| Pfam | 153 | 203 | 51 | 1.2E-17 | ||
| ProSiteProfiles | 162 | 216 | 55 | 12.5 | ||
| PRINTS | 163 | 184 | 22 | 8.1E-63 | ||
| PRINTS | 189 | 203 | 15 | 7.1E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi2g1v0302000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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