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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0303100 |
| Transcript ID | LotjaGi2g1v0303100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G02980.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980, chloroplastic; TrEMBL-Plants: tr|I1J5R2|I1J5R2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0303100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77699781..77705450) extracted from Lotus japonicus Gifu genome v1.2.
CTCAATCGTTTCATCCGAACCGGCCGGTCCAGTGCCGCAACTCTATCCATTTTCTCTTTCTTCTCTTTCGTTCCTCTGTT TCAGGCAAAGAATCTTTGTCAGTCACAACAATGTCAACACCCATTCTCCAATTGACTTCACTTCCTCCCACAAAACACAA CAACACAGAACCACCTCCAAGAATCGAAGCTGCTTCTACACTTGCACTAGAATCTTTACCTCACCTCATCTCCCTCATTC CCAAATGCACCTCTCTTAGGGAGCTCAAGCAAATTCAAGCTCACACCATCAAGACCCACCTCCAGAATGACACCAATGTC CTCACCAAGCTCATAAATTTCTGCACTTCCAACCCCACCACAGCTTCTATGGAACATGCCCACCATCTGTTCGACAAAAT TCCTCAACCAGATATTTTTCTTTTTAACTCATTGGCACGTGGGTATGCCCGTTCTGATGACCCTTTTAAAGCAATCATTC TGTTTTCTCGCGTGTTGTGCTCGGGCCTCCTTCCGGATGATTACACATTCTCCTCCCTACTCAAGGCGTGTTCGAGGGTT AAGGCCTTGCAGGAAGGTAAACAGCTGCATTGCCTTGCTTTCAAACTGGGGGTAAGTGATAACATGTATGTGTCCCCAAC ACTCATAAACATGTATACTGCCTGTGATGACATTGATGCTGCTAAAAGGGTCTTTGGTAAGATCGATGAACCGTGTGTTG TTGCATATAATGCAATCATTACTAGCTGTGCTAGGAAGAGTCAGCCCACTGAGGCATTGGCTTTGTTTAGAGAATTGCAG GAGGCTGGTCTTAAGCCGACTTATGTCACCATGCTTGTCGTGCTTTCGTCCTGTGCTTTGCTAGGAGCGTTGGACTTGGG GAGGTGGATCCATGAGTATGTTAAGAAGTATGGGTTTGATCAATACGTGAAGGTAAATACTGCACTTATAGATATGTATT CTAAATGCGGGAGTTTGGATGATGCTGTTAAAGTGTTCAGGAGCATGGATAGGAGAGACACACAGGCGTGGTCGGCGATG ATTGTTGCTTATGCAACACATGGACATGGTTCCCAAGCTATGTCATTGTTGGAAGAAATGAAGAAGGAAAAAGTGCAGCC TGATGAGATAACTTTTTTAGGTATATTATATGCATGCAGTCACAATGGATTGGTCGAGGAAGGTTATGAGTATTTTCGTA GTATGACTCATGAGTACGGGATTGTTCCTAGTATCAAGCATTATGGGTGTATGGTGGATTTGCTTGGTCGAGCTGGACGC TTGGATGAAGCATATAAATTCATAGATGAATTACCAATCAAGCCCACACCAATTCTGTGGAGGACATTGCTATCTGCTTG TAGCAGTCATGGCAATGTTGAAATGGGGAAACAAGTAATGCAGAGAATCTCTGAACTGGACGATTCTCATGGTGGTGATT ATGTTCTTTTGTCAAACTTGTGTGCAAGATCTGGAAGATGGGATGATGTGAGTCACTTAAGGAGAATGATGATAGACAAA GGAGCAGGGAAAATTCCTGGGTGTAGTTCTATAGAGGTTAACAATGTCGTTCATGAATTCTTCTCTGGGGATGGAGTTCA TTTCACTTCTTCTGTATTACACCATGCGCTTGATGAGTTGGTAAAGGAATTGAAGCTGGCTGGGTATGTACCTGACACAT CTCTAGTCTTTCATGCAGGCATGGAAGATGAAGAGAAAGAAATGATTCTTAGGTATCACAGTGAGAAATTGGCTATTACT TTTGGGTTGCTGAATACTCCCCCTGGAACAACAATTCGTGTGGTCAAGAACCTTAGAGTTTGTGTTGATTGCCATAATGC TGCTAAATTTATATCATTGATCTTTGGTAGGCAAATTATTCTCAGAGATGTCCAGCGATTTCATCATTTCAAAGATGGGA AATGCTCTTGTGGGGAATACTGGTAGTGGAGTTTTTTAATCAATATTCAACTTTCTCACAGATTCTAAAAACTTGATCCC TTTATTGCCACGGAATTAAGTTATATTTGTGCTTGGAAGGAATAGCCTCTGTATGCAGCCAGGAAGAAGAAAGGTTTGTT CATGTAAATTAGGGAATGGAATCAATGGATCATCATCATGATTAGCAAATTCAAATAATTATAACAGAGAGTTTGCATAC ATGTTGGTATCAATTATTGCCTTGGAAGGTTCAGGTTCATTCTTAGGTAATATAACCTACCCGTATTGCTGGTATTGTTG ACATTTAAAGTTCATTTTTGTAAATAAAATTTGTATATTTTACATTGTGACTGTAGATACTAGATATATGCAGATAGCTC TGGAATTTAAGCAGTAGGGAATACAAGATATTGTGACTGTAGTAGATACTAGATGTTGTGTCCTCTGCATAGACTTCTTG TTTACTTATATTATCTTACAGATTAACCAATTATGGATTGCTCTTAGGGAAAAATCTACTGTGCTGCACACATTATTTTG TGGAAAAATTAGCTCCTTACACACTATTCAGTACTATTTTTTTATGGTTTTGATTCCTCATTATTTTAAATTTAGGTGTT TTAGTCCCTCAATTTAAGAGAGTTTTGTTAAGTGATGAAGTGGTAAATAGTGAGTCACCTCACCTTAGACACATTAAAAT AATTATCTCATGTGGCCACCACTCTCACCCACTCAGCTTTCCATGCACACCTTTTTGCCTTCTCCTTTTCTCCCGATCGA TCTCTTTCTGCTAGTTTTTTTCTTTCCCCTTTTCCACCACTCACTCTCTACTTTCTTCTCATTTGAGGTTATCATTCATG AGATGAGGACGGTGTTGAAGAGGAAGTGGAGGTGTGTATTTGAGGCAATCATTCATGTTGGAGGTGTGTATTTGAGGCAA TTAAAGCTTAGAAATGAACATAAAAAGGCAGCAAAGCTGCAATGAAAAATGTTAATAACATACTTCTTTATTATTTTTAA CACATCTACTACACTTTAAAAGAGACTCAAGAAATCACTATTCCTAAAAGAACTTTCAATCTTGGCCGTCCATTTGATTC TCTCTCCATGCGATCTATTTAATCATGGCCCTTCCTTTGTGAGACTTTTTTCATCTTTATTCCACTCAAGCTGCTCTAAT TTTCTGATATACAGAACGTCGTGATAGAGTGTGTTCACCATGGTTTGATTTCGTGGGTATACGTCACCCCTGCAGCCCCT GTCCCTGTAGCGTGTTTCTGGATGAGGCAAAGAGTGTGTCCATAGCCATCGTCATTCTTGCAGACAGCCTGTGTCATGCA GTAGTTGTTTGGGTTAGGTGTAGTTGTAGAAGGAAGGATCATTGTAAGTTTGGTTGAAGTAGGAAGTCGAAATTTTAGGT TTTCCTGTTGAACACGATTTAGGGAAAATTTCGTCACCCTGACCTAAGTTTCTTCAAGTCATTGTCAGATAGGTTGTAAT TGAAGGAGGAGAATAGAACTGTTGATGAAGGATTTTGATATGTGCAGAATGTGCTGTCTGAAGGAGGATGGTAGATGTGT ATCAGAAGCCATGTCAGGTCAGTAACAGAGGTTTGGTATGCATAGCTGTGAAGCAGGTTTACTGCTGAAACTCAATTCAA TTTAATGTAATTTAATTTATTTTTTGAAATGCTCAAATGTTTCTCACTTGCACTTGTCTATAAATACTGCTCTCTTCTGT TCTTCTTGGTGTTCTTGCTCAATGCAATTTTCTTTTGCTTATCTCCCCTTTCGTATAGAGAATTGTTGATTGTTGTTACT TATGGCTTTTACTGCTGGTCTTTTCCATCCCCTTTGTAGCTTATGCCCAAGCAAAGATGTTTCCTGTTGTTGATCCTGGC AAACCATATGCTATTAATCTTGTCTTGATCGTTCATAGGTTATTTCTTTTCTTGAAGAAGTGCTATGTGCTTGCTTCCAG GTAGGTTTTTTCTATATGTCTTCTTTGGTTATATTGCTTTCATTGGTTTTAAAGGGTGATCTTGAGGTTTTCTGTCCAGT TTTGGAAGTTATGGTCTCAAAAATTATTGTATAGTAAAACCTGATATTTGAAATTGAAAAAAATTGCAAAATAGGTTATT ATGTTTGTTTTCATAAGTTGATTATAGTATTTTGCTTCCTATTCAGGTTATTGGTTAGTGAATTTGCTTTATTGCAGTAA AAGGATAAAGCATAGCATCTTATCATAATTTTAAGGCTGCCACTGCACAAAAAATTGCAATTTCTTTGAAAACACCCATC AAATATGTTTTCATGACATACCTGTATACTAATTGGAATCACGTGCTTAGGCAAATCTGCAGTTGAAGCAATATAACTAT ATATTTTCATTAGTTTGTCACCCCTGGATCTGGTCTGTCCTTTGGATGTGAGTATTGCCAAGCCTTTGTTGATATAGTAT AATGATTTATTAATTTATATTGGATTAGTTTGATTACTTGATTCCTTCCTCAATTATTTTTTCCTTGATGCATTCTGTTG TTGATGTTGATTACCTGCTGGAGGTTGAGGAAAAAATTATTGGAAAAGAATTGTTGTTCAAAGTTTCTAAGATTCCTGGT ATTACAATTAAGGGGTTTCCTTGCTATGAGGTTCTTCGAATTTGTGCTGATACTGAGATCATTTCACTTTTCTTTTCTGA GGCAGCGAGTACTACATCGATTATGGTAATTTTTGTATGTATTTTGTGATATAATCTGGATACAAGTACACAACTATTAA CCTTATTAGTTTTTTTTTTGTTACAGGACATAGATGTAGTGTTTATGTTTTTATTTTGTTAGGTATCATGTATGAGTTAG AACTGGTATATATATATTATGCATCCTTAAACAGTCAATTTTTATAACATAGGTGACATCTTAGGTAGCATGTTCTAACT TTAGAAGAACTCTTAGGTGACAGATGGTGAGGGAGAACATGCTGCCCATGTTGCTGGATATGGAAAAAGTATCAATGAAG GTGCTCTTGCAAATTTGGTGAAAAGAAAATTGAAAGTGTCTGGTAGTGAGTTTTATGAAGATGCAGATAGCAAGCTAAGA AAGGTTGAAACAAAGGTGGTGGAGAAGGTAGAAATCACTGGTCATGACTTTGCCAATGCTGATGATGGATTGTTAGGTGA AATTAATCGCTTGAAGGAAATTAAGATAGCTGATGGGGGGTCTGACTGTGAGGGTCGTTTTGTACCAGTTGCTGAGTTCA AGGTCCAGGAAAAACATGAAATTTCAACCTGCTGGCTTCTAGAGGTTCATTACTGGATGGTGGATATTGCTTACTCTGAA TGAAGAATTCAATGTACCTGGGTGTTATGTGTTAGCATTATGTTGTCCCTTTTTTGTAAATCTATGGGGCCATTGAACTA AGTATTGTATTTAATTAAGTGTGATGCTACATGTCCTATGTTAGAACTGCATGTAGTTTGGTGAACGTGATATGTATTTG CTATTTTGTAACCTCTTGAGAACTGTGATGTGCAGAATTGTAGTTTAAGTAACCCTATTATCAATATAAGTTATTGTGTT TGTATTCATTGTGAATGCTTCATTTGTCCTTTTCCAACAATATGCTTATAAGAATGAATAAAGTATATTTAAGCCTTATT TTGATGGTCATATGAATAGACTTGTATTATTTTCTTCCTTTTATTCAATTATTGAATCAACAAATTCAGA
CDS sequence (LotjaGi2g1v0303100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACACCCATTCTCCAATTGACTTCACTTCCTCCCACAAAACACAACAACACAGAACCACCTCCAAGAATCGAAGC TGCTTCTACACTTGCACTAGAATCTTTACCTCACCTCATCTCCCTCATTCCCAAATGCACCTCTCTTAGGGAGCTCAAGC AAATTCAAGCTCACACCATCAAGACCCACCTCCAGAATGACACCAATGTCCTCACCAAGCTCATAAATTTCTGCACTTCC AACCCCACCACAGCTTCTATGGAACATGCCCACCATCTGTTCGACAAAATTCCTCAACCAGATATTTTTCTTTTTAACTC ATTGGCACGTGGGTATGCCCGTTCTGATGACCCTTTTAAAGCAATCATTCTGTTTTCTCGCGTGTTGTGCTCGGGCCTCC TTCCGGATGATTACACATTCTCCTCCCTACTCAAGGCGTGTTCGAGGGTTAAGGCCTTGCAGGAAGGTAAACAGCTGCAT TGCCTTGCTTTCAAACTGGGGGTAAGTGATAACATGTATGTGTCCCCAACACTCATAAACATGTATACTGCCTGTGATGA CATTGATGCTGCTAAAAGGGTCTTTGGTAAGATCGATGAACCGTGTGTTGTTGCATATAATGCAATCATTACTAGCTGTG CTAGGAAGAGTCAGCCCACTGAGGCATTGGCTTTGTTTAGAGAATTGCAGGAGGCTGGTCTTAAGCCGACTTATGTCACC ATGCTTGTCGTGCTTTCGTCCTGTGCTTTGCTAGGAGCGTTGGACTTGGGGAGGTGGATCCATGAGTATGTTAAGAAGTA TGGGTTTGATCAATACGTGAAGGTAAATACTGCACTTATAGATATGTATTCTAAATGCGGGAGTTTGGATGATGCTGTTA AAGTGTTCAGGAGCATGGATAGGAGAGACACACAGGCGTGGTCGGCGATGATTGTTGCTTATGCAACACATGGACATGGT TCCCAAGCTATGTCATTGTTGGAAGAAATGAAGAAGGAAAAAGTGCAGCCTGATGAGATAACTTTTTTAGGTATATTATA TGCATGCAGTCACAATGGATTGGTCGAGGAAGGTTATGAGTATTTTCGTAGTATGACTCATGAGTACGGGATTGTTCCTA GTATCAAGCATTATGGGTGTATGGTGGATTTGCTTGGTCGAGCTGGACGCTTGGATGAAGCATATAAATTCATAGATGAA TTACCAATCAAGCCCACACCAATTCTGTGGAGGACATTGCTATCTGCTTGTAGCAGTCATGGCAATGTTGAAATGGGGAA ACAAGTAATGCAGAGAATCTCTGAACTGGACGATTCTCATGGTGGTGATTATGTTCTTTTGTCAAACTTGTGTGCAAGAT CTGGAAGATGGGATGATGTGAGTCACTTAAGGAGAATGATGATAGACAAAGGAGCAGGGAAAATTCCTGGGTGTAGTTCT ATAGAGGTTAACAATGTCGTTCATGAATTCTTCTCTGGGGATGGAGTTCATTTCACTTCTTCTGTATTACACCATGCGCT TGATGAGTTGGTAAAGGAATTGAAGCTGGCTGGGTATGTACCTGACACATCTCTAGTCTTTCATGCAGGCATGGAAGATG AAGAGAAAGAAATGATTCTTAGGTATCACAGTGAGAAATTGGCTATTACTTTTGGGTTGCTGAATACTCCCCCTGGAACA ACAATTCGTGTGGTCAAGAACCTTAGAGTTTGTGTTGATTGCCATAATGCTGCTAAATTTATATCATTGATCTTTGGTAG GCAAATTATTCTCAGAGATGTCCAGCGATTTCATCATTTCAAAGATGGGAAATGCTCTTGTGGGGAATACTGGTAG
Protein sequence (LotjaGi2g1v0303100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTPILQLTSLPPTKHNNTEPPPRIEAASTLALESLPHLISLIPKCTSLRELKQIQAHTIKTHLQNDTNVLTKLINFCTS NPTTASMEHAHHLFDKIPQPDIFLFNSLARGYARSDDPFKAIILFSRVLCSGLLPDDYTFSSLLKACSRVKALQEGKQLH CLAFKLGVSDNMYVSPTLINMYTACDDIDAAKRVFGKIDEPCVVAYNAIITSCARKSQPTEALALFRELQEAGLKPTYVT MLVVLSSCALLGALDLGRWIHEYVKKYGFDQYVKVNTALIDMYSKCGSLDDAVKVFRSMDRRDTQAWSAMIVAYATHGHG SQAMSLLEEMKKEKVQPDEITFLGILYACSHNGLVEEGYEYFRSMTHEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDE LPIKPTPILWRTLLSACSSHGNVEMGKQVMQRISELDDSHGGDYVLLSNLCARSGRWDDVSHLRRMMIDKGAGKIPGCSS IEVNNVVHEFFSGDGVHFTSSVLHHALDELVKELKLAGYVPDTSLVFHAGMEDEEKEMILRYHSEKLAITFGLLNTPPGT TIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGEYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| Gene3D | 26 | 164 | 139 | 2.4E-15 | ||
| PANTHER | 39 | 160 | 122 | 5.3E-96 | – | |
| ProSiteProfiles | 101 | 135 | 35 | 9.504 | ||
| Pfam | 104 | 132 | 29 | 0.041 | ||
| ProSiteProfiles | 136 | 170 | 35 | 7.662 | ||
| PANTHER | 153 | 260 | 108 | 5.3E-96 | – | |
| Gene3D | 169 | 274 | 106 | 1.2E-16 | ||
| ProSiteProfiles | 171 | 201 | 31 | 5.503 | ||
| Pfam | 201 | 248 | 48 | 1.9E-9 | ||
| ProSiteProfiles | 202 | 236 | 35 | 11.466 | ||
| TIGRFAM | 204 | 237 | 34 | 7.1E-7 | ||
| ProSiteProfiles | 237 | 271 | 35 | 5.689 | ||
| PANTHER | 254 | 467 | 214 | 5.3E-96 | – | |
| SUPERFAMILY | 266 | 439 | 174 | 4.8E-6 | ||
| ProSiteProfiles | 272 | 302 | 31 | 8.046 | ||
| Pfam | 277 | 302 | 26 | 1.6E-4 | ||
| Gene3D | 277 | 494 | 218 | 2.4E-44 | ||
| TIGRFAM | 277 | 303 | 27 | 1.3E-4 | ||
| ProSiteProfiles | 303 | 337 | 35 | 11.126 | ||
| Pfam | 303 | 349 | 47 | 6.7E-10 | ||
| TIGRFAM | 306 | 339 | 34 | 3.1E-5 | ||
| ProSiteProfiles | 338 | 373 | 36 | 8.177 | ||
| TIGRFAM | 341 | 374 | 34 | 1.1E-4 | ||
| ProSiteProfiles | 374 | 408 | 35 | 7.848 | ||
| Pfam | 378 | 401 | 24 | 0.023 | ||
| Pfam | 409 | 434 | 26 | 0.22 | ||
| ProSiteProfiles | 440 | 474 | 35 | 6.665 | ||
| Pfam | 476 | 601 | 126 | 4.4E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0303100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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