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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0303500 |
| Transcript ID | LotjaGi2g1v0303500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT2G02960.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|A0A151TFN2|A0A151TFN2_CAJCA E3 ubiquitin-protein ligase Doa10; Found in the gene: LotjaGi2g1v0303500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77730357..77734206) extracted from Lotus japonicus Gifu genome v1.2.
CAAACGGCAAACTTTTTCTCTTTTCTATATTATTATTATTATTATTATCCATTTTCTAAGCAAAACCTAAATTTCCAAAT AAATAAAAATCATTATTTCTAAATAAATAAATAAATACAAGAAGAAACGAGAAGAAGAAAACGCGTTTCGCAACACACAC TGCGTTTGTTTATCTTCAATCGCGTTTCTCTCTTCTCTCTCTATCTTCTTCCCTATTTCCATTCTTCTCGGTAAGATTTC CTCTCATTTTCTCGGTAAAATCTCCAGATCCGTGTCTCTTTTCATTGATGTTTATATATTCCTTTTCGATTTCTGATTCT GATTTATGAATTTTTCGATTTTGATTTTTTTTAGGGTTTTTTGATTTGAGGTTTTTTCAATTTCCCAATGAGCGATCACC TGGTGCTATTCGTTGACCAACTCGTGCGCCCTGTCCCTGTTGACCCCGTCGCGCAGCCCGCCCAGCTCCCTTCTGAGCCC TCGCCGTCTCTCGATGCTGCCGCCGCGGCCGCGGGTCCTTCCGGGACCGCACCGCCGGCGGATCAAGATGTTGAGGATGC TGACGAGGATGAGCCGCTGATCCAGATGGCGGAATGCCGCATCTGCCAGGAGGAGGATCAGGTTTCCAACCTGGAGACGC CTTGCGCCTGCAGCGGCAGCCTTAAGGTATCATCAATGTCTCTCTGCCCTGGATTCTTTTTTAATAATTCTTTGAATTTC AGGTAATTGTTTTTGTGGGATTAGAAGAAAATTGATTTGTTTGTTAATTAGAATGATTTATGCGTTTTGCGTGTAAAACT TAGGATTTCAAATGATCGATCTCTGTGAAAAAAGGGATATGAAACGTTTTTTTGTGCTTGTTATTAATATTGATAATGTT AATTATTGAATTCGATTTATGCTTATGCATGGTTAGAAGGTTTTTTGTTACTTTTTTGTGTATATGCACCCTTATAGATG CTACCTGGATCAAAATGAGTTTATGAATCTTTTTGCTGGATATATTTTGCATTCTTAATTAACCGGTTCTCGAAGTAGAT TCAATATTTTTAAATTGGAAAATGAGAACGAATTATCGAACGGTTTCTGTGAGAAAACTGCGTTCTGCTCCCGTTATTGA GCTGGGTAATGCATTAATATCCATTGCCCAGCTTGAGAGGAGGATGAGAATGCAGAAGGGTGGGGGAACATTGTTGTGTG CGTGATATTTTGTTTCATTTCATTCATCTCTGTTTTGGTCTTCATGAGTAATAACTTGTGAACTTTGTTTTTGCACAGTA TGCTCACAGAAAATGTGTTCAGCATTGGTGCAATGAGAAAGGAGACATCACTTGTGAGATATGTCATCAGGTATGTGCTT TGTACTGCCATTTTTTATATTCCATTACATTTTTGTTCTCGTAAGGTTATGGTGAAGGAAAGTTATGCGAATGCTTATTT TTTGAAAGTGTCTAGCTTTATTGGACTGTGAATTGGGATCTCAGTATCCTGGATCCTGGGTTTAGTGGGGGGGGGGGGGT GAAACTAGTTGGGTAGGCTGTAGCTCTCTGTAAAGGTCACATACTCCCTCTCTTATCTGTATTATTGAACCTCAAACACA ATATTTTAATGTTAAGCTTGTAGTTATAGTGATAGAGTGAAGAACTGTATGCCTTCTTGATTAACTACTTTCAATAGAAA ATAGATACACCTGTAAGATGAATCTTGCCCTATGATATCTTGAATTCAGAAGGAAATGCTTATACCATCCAATAACCTTC ACTCTCCGATTTAATAGCTAAGAAAAACATCTTTGCTCTTAGTTTAGTTGTTTGCTTTAGATTACTCTATGGTTTTGCAC GGGGTTTTGAGTATGGAATATGGGATGCCTGCTCTGCCCAGGTACCAAACATGGGCATCTTGCATATACATCCCAATATA TTTTATAATTTTAGATTTCTAGCCTGAATGAGGATGCATTTGTTCAATATACCTCCTTGTTTTCTTGCATTTTGCCTGAG ATTGGGAAAAGTTTTGTGAGAAGTGAATGTATTTTATCTGAGTATATGTAAAATATACTCTGGAAAATTAACATTTTGTA TTCTTAAATTGTAAGATAGTGTACTTGTAGTCATTGTGCAAGTTGCTTGTCTACTTTTTATATTTGGGAATGAACCAAAT GCTCAATATCCTGTGCGTATGTAAATCCTTCCAATTATATTTATTATGTTCTAGTCTTTGATGCTTGCTAATTTTTTTTT TTTTTTTTTTTGCATTTAACTCGCAGCCCTATCAACCTGGGTATACCGCCCCGCCACCTCGCCCTAATCCTGATGAAACT ACCATTGATATAGGGTAAGCTAAAGTTTTATCTATTTTGAAATAGCATTTCAGTATGTTAATGTTGTTCAAGTGGTCTCT TTGTGAGTTACATGGAGGCTTAAATGGCCTTTGAAACTTGTCTCTTAATTAATCATAACCTTTCTTTCAGAGGAGGGTGG ACAATATCTGGCACGCCTTTGGACTTGCGTGATCCTAGACTTCTGGCAATTGCAGAGGCAGAACGCCAATTCTTGGATGC TGAATATGATGAGTATGCTGCTTCAAATGCCAGCGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTGTAAGTCAACAAC CTTGCATACCTTTTTACCAAATTTTGTAGAACTTGGTCATGTTTATTTGCATTATCCATTTTGCGTTAATGGCATCTAGT ACTACTTTCATATTCTGAATTTATTAGAAATCAATTACATGCTATGGACTCCGATGCTGCACCATTGCATTGGTTCAATA TATTGACCATGTTAGTATGCTAGCTAGTGCATATGATTTTAAGCTTAATACATTTTATTTGTTACAGTTGATGGCCCTTT TGCTCTTGCGGCATGCATTGTCTGTCACAGATGGTGATGCTTCTGATGATGATCCTTCTAACTTTTTCTCTGTAAGTGAT TTGAGTTTCTTTTATTTAAGTTGTTTGTGTGCCTGTTGTATGATTTCAAATGTGATGGAGCCAACCTAATTATCCCCCAA TCTTCTGCAGCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATCCTGC AACGTCGACGACAAAGACAGGTTAGTTTTCTAATTGTATTCTGGTTTTCTTTTGAAAAATCATGTTATGCAGTTCCATTA TAGGCTGCATTCGATGTCTGTTCATGTGTTTTTTGCTAGTGCATCTGGGAAACTGCCTACACATTCAGGATTTCCCCGAG TATGTTCTGTGAATTTCTGATGGTTTTGTATTATGAACAGGAAGCTGCAGCTTTAGCAGCCACCCAAGTTGCTTTTGTTC TACAATCTGGGCAGCGTAGAGGTCTACAATTTGCCATAGCGCCAGGACCACCCCCCACTGTACACCAGGAGCAAGTGTAG TTTGTATTTTTTATGTATGAGATCACATGGCGTCAGTAAGGCTTGTTGATGTTATGTACTATTAATCTTTGACTTTCCCA GCTTAATGTATGTACATACTGGGGGTGCTTAAACAATACATGAATTCATGATTATCCATTCAATTCATCCGTCTATGAAT GTAATCGAATCCATCTAGTTATTAGTAATAAAGAGATTTATATGGAAAATGATTATTATTGTTTTATGATGTCGTTCAAT TGCTAATGGATTTTTATGGTAGTAGAAAGAAAAGGAGAACGCCAAAGACCATGTTTGTTTAGTGCCATTAAAATGAGGGC AAAGATAGAGGTTAATACACATTTGATATCAATGAATTGTCTTATGTTAACTGAATATTAAATACAGTATATGCGAATTA GATGTCATCA
CDS sequence (LotjaGi2g1v0303500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGATCACCTGGTGCTATTCGTTGACCAACTCGTGCGCCCTGTCCCTGTTGACCCCGTCGCGCAGCCCGCCCAGCT CCCTTCTGAGCCCTCGCCGTCTCTCGATGCTGCCGCCGCGGCCGCGGGTCCTTCCGGGACCGCACCGCCGGCGGATCAAG ATGTTGAGGATGCTGACGAGGATGAGCCGCTGATCCAGATGGCGGAATGCCGCATCTGCCAGGAGGAGGATCAGGTTTCC AACCTGGAGACGCCTTGCGCCTGCAGCGGCAGCCTTAAGTATGCTCACAGAAAATGTGTTCAGCATTGGTGCAATGAGAA AGGAGACATCACTTGTGAGATATGTCATCAGCCCTATCAACCTGGGTATACCGCCCCGCCACCTCGCCCTAATCCTGATG AAACTACCATTGATATAGGAGGAGGGTGGACAATATCTGGCACGCCTTTGGACTTGCGTGATCCTAGACTTCTGGCAATT GCAGAGGCAGAACGCCAATTCTTGGATGCTGAATATGATGAGTATGCTGCTTCAAATGCCAGCGGAGCTGCATTTTGCCG CTCAGCTGCTCTAATTTTGATGGCCCTTTTGCTCTTGCGGCATGCATTGTCTGTCACAGATGGTGATGCTTCTGATGATG ATCCTTCTAACTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATC AGTATCCTGCAACGTCGACGACAAAGACAGGAAGCTGCAGCTTTAGCAGCCACCCAAGTTGCTTTTGTTCTACAATCTGG GCAGCGTAGAGGTCTACAATTTGCCATAGCGCCAGGACCACCCCCCACTGTACACCAGGAGCAAGTGTAG
Protein sequence (LotjaGi2g1v0303500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDHLVLFVDQLVRPVPVDPVAQPAQLPSEPSPSLDAAAAAAGPSGTAPPADQDVEDADEDEPLIQMAECRICQEEDQVS NLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPDETTIDIGGGWTISGTPLDLRDPRLLAI AEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAI SILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPPTVHQEQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 285 | 285 | 1.7E-153 | ||
| PANTHER | 1 | 285 | 285 | 1.7E-153 | – | |
| Phobius | 1 | 183 | 183 | - | – | |
| MobiDBLite | 20 | 58 | 39 | - | – | |
| Gene3D | 55 | 125 | 71 | 3.8E-19 | ||
| ProSiteProfiles | 62 | 122 | 61 | 22.718 | ||
| SUPERFAMILY | 68 | 120 | 53 | 1.01E-14 | – | |
| SMART | 69 | 116 | 48 | 5.3E-20 | ||
| CDD | 70 | 116 | 47 | 5.82372E-20 | – | |
| Pfam | 70 | 115 | 46 | 4.3E-13 | ||
| Pfam | 121 | 240 | 120 | 3.5E-46 | ||
| Coils | 158 | 178 | 21 | - | – | |
| Phobius | 184 | 203 | 20 | - | – | |
| TMHMM | 184 | 206 | 23 | - | – | |
| Phobius | 204 | 217 | 14 | - | – | |
| Phobius | 218 | 240 | 23 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 241 | 289 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0303500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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