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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0308100 |
| Transcript ID | LotjaGi2g1v0308100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT1G14420.1 Pectate lyase family protein; Swiss-Prot: sp|Q9M9S2|PLY3_ARATH Probable pectate lyase 3; TrEMBL-Plants: tr|I1JBP5|I1JBP5_SOYBN Pectate lyase; Found in the gene: LotjaGi2g1v0308100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78244023..78247373) extracted from Lotus japonicus Gifu genome v1.2.
CCCATATATATATATATTCATATCAAGTGCTCCTTTATACAATGCCACCTTGATTACCCCTGTCATTCCAGAAAGGTTCT TTCCATAATTTGGCTGAGGTTGTTTCACCTTGGCCATAATCAAAAGTTTAAAAGGAAAAAAAAAAACAATTGGAAAAGAA CCATCATGGCAGATTTGTACACCTCCCTTCTTGTGATCTGTTTGGTAGTCATCATACCTACCTTGTATGCCAATGTCAAA GAGGACCAGGTTTACTGGGATAGGCAGATGAAGGCGCTTGATACTACATATTGGAAGGACAAAGCATTAAATGCTACAAA GGCAAACCAAGAAGCTTATTTTCCTGATCCATATGCAGTCACCAGAAACCTCACTTCTAGTATTAGCCAGTGAGCCTCCT ATCAATCATTATCACTTTCATGCTATAAGCCTATAACATACCATAACATGTTCAATTCCATTAGAAGAATTCATCACATA TCATTAGAAATAAAATATTAAAATTATTCATTTATCATCATAATACAACTTTAAGCTTTTGGTACAGTTGATTCAAGACA TGGTATCAGAGTCTCTGTGACCAAATGGTGTAGAGCTCATTACCCCATTGTTGCAATAAAAAGTTGAATTTCAACACAAA AAATGAGTTTTCGCAAAAGATTTGTGCATTGTCCAAGCTTCAAGCTGCATCCTAAAGCTTTTAAATTGTATTCCTCTGCT TCATGCTTCATCTATCTATGTATATATTAAAAAAAATTATCTTTCCTCATAGTTCTTTTTCTTTTGGATAAACAGACTGA TAGTTGGTGGCAAGACAGGAAGAAGGCATTTAGGGGGACGTGGAGGTGGCCGATGCATGGCAACAAACCCCATTGATAGG TGTTGGAGGTGTGATCCCAATTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAGGGATTTGGAAGAAACACCAT TGGTGGAAAGAATGGTCCAATCTACGTGGTAACTGATTCCTCAGATAATGACATGATGAACCCAATTCCAGGTACCCTTC GGTATGCAGTTACAAGAAATGGACCCTTGTGGATCATCTTTGCTCGCAGCATGACCATCAGGCTCAACCAGGAGCTCATG ATTTCAAGTGACAAGACCATTGATGGCAGAGGAGCTGATATTGTCATTGCTAATGGTGCTGGTCTTACGATCCAGTATGT TAAGAATGTGATCGTCCATGGGATTAAGATTTTTGACAGTCAAGTGGGAAATGGTGGACTTATCAGAGATTCAGAGGACC ACTATGGTTTTAGGACACAGAGTGATGGTGATGGAATTTCCATTTTTGGCTCTAGCAATGTTTGGATTGACCATGTTTCC ATGAGAAACTGCAGAGATGGACTCATTGATGCCATCATGGGATCCACTGCTATTACCATCTCCAACGGCCATTTCACAGA CCACAATGAGGTAATTAATTGTTAATTTCTTTTCGAGTAATAATACTTAAACATACAAACAATCCAAACACTTGACTCGA CTCGATGACACATCAAAATTCTGACTTCGGATCCTCTATAGCCCTTGCAGCCTCTAGGGCACCAAAATCGCAAGTGTTTA AATACATTTGACCAATTCAACTTTTTACTAATCAATATGAATTATTTAATGTAAAATTTAAGGGTTAAGAATTTGCGGCG GATGTTGCCGCGATCCACGTTGCAATTTTATCTTTATATCACTCTTACATATATTACATCAATTATTTTTTTTTCCTTTC TCATTTTGAGTGTCTGTTAGATGTCTGCACTGTGCGGATATCTGTATTATACGAATTTTGTTCTTTGTTTAGATTTTTTA TTCACGAACAATTAATCCCTTGCTTGATTTTGGTGTTTTTATACATGTGATGCAGGTGATGCTTTTTGGTGCTAGTGACG CTTATGAGGGTGATAAGATAATGCAAATCACACTTGCATTCAACCATTTTGGTAAGAGATTAATCCAGAGGATGCCAAGG TGCAGATGGGGTTTCGTCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCATGCATCC TACCATTATTAGTGAAGGCAACCGATTCATAGCCCCCGACAACATTCATGCCAAAGAGGTAGATACCATTTATATATATA ATTTCTGAAGCGCGTATTTCGTCACTAATAATATCCTGCTAATAAACTGAATTTTTTGCATGATTAGTCTATTAGTTGCA TGTGGTCTTGAATCACATTAAAATGGCATGATTAATCAAAATTGAAGACTAATTTGGTGTGTTTTGGTGTTGGTGAAGAT AACAAAGAGGGAGTACACTCTGGAGGCAGAGTGGAGCAAGTGGCAATGGAGATCAATCAACGACGAGTACATGAACGGCG CATTTTTCAGACAAGCTGGACCAGAATTGACTAACAGGCCATTCACAAGGAGAGACATGATCAAAGCTAAGCCAGGAACA TATGTGGGAAGGCTCACTCGTTATGCTGGAAGCCTTCGATGCACTGTTGGAAAGCCTTGTTAGCCTTGTAAATTACTGCC TTTCCTGTAAAATTAATCCTCATTGATGCAGAAGTGCTTTTGGCAAAAGGGATAAAAAAGAGAGAGAGCAAACAAGATGG TGTCCTCAGAAAATATGTCATAGTTTTTCTTGTCTGTTTTCCCTTACTTTTACAGGAAAAGAAAGAAAAAAAATTGGTGA CCAGCTACACATGATCTCCTCTTCCTCCTAGTAAATGGAAATTATATGAAAAAAATCTGTTTTATAAATCTTACAAAGTT AACATTAGGAAATCTATGGTGTCCATGTGAGGATGTTTTTCCTAGCTGGTACCTAGTTTCAGTTGTTTGTGTGCCAGTCT TAGAAGATGTCATTGCAAGGAGTTTTCCATTTTCTTTTAGGACCCATTTAGTTTGATGTGTGCTGAAGCTTTTCCTGTTT ATTGGGTTCAAAATATATAACATTTTTGTTATTAATTGTCATTATCTTTCAACAACTCTAGTATCTTTGGCATTTTTAAT TTTGAGCTACGAAGGGGATTGATTGCTCTGTCAGTGGTATGAATGCTAGCTTTCTTGTTACCCCTCATAGGAATTACAGT TCTTGAAACGTGAGGAACAAAAATTCTTTGCTGCTATTCAATAATATTAGTGACGAAATTGAAAGTGGATACAAATTGAC AAGCAGGAAAATGATAAAAACTTGTTTTTGGAAGAAGACTACTAGGCAATCACTTGTTATGCACATTATAGCACAGACGA CAAATCACACAAACTTATTTATCCCACACGACAAAATAAACTGCTAATAGACATTGTTGACTCAAATTCAG
CDS sequence (LotjaGi2g1v0308100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATTTGTACACCTCCCTTCTTGTGATCTGTTTGGTAGTCATCATACCTACCTTGTATGCCAATGTCAAAGAGGA CCAGGTTTACTGGGATAGGCAGATGAAGGCGCTTGATACTACATATTGGAAGGACAAAGCATTAAATGCTACAAAGGCAA ACCAAGAAGCTTATTTTCCTGATCCATATGCAGTCACCAGAAACCTCACTTCTAGTATTAGCCAACTGATAGTTGGTGGC AAGACAGGAAGAAGGCATTTAGGGGGACGTGGAGGTGGCCGATGCATGGCAACAAACCCCATTGATAGGTGTTGGAGGTG TGATCCCAATTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAGGGATTTGGAAGAAACACCATTGGTGGAAAGA ATGGTCCAATCTACGTGGTAACTGATTCCTCAGATAATGACATGATGAACCCAATTCCAGGTACCCTTCGGTATGCAGTT ACAAGAAATGGACCCTTGTGGATCATCTTTGCTCGCAGCATGACCATCAGGCTCAACCAGGAGCTCATGATTTCAAGTGA CAAGACCATTGATGGCAGAGGAGCTGATATTGTCATTGCTAATGGTGCTGGTCTTACGATCCAGTATGTTAAGAATGTGA TCGTCCATGGGATTAAGATTTTTGACAGTCAAGTGGGAAATGGTGGACTTATCAGAGATTCAGAGGACCACTATGGTTTT AGGACACAGAGTGATGGTGATGGAATTTCCATTTTTGGCTCTAGCAATGTTTGGATTGACCATGTTTCCATGAGAAACTG CAGAGATGGACTCATTGATGCCATCATGGGATCCACTGCTATTACCATCTCCAACGGCCATTTCACAGACCACAATGAGG TGATGCTTTTTGGTGCTAGTGACGCTTATGAGGGTGATAAGATAATGCAAATCACACTTGCATTCAACCATTTTGGTAAG AGATTAATCCAGAGGATGCCAAGGTGCAGATGGGGTTTCGTCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTA TGCCATTGGTGGTAGCATGCATCCTACCATTATTAGTGAAGGCAACCGATTCATAGCCCCCGACAACATTCATGCCAAAG AGATAACAAAGAGGGAGTACACTCTGGAGGCAGAGTGGAGCAAGTGGCAATGGAGATCAATCAACGACGAGTACATGAAC GGCGCATTTTTCAGACAAGCTGGACCAGAATTGACTAACAGGCCATTCACAAGGAGAGACATGATCAAAGCTAAGCCAGG AACATATGTGGGAAGGCTCACTCGTTATGCTGGAAGCCTTCGATGCACTGTTGGAAAGCCTTGTTAG
Protein sequence (LotjaGi2g1v0308100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADLYTSLLVICLVVIIPTLYANVKEDQVYWDRQMKALDTTYWKDKALNATKANQEAYFPDPYAVTRNLTSSISQLIVGG KTGRRHLGGRGGGRCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRNTIGGKNGPIYVVTDSSDNDMMNPIPGTLRYAV TRNGPLWIIFARSMTIRLNQELMISSDKTIDGRGADIVIANGAGLTIQYVKNVIVHGIKIFDSQVGNGGLIRDSEDHYGF RTQSDGDGISIFGSSNVWIDHVSMRNCRDGLIDAIMGSTAITISNGHFTDHNEVMLFGASDAYEGDKIMQITLAFNHFGK RLIQRMPRCRWGFVHVVNNDYTHWEMYAIGGSMHPTIISEGNRFIAPDNIHAKEITKREYTLEAEWSKWQWRSINDEYMN GAFFRQAGPELTNRPFTRRDMIKAKPGTYVGRLTRYAGSLRCTVGKPC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| PANTHER | 3 | 448 | 446 | 1.7E-269 | – | |
| PANTHER | 3 | 448 | 446 | 1.7E-269 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 448 | 426 | - | – | |
| Pfam | 42 | 87 | 46 | 1.9E-7 | ||
| Gene3D | 98 | 441 | 344 | 3.0E-117 | ||
| SUPERFAMILY | 99 | 439 | 341 | 2.15E-99 | ||
| PRINTS | 121 | 138 | 18 | 1.7E-80 | ||
| PRINTS | 145 | 170 | 26 | 1.7E-80 | ||
| SMART | 173 | 370 | 198 | 1.0E-96 | ||
| Pfam | 181 | 364 | 184 | 2.5E-20 | ||
| PRINTS | 181 | 197 | 17 | 1.7E-80 | ||
| PRINTS | 245 | 266 | 22 | 1.7E-80 | ||
| PRINTS | 325 | 344 | 20 | 1.7E-80 | ||
| PRINTS | 347 | 366 | 20 | 1.7E-80 | ||
| PRINTS | 389 | 413 | 25 | 1.7E-80 | ||
| PRINTS | 419 | 442 | 24 | 1.7E-80 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectate lyase activity | Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. |
Expression pattern of LotjaGi2g1v0308100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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